Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069191 ID=TCONS_00069191|Name=TCONS_00069191|organism=Clytia hemisphaerica|type=transcript|length=2203bpRun BLAST on NCBI protein sequence of TCONS_00069191-protein >TCONS_00069191-protein ID=TCONS_00069191-protein|Name=TCONS_00069191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp MPGNKLDDYDVVCTIGSGSYGTCKKIKRKTDGKIRVWKELEYGSMTDEEKRun BLAST on NCBI transcript from alignment at scaffold_496:571096..580453+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069191 ID=TCONS_00069191|Name=TCONS_00069191|organism=Clytia hemisphaerica|type=transcript|length=9358bp|location=Sequence derived from alignment at scaffold_496:571096..580453+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_496:571096..580453+ >TCONS_00069191 ID=TCONS_00069191|Name=TCONS_00069191|organism=Clytia hemisphaerica|type=CDS|length=11853bp|location=Sequence derived from alignment at scaffold_496:571096..580453+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069191 vs. Swiss-Prot (Human)
Match: NEK2 (Serine/threonine-protein kinase Nek2 OS=Homo sapiens GN=NEK2 PE=1 SV=1) HSP 1 Score: 391.349 bits (1004), Expect = 1.030e-127 Identity = 180/267 (67.42%), Postives = 224/267 (83.90%), Query Frame = 3 Query: 144 MPGNKLDDYDVVCTIGSGSYGTCKKIKRKTDGKIRVWKELEYGSMTDEEKKLLVSEVNLLRELKHPNIVRYHDRIIDRGSTKIYIVMEFCEGGDLAAYILKYRKQRKFVDEAFIWKALYQLSLALSECHLQSRGGSSVLHRDLKPANVFLDSNNNCKLGDFGLARVLNHDTSFAKTFVGTPYYMSPELVNRTNYNQKSDIWSLGCLIYELTALMPPFLAANQKLLAMKIKDGHYRPIPTHYSKDLETIIKKMLTVVESKRPTIEDIL 944 MP ++ +DY+V+ TIG+GSYG C+KI+RK+DGKI VWKEL+YGSMT+ EK++LVSEVNLLRELKHPNIVRY+DRIIDR +T +YIVME+CEGGDLA+ I K K+R+++DE F+ + + QL+LAL ECH +S GG +VLHRDLKPANVFLD N KLGDFGLAR+LNHDTSFAKTFVGTPYYMSPE +NR +YN+KSDIWSLGCL+YEL ALMPPF A +QK LA KI++G +R IP YS +L II +ML + + RP++E+IL Sbjct: 1 MP-SRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEIL 266 The following BLAST results are available for this feature:
BLAST of TCONS_00069191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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