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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069188 ID=TCONS_00069188|Name=TCONS_00069188|organism=Clytia hemisphaerica|type=transcript|length=1406bp
TATTATGCCCTTCTTCGATCGGAAGAATTTACAAGAGGAAGGACACTGGC
CCGAACGTTAGGCCATTTTTCGGGGCCATGGTTGTACCATAAAAtcttga
aagattttttgatgtaaaattttggaattttaaattAACTAGATTTAAGA
ACCCCATTTTCCAATCTTAATGTATAAGTAAATTTGTTGATATTCATAGT
AACATACGTTCTCCGTACAACGTCGACTATTCGAGGTTCGTAATTTGTAA
GTTCCAACCCCTCTTTTGATTTGATAACGTCATCTTCTAGTTTTAAAGGA
TAAGTAATTTTGTTGAAGTTCATGACAGTATTGGAATGAGCAGCAGTGCA
AGAAATTTATGAAACATGTACGACAAGGAACGCAACAAGTGTAAAGGGAA
AAAAGGGCCCAATCTCTTTTCTGTCAATCTTCTTTTCTGTCAATCTTCTT
TTTATCTGACCTTTGCTTTCGAACCTTTTTGGTTTCTGCAACCTTTCTTG
CGTCTCTGACATAGATTCCAAAGATCTCTTTCTTATTTCCAAGCCTTGTT
GTTGcgattctttcttcttttttgtctCTTCGTCTCTTTGTTCTTTAATG
TCCAAGGATGTCTTTTCAACGTCAAGGAGATCTTAGGTTTGGTGGTAGCA
GTTGTGCACGTGGCAGCAGGTTTATTTGTGATAGTGGCGATGGAGAAAGC
ATACATTTCTTTTAGTACAATTTTTCTTTCTGGGAGGAAATTGAGTGGCT
TAGTGGCaatggttgaaaaaaaaacggtttgGCGGCAGCAGAAGAAGTAG
AAGAGATGGATGAGAAAGGCGGAAAGATGTAAATAGCCTTTTTCATAGGT
TGTGCCAGTGGTGGTGATGGTAAAGTGGTAATCTTGGTGGCAGGTCTTTT
TGGCATGTAACGAAGACAGGGTGTAGTTTTTTGGCTTGGGTGACATTTTG
GTTATTGGATGTAGACATATTTTTAAcactaaaaaggaaaaataaaagtt
ttgacatCAAAACCATCAGTCagctagactggagtcgtttataatgcatg
taatactaataataaacacaaataatgatacgggatttagtttgtataaa
cgactggaagaatccggtgtcccagccttatagataccggggctagctac
gcagaaacttgcgtagcgagaaaacaatttatcaagcaacaacaaactct
caaaataaaatcaactcaaaggaaaaacttttaacacgcaaatccacaca
cattttattttcaagaatttgttttgagcgggaaaaaattttaattatgc
gatattgacacttttcttttgtttggagttagtgcacaaaggtttagacg
actaaaatttacttttttgctttatttctaatatgtctgaattagtcgtc
tagctt Run BLAST on NCBI transcript from alignment at scaffold_496:280143..281674+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069188 ID=TCONS_00069188|Name=TCONS_00069188|organism=Clytia hemisphaerica|type=transcript|length=1532bp|location=Sequence derived from alignment at scaffold_496:280143..281674+ (Clytia hemisphaerica)
TATTATGCCCTTCTTCGATCGGAAGAATTTACAAGAGGAAGGACACTGGC
CCGAACGTTAGGCCATTTTTCGGGGCCATGGTTGTACCATAAAAtcttga
aagattttttgatgtaaaattttggaattttaaattAACTAGATTTAAGA
ACCCCATTTTCCAATCTTAATGTATAAGTAAATTTGTTGATATTCATAGT
AACATACGTTCTCCGTACAACGTCGACTATTCGAGGTTCGTAATTGGTTA
GTTCCAACCCCTCTTTTGATTTGATAACCCCATCTTCTAGTTTTAAAGGA
TAAGTAAATTTGTTGATATTCATAGTAACATACGTTCTCCATACAACGTC
GACTATTCGAGGTTCGTAATTTGTAAGTTCCAACCCCTCTTTTGATTTGA
TAACGTCATCTTCTAGTTTTAAAGGATAAGTAATTTTGTTGAAGTTCATG
ACAGTATTGGAATGAGCAGCAGTGCAAGAAATTTATGAAACATGTACGAC
AAGGAACGCAACAAGTGTAAAGGGAAAAAAGGGCCCAATCTCTTTTCTGT
CAATCTTCTTTTCTGTCAATCTTCTTTTTATCTGACCTTTGCTTTCGAAC
CTTTTTGGTTTCTGCAACCTTTCTTGCGTCTCTGACATAGATTCCAAAGA
TCTCTTTCTTATTTCCAAGCCTTGTTGTTGcgattctttcttcttttttg
tctCTTCGTCTCTTTGTTCTTTAATGTCCAAGGATGTCTTTTCAACGTCA
AGGAGATCTTAGGTTTGGTGGTAGCAGTTGTGCACGTGGCAGCAGGTTTA
TTTGTGATAGTGGCGATGGAGAAAGCATACATTTCTTTTAGTACAATTTT
TCTTTCTGGGAGGAAATTGAGTGGCTTAGTGGCaatggttgaaaaaaaaa
cggtttgGCGGCAGCAGAAGAAGTAGAAGAGATGGATGAGAAAGGCGGAA
AGATGTAAATAGCCTTTTTCATAGGTTGTGCCAGTGGTGGTGATGGTAAA
GTGGTAATCTTGGTGGCAGGTCTTTTTGGCATGTAACGAAGACAGGGTGT
AGTTTTTTGGCTTGGGTGACATTTTGGTTATTGGATGTAGACATATTTTT
AAcactaaaaaggaaaaataaaagttttgacatCAAAACCATCAGTCagc
tagactggagtcgtttataatgcatgtaatactaataataaacacaaata
atgatacgggatttagtttgtataaacgactggaagaatccggtgtccca
gccttatagataccggggctagctacgcagaaacttgcgtagcgagaaaa
caatttatcaagcaacaacaaactctcaaaataaaatcaactcaaaggaa
aaacttttaacacgcaaatccacacacattttattttcaagaatttgttt
tgagcgggaaaaaattttaattatgcgatattgacacttttcttttgttt
ggagttagtgcacaaaggtttagacgactaaaatttacttttttgcttta
tttctaatatgtctgaattagtcgtctagctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069188-exon-scaffold_496-1491911889:280143..280377 | TCONS_00069188-exon-scaffold_496-1491911889:280143..280377 | Clytia hemisphaerica | exon |
| TCONS_00069188-exon-scaffold_496-1510915933:280143..280377 | TCONS_00069188-exon-scaffold_496-1510915933:280143..280377 | Clytia hemisphaerica | exon |
| TCONS_00069188-exon-scaffold_496-1575043694:280143..280377 | TCONS_00069188-exon-scaffold_496-1575043694:280143..280377 | Clytia hemisphaerica | exon |
| TCONS_00069188-exon-scaffold_496-1491911889:280504..281674 | TCONS_00069188-exon-scaffold_496-1491911889:280504..281674 | Clytia hemisphaerica | exon |
| TCONS_00069188-exon-scaffold_496-1510915933:280504..281674 | TCONS_00069188-exon-scaffold_496-1510915933:280504..281674 | Clytia hemisphaerica | exon |
| TCONS_00069188-exon-scaffold_496-1575043694:280504..281674 | TCONS_00069188-exon-scaffold_496-1575043694:280504..281674 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:280143..281674 + |
Blast
The following BLAST results are available for this feature:
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