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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069186 ID=TCONS_00069186|Name=TCONS_00069186|organism=Clytia hemisphaerica|type=transcript|length=1870bpRun BLAST on NCBI protein sequence of TCONS_00069186-protein >TCONS_00069186-protein ID=TCONS_00069186-protein|Name=TCONS_00069186-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp MMEVESDDDIPLSLVARKNSIDDDGSSDSSSDSINEAPTPVKSKPVPLTTRun BLAST on NCBI transcript from alignment at scaffold_496:222123..246262+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069186 ID=TCONS_00069186|Name=TCONS_00069186|organism=Clytia hemisphaerica|type=transcript|length=24140bp|location=Sequence derived from alignment at scaffold_496:222123..246262+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_496:222123..246262+ >TCONS_00069186 ID=TCONS_00069186|Name=TCONS_00069186|organism=Clytia hemisphaerica|type=CDS|length=20538bp|location=Sequence derived from alignment at scaffold_496:222123..246262+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00069186 vs. Swiss-Prot (Human)
Match: PHF10 (PHD finger protein 10 OS=Homo sapiens GN=PHF10 PE=1 SV=3) HSP 1 Score: 163.31 bits (412), Expect = 2.706e-43 Identity = 70/102 (68.63%), Postives = 77/102 (75.49%), Query Frame = 2
Query: 1217 DPFCGICKKGPEMNKRGLPEKLIHCSQCENSGHPSCLDMNRHLVKVIQGYDWQCMECKTCTQCSAPHDEEAMMFCDNCDRGYHSYCVGLKEIPKGRWICEKC 1522
+ CGIC KG E NK+G E LIHCSQCENSGHPSCLDM LV +I+ Y WQCMECKTC C PH EE MMFCD CDRGYH++CVGL IP GRWIC+ C
Sbjct: 377 NAICGICLKGKESNKKGKAESLIHCSQCENSGHPSCLDMTMELVSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCDRGYHTFCVGLGAIPSGRWICDCC 478 HSP 2 Score: 138.658 bits (348), Expect = 4.379e-35 Identity = 76/215 (35.35%), Postives = 137/215 (63.72%), Query Frame = 2
Query: 467 PAQPTIFEYEWPKNRSGFFFVIECELAKFLEVSVL----PEVKKRSISEDEWRHITE-QLGHQFESFKPLKAIQVEDAYQLMAEEYPEKFLLYNKFVHHQEIQKL---------VRKQESQRIDVIKGRIPNIMKRSLRETVRYNSQLNRERIEERRAYFDLQTQIIHLPQKKRKYDPDFKPEKSLYPLALIPGQYQDYFKRYTPSELRKLPLNS 1069
PA+ + EY+WP + +G +++++ +++++L V+ P++++R +S E ++ E + + + L A++ ++ LM +EYP K Y+ + +E Q++ +++Q +Q+++ K +P +K++ ++ +NS LNRER+EERRAYFDLQT +I +PQ K K P + + S YP+ALIPGQ+Q+Y+KRY+P ELR LPLN+
Sbjct: 70 PAE-NLIEYKWPPDETGEYYMLQEQVSEYLGVTSFKRKYPDLERRDLSHKEKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPAKHAEYSVILQEKERQRITDHYKEYSQMQQQNTQKVEASK--VPEYIKKAAKKAAEFNSNLNRERMEERRAYFDLQTHVIQVPQGKYKVLPTERTKVSSYPVALIPGQFQEYYKRYSPDELRYLPLNT 281 The following BLAST results are available for this feature:
BLAST of TCONS_00069186 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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