TCONS_00069178 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069178
Unique NameTCONS_00069178
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069178 ID=TCONS_00069178|Name=TCONS_00069178|organism=Clytia hemisphaerica|type=transcript|length=505bp
tccagggttatataaaggtcagtgctctAGACCCATCCCTCGTGAATTTA
CTAAAATTCATTtaaagacaatttaaaaatgGAGCTGGATTAAAGATAAA
GTTACGTACCCATCTCTCATCTTGATGTGTCGCCTTGCATAAATGATTGC
CACAACAACCAGAGCTAATACTACCACCACACCAAACACTATCAATGCTG
AGTTCTAAAAACAAGACAAAAATCAAGTCAGATAGAATGAGAAAATCTCG
CGCGTCGTACAACATGAAAAACGTGCTAAAAAATCTTACAATAGGACATC
TGAGGATTCGCAGCATAGGGGTTCCGTGATATAGTACAGAGTAGTTTAGc
cagctagacgactaattcagacatagtagaaataaagcaaaaagtaatgg
aggtaACAAATTTTAGTTTAGACAAACTagatcccgtaacaataatcgta
ttatcatataactcctatactactgtattacacgcattatgaaCGACCTA
GTGAC
Run BLAST on NCBI

transcript from alignment at scaffold_495:112584..113088

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069178 ID=TCONS_00069178|Name=TCONS_00069178|organism=Clytia hemisphaerica|type=transcript|length=505bp|location=Sequence derived from alignment at scaffold_495:112584..113088 (Clytia hemisphaerica)
GTCACTAGGTCGttcataatgcgtgtaatacagtagtataggagttatat
gataatacgattattgttacgggatctAGTTTGTCTAAACTAAAATTTGT
tacctccattactttttgctttatttctactatgtctgaattagtcgtct
agctggCTAAACTACTCTGTACTATATCACGGAACCCCTATGCTGCGAAT
CCTCAGATGTCCTATTGTAAGATTTTTTAGCACGTTTTTCATGTTGTACG
ACGCGCGAGATTTTCTCATTCTATCTGACTTGATTTTTGTCTTGTTTTTA
GAACTCAGCATTGATAGTGTTTGGTGTGGTGGTAGTATTAGCTCTGGTTG
TTGTGGCAATCATTTATGCAAGGCGACACATCAAGATGAGAGATGGGTAC
GTAACTTTATCTTTAATCCAGCTCcatttttaaattgtctttaAATGAAT
TTTAGTAAATTCACGAGGGATGGGTCTagagcactgacctttatataacc
ctgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043119XLOC_043119Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069178-exon-scaffold_495-1491911889:112584..113088TCONS_00069178-exon-scaffold_495-1491911889:112584..113088Clytia hemisphaericaexon
TCONS_00069178-exon-scaffold_495-1510915933:112584..113088TCONS_00069178-exon-scaffold_495-1510915933:112584..113088Clytia hemisphaericaexon
TCONS_00069178-exon-scaffold_495-1575043694:112584..113088TCONS_00069178-exon-scaffold_495-1575043694:112584..113088Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_495supercontigscaffold_495:112584..113088 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.4073	15.6873	7.31404	6.78621	34.8144	25.3258	36.5987	43.8392	23.0718	24.5477	30.1214	26.5059	23.2763	21.8741	10.0781	11.0528	8.10223	15.3194	13.7395	24.2314	4.52873	5.62539	4.67368	7.45776	38.5903	36.64	7.86906	8.42364	2.66064	1.76657
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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