TCONS_00069161 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069161
Unique NameTCONS_00069161
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069161 ID=TCONS_00069161|Name=TCONS_00069161|organism=Clytia hemisphaerica|type=transcript|length=243bp
TCATCAATGTCAAGTGTAACACTGCACGAAAGCCACCTGCAAGCAAAAAG
TCGAACGCGGATGACGAAGCGGAAGAATAACACCGCCCGCCTCAGAAACC
ACCCGTCCGCCCGTGAGATCGCGGTTCACCGTTCGCCTTTACCGTTGGCC
TTTTATCTTTTAGCGCTGGATCATTTGGtctgtaattattttttttaagg
aGATTTCATTCTCTTTTTATTAATTTGTGAATCTCAAGAAACT
Run BLAST on NCBI

transcript from alignment at scaffold_495:243610..244132+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069161 ID=TCONS_00069161|Name=TCONS_00069161|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at scaffold_495:243610..244132+ (Clytia hemisphaerica)
TCATCAATGTCAAGTGTAACACTGCACGAAAGCCACGTAAGTAGTTCATT
GTAGATGATAAAAGAGATATTTGTAGATTGCTGCAGTTTCATTAAAACTT
GGAAATTTCTGACTTCGATTCACGGCTTCGCTTCTTGGGGAAAGAAGTAG
TTcacgtttgtttgttttgatcaatCGTTCCATTTTGTGTACTTTACAGA
ATGTTTTAGAAAGGGTCTTCTACAGAACGCAATAAAAGGTCTAATGCACA
ATGTTTATTTTGCCGAACAGTAGCGCATTTTCATTGGCAGTATACGCGGG
ATTTTTTCTCTTTCAGCTGCAAGCAAAAAGTCGAACGCGGATGACGAAGC
GGAAGAATAACACCGCCCGCCTCAGAAACCACCCGTCCGCCCGTGAGATC
GCGGTTCACCGTTCGCCTTTACCGTTGGCCTTTTATCTTTTAGCGCTGGA
TCATTTGGtctgtaattattttttttaaggaGATTTCATTCTCTTTTTAT
TAATTTGTGAATCTCAAGAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043110XLOC_043110Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069161-exon-scaffold_495-1491911889:243610..243645TCONS_00069161-exon-scaffold_495-1491911889:243610..243645Clytia hemisphaericaexon
TCONS_00069161-exon-scaffold_495-1510915933:243610..243645TCONS_00069161-exon-scaffold_495-1510915933:243610..243645Clytia hemisphaericaexon
TCONS_00069161-exon-scaffold_495-1575043694:243610..243645TCONS_00069161-exon-scaffold_495-1575043694:243610..243645Clytia hemisphaericaexon
TCONS_00069161-exon-scaffold_495-1491911889:243926..244132TCONS_00069161-exon-scaffold_495-1491911889:243926..244132Clytia hemisphaericaexon
TCONS_00069161-exon-scaffold_495-1510915933:243926..244132TCONS_00069161-exon-scaffold_495-1510915933:243926..244132Clytia hemisphaericaexon
TCONS_00069161-exon-scaffold_495-1575043694:243926..244132TCONS_00069161-exon-scaffold_495-1575043694:243926..244132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_495supercontigscaffold_495:243610..244132 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.10196	0	0	2.01858	0.868372	0.570834	0.57004	0	0.486698	0.567435	0	0.659498	0	0.953434	0.828707	0	0	0.893463	0	4.10649	0	2.50857	2.85399	1.93851
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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