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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069153 ID=TCONS_00069153|Name=TCONS_00069153|organism=Clytia hemisphaerica|type=transcript|length=2226bpRun BLAST on NCBI protein sequence of TCONS_00069153-protein >TCONS_00069153-protein ID=TCONS_00069153-protein|Name=TCONS_00069153-protein|organism=Clytia hemisphaerica|type=polypeptide|length=727bp MLTITIFLFFAVVGQLSTFDINLPEASHRYRREISDSKTIPPICKSHLNERun BLAST on NCBI transcript from alignment at scaffold_495:90153..111928+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069153 ID=TCONS_00069153|Name=TCONS_00069153|organism=Clytia hemisphaerica|type=transcript|length=21776bp|location=Sequence derived from alignment at scaffold_495:90153..111928+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_495:90153..111928+ >TCONS_00069153 ID=TCONS_00069153|Name=TCONS_00069153|organism=Clytia hemisphaerica|type=CDS|length=45864bp|location=Sequence derived from alignment at scaffold_495:90153..111928+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069153 vs. Swiss-Prot (Human)
Match: SORT (Sortilin OS=Homo sapiens GN=SORT1 PE=1 SV=3) HSP 1 Score: 319.316 bits (817), Expect = 6.565e-96 Identity = 212/664 (31.93%), Postives = 341/664 (51.36%), Query Frame = 1
Query: 238 DKNNDVALVWLGDNLETQILLTTVNTLSSHFLSIFNIFGKHESPSNIYRSTDGGKSFQNIEINIGKEAIRSEAGIFKSPVDPKMMILXXXXXXXXXXXXXXDENKDHGALIVTKDSAATFEINKLPFDLREGDSIRFHPKRKDWIIALEKPTVLIAFGKSKKTGTAHLSTDFGKTWTPIMKDEILEEIKWGTMKGHEDEIFAMTKVVGGFSFVMHGFGTAGKNALYKTKINPSDPKKFAFKKVVESVESFGIQDEFVFATVVIEKDDGDDERIIHVSKDSGETFNVIHFPRITTDKFFAVMEMYKGLIFLHEDGDGDTGKGTLYISGPEGRVYEKSLKDHFYTNQ-RLTDFYKVQSMPGVYITQRLIADNTLKSVITFDRGVKWRPLYVERSVYCTDKKYKDTKVDCSLHFHHIYSRRQSHSVAQYVQSPISSPSAPGLILVHGVAGDGLTGKM-NVWMSKNGGYNWIEVAKGPHHYAIGDNGNLIILVPKLNATGTTLKYSIDQGRCWHEFEFTSKNQPLQIQGLVTEPHSQERSFSLWGLRKDAKYEDKEWIIVTVDFGKMLDKTCALSDFENWSPHKLNG---KDGCFLGEKITYKRPKEDSICHVGRKFNPVVATTKCPCTVADFVCDYGYKR-DSSNKCIRD---KTKSLMFCVNGEEE 2202
D V+L W+GD+ ++LTT H + FG+ S +YRS D GK+F++I I IR+E G+ P + ++L ++VS G + + D A F LPF + + P+ D+++AL L +S +FG W I K L KWG+ ++ IF T G G L++T SD K +FK + + SFG+ F+FA+V+ +KD R IHVS D G+T+++ P + ++F++++ ++F+H D GDTG GT++ S G VY KSL H YT TDF V S+ GVYIT L DN+++++ITFD+G +W L + C D K+ K +CSLH H YS Q +V +P+S P+A G+++ HG GD ++ + +V++S +GGY+W ++ +GPH+Y I D+G +I+ + + +K+S D+G+CW + FT P+ GL +EP ++ + S+WG + + +W+ T+DF +L++ C D+ W H + +DGC LG K + R ++ S+C GR + + C C++ DF+CD+GY R ++ +KC+ K L FC+ G EE
Sbjct: 107 DLRGSVSLSWVGDSTGVILVLTTF-----HVPLVIMTFGQ----SKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVSG----------GSRGGRIFRSSDFAKNFVQTDLPF--HPLTQMMYSPQNSDYLLALSTENGL------------WVSKNFGGKWEEIHKAVCLA--KWGS----DNTIFFTTYANGSCK------ADLGALELWRT----SDLGK-SFKTIGVKIYSFGLGGRFLFASVMADKDT---TRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYITSVLSEDNSIQTMITFDQGGRWTHLRKPENSEC-DATAKN-KNECSLHIHASYSISQKLNVP---MAPLSEPNAVGIVIAHGSVGDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHSSRPINVIKFSTDEGQCWQTYTFT--RDPIYFTGLASEPGARSMNISIWGFTE--SFLTSQWVSYTIDFKDILERNCEEKDYTIWLAHSTDPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVTKQPSICLCSLEDFLCDFGYYRPENDSKCVEQPELKGHDLEFCLYGREE 708 The following BLAST results are available for this feature:
BLAST of TCONS_00069153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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