TCONS_00069152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069152
Unique NameTCONS_00069152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069152 ID=TCONS_00069152|Name=TCONS_00069152|organism=Clytia hemisphaerica|type=transcript|length=259bp
GGGGAGACTGGGTGCGAGGATTTGGAAGGTGGTGATGACATTCCTTTCCC
ATTCTCATTTCTAGTCACGTGGATAGAAGGAATGATTGGTGTAAATGGGA
CACCAAACATATCGGGTTTAGAGCTTCGTTGATGATTGATGCTTTTTCGT
GGTGTACGCAAAAGATTTGATTCGTAGTCCTTATGTTGAGTTGTGTGCGG
AATCCATGTGGCAGGGAAATCGTTGTCTGCTGCATATTTCCTCCAAAAAC
Tctgttaaa
Run BLAST on NCBI

transcript from alignment at scaffold_495:40058..40419+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069152 ID=TCONS_00069152|Name=TCONS_00069152|organism=Clytia hemisphaerica|type=transcript|length=362bp|location=Sequence derived from alignment at scaffold_495:40058..40419+ (Clytia hemisphaerica)
GGGGAGACTGGGTGCGAGGATTTGGAAGGTGGTGATGACATTCCTTTCCC
ATTGNtcattttcaaccaatcaactgTTGGTTATATAACAACAATACAAA
CCTGGGGAGACTGGGTGCGAGGATTTGGAAGGTGGTGACGACATTCCTTT
CCCATTCTCATTTCTAGTCACGTGGATAGAAGGAATGATTGGTGTAAATG
GGACACCAAACATATCGGGTTTAGAGCTTCGTTGATGATTGATGCTTTTT
CGTGGTGTACGCAAAAGATTTGATTCGTAGTCCTTATGTTGAGTTGTGTG
CGGAATCCATGTGGCAGGGAAATCGTTGTCTGCTGCATATTTCCTCCAAA
AACTctgttaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043104XLOC_043104Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069152-exon-scaffold_495-1491911889:40058..40096TCONS_00069152-exon-scaffold_495-1491911889:40058..40096Clytia hemisphaericaexon
TCONS_00069152-exon-scaffold_495-1510915933:40058..40096TCONS_00069152-exon-scaffold_495-1510915933:40058..40096Clytia hemisphaericaexon
TCONS_00069152-exon-scaffold_495-1575043694:40058..40096TCONS_00069152-exon-scaffold_495-1575043694:40058..40096Clytia hemisphaericaexon
TCONS_00069152-exon-scaffold_495-1491911889:40200..40419TCONS_00069152-exon-scaffold_495-1491911889:40200..40419Clytia hemisphaericaexon
TCONS_00069152-exon-scaffold_495-1510915933:40200..40419TCONS_00069152-exon-scaffold_495-1510915933:40200..40419Clytia hemisphaericaexon
TCONS_00069152-exon-scaffold_495-1575043694:40200..40419TCONS_00069152-exon-scaffold_495-1575043694:40200..40419Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_495supercontigscaffold_495:40058..40419 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.90404	2.15143	1.17484	1.35912	0.472639	2.48411	0	5.15765	13.1267	27.15	3.67517	12.17	2.00548	3.34262	0.824117	0.406166	2.08162	0.755573	4.09202	2.14123	3.89269	0	5.02813	10.0581	0	4.85477	0	1.39246	2.84211	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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