TCONS_00069108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069108
Unique NameTCONS_00069108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069108 ID=TCONS_00069108|Name=TCONS_00069108|organism=Clytia hemisphaerica|type=transcript|length=479bp
AATTCTAAGAAGCCGCATATCATCACTTCTTGTATCGAACACGATTCCAT
TCTAAACCCATTAAAAGAGTTGGAAAGAGAAGGTCGAGTGGATGTTACTT
ACGTCAATGTTTCAAAAGAGCATGGATTTGTTGACCCAGATAACGTGTTG
CAGGAGATTAGAGATGAAACAGTCTTGGTGACTTTAATGATGGCTAATAA
TGAGACTGGTGTTATTCAGGTTtccttttatttcatattaGCCAGGGAAC
ACGGTAAattattggaaaaaaaaaagatatcacATAACAGAGCATTAGGT
TCGCAATCTTTAGAATTTTAAGGTTTTCAAGTCGAGCCTTCAGACTAACA
AAAAAACCATATCAGCATCATctattattaaatattttgaaaattttccc
ttttATGACTTGACTCGTTTTAGGTATTCAAAGTTTCTTACTTATCTTGT
AATATAAAAGTTTTTATTGGTGTTTTCAA
Run BLAST on NCBI

protein sequence of TCONS_00069108-protein

>TCONS_00069108-protein ID=TCONS_00069108-protein|Name=TCONS_00069108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
NSKKPHIITSCIEHDSILNPLKELEREGRVDVTYVNVSKEHGFVDPDNVL
QEIRDETVLVTLMMANNETGVIQVSFYFILAREHGKLLEKKKISHNRALG
SQSLEF
Run BLAST on NCBI

transcript from alignment at scaffold_493:19654..20132

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069108 ID=TCONS_00069108|Name=TCONS_00069108|organism=Clytia hemisphaerica|type=transcript|length=479bp|location=Sequence derived from alignment at scaffold_493:19654..20132 (Clytia hemisphaerica)
TTGAAAACACCAATAAAAACTTTTATATTACAAGATAAGTAAGAAACTTT
GAATACCTAAAACGAGTCAAGTCATaaaagggaaaattttcaaaatattt
aataatagATGATGCTGATATGGTTTTTTTGTTAGTCTGAAGGCTCGACT
TGAAAACCTTAAAATTCTAAAGATTGCGAACCTAATGCTCTGTTATgtga
tatcttttttttttccaataatTTACCGTGTTCCCTGGCtaatatgaaat
aaaaggaAACCTGAATAACACCAGTCTCATTATTAGCCATCATTAAAGTC
ACCAAGACTGTTTCATCTCTAATCTCCTGCAACACGTTATCTGGGTCAAC
AAATCCATGCTCTTTTGAAACATTGACGTAAGTAACATCCACTCGACCTT
CTCTTTCCAACTCTTTTAATGGGTTTAGAATGGAATCGTGTTCGATACAA
GAAGTGATGATATGCGGCTTCTTAGAATT

Coding sequence (CDS) from alignment at scaffold_493:19654..20132

>TCONS_00069108 ID=TCONS_00069108|Name=TCONS_00069108|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_493:19654..20132 (Clytia hemisphaerica)
TTAAAATTCTAAAGATTGCGAACCTAATGCTCTGTTATgtgatatctttt
ttttttccaataatTTACCGTGTTCCCTGGCtaatatgaaataaaaggaA
ACCTGAATAACACCAGTCTCATTATTAGCCATCATTAAAGTCACCAAGAC
TGTTTCATCTCTAATCTCCTGCAACACGTTATCTGGGTCAACAAATCCAT
GCTCTTTTGAAACATTGACGTAAGTAACATCCACTCGACCTTCTCTTTCC
AACTCTTTTAATGGGTTTAGAATGGAATCGTGTTCGATACAAGAAGTGAT
GATATGCGGCTTCTTAGAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043067XLOC_043067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069108-exon-scaffold_493-1491911889:19654..20132TCONS_00069108-exon-scaffold_493-1491911889:19654..20132Clytia hemisphaericaexon
TCONS_00069108-exon-scaffold_493-1510915933:19654..20132TCONS_00069108-exon-scaffold_493-1510915933:19654..20132Clytia hemisphaericaexon
TCONS_00069108-exon-scaffold_493-1575043694:19654..20132TCONS_00069108-exon-scaffold_493-1575043694:19654..20132Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069108-proteinTCONS_00069108-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_493supercontigscaffold_493:19654..20132 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02928	1.3875	0.297553	0.145555	1.06319	0.355199	1.82634	2.16226	2.8909	3.36919	4.16345	1.42588	1.70202	2.08736	2.71561	2.99802	3.76046	3.22186	1.61522	1.49426	1.24947	2.45934	6.0049	5.21243	0.705387	0.251816	3.28347	1.57401	7.23283	4.57206
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015421PyrdxlP-dep_Trfase_major_sub1
IPR000192Aminotrans_V_dom
IPR015424PyrdxlP-dep_Trfase
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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