TCONS_00069107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069107
Unique NameTCONS_00069107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1670

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069107 ID=TCONS_00069107|Name=TCONS_00069107|organism=Clytia hemisphaerica|type=transcript|length=1670bp
CTCCTCTTGTATCTTCACTAAGATCTGTTCAAGTACCAAGTGATTCTCTT
TAACTTGTTGATATCGGGTAAAAGCTTCTGAGTTTGGCTTCTATTCAACA
CGACTGTATCTCCGTTTAAATCATTCATTCATTCATTTTATAATTCATAA
TTTATTAGTCATGTCGTTTTCCTTATAAGGAAATTTAATCGAACATTCTT
TTGCTTTTGATGCTCGTTTGATTATTCAAAGGATTTCATTTTCTTGCCTT
GCTTCGCCAATATTCCTCTATTATTTCCTTAGGAATATTTTCCGTTGGCT
CCCAAGTGTTTTGATTCTCATCATAGTTCAACCATTTGACCAGGAACCTG
ATTCCATTTCTGGTTTTCTTGTGTTTAATCAATTTTTCCACTAGATAGAA
ATCTTCGGGTAGATAGCCATTTTTCGCCTTGCCATCCTTCTCTTGCGACA
AAGTGGCTTCTTTTGCTTGGGGATTCGGTTTTCTGGCAGCTTCATTTCTA
GGAACTTCTTGAGTGGCTGCACCATCCAATTCTTCTATAGTTTTCCATGG
CTTCATTCTGTCGAAATGAACTCGCGTTGGGACATCACTTCCTTTCTTTT
TGACTTGATATAAAGGATGATTTTCCCTTGACACGACAAATGGTCCTTCC
CATTTATGTGTAAGCTTTCGTGACAGATTCTTGACCTTTCTCTGTATGGT
AATGTAGACTTCATCTCCTATTTGGTGTCTGGTTGCATTCCTCACTGACC
TTAATCGTGAATATTCTTTGCTATCATCCAAGTTCGTCTTTACTTGCTGG
TGCAAATTATACAATTTTCTTTTGAGGTGATGCAGGTACTGATTTGGAGT
CTGGTAGTTCATCTCATCTTTAGAGATTGGGACTTCAGTAGGCTGCTGAG
CAATTCTTCCAAAGTTTATTTCAAACGGCGAGACTTTTTTGGTCTTGTTC
ACGGAGGATCGATATGCGAATAATACCAACGGGAGTTTTGCGTCCCAGTT
TCTTTGGTTCGTATCAATCAGGGTGGATAGACCATTTGCTATGACTCTAT
TGAATCTTTCTACTTGCCCATTCGACTTTGGTGAGTAAGGTGCTGTTTGT
AATTTCTTTATTCCAAGAATTCTGCACACTTCTTTCATTAAGCTACTGAT
GAAATTTGTTCCACAATCTGATAAAATGGTTGACAGGGTTGAAAACCTTG
CAATAACCTCGTTCACCAGGAGTGATGCAATGATTGGGGTTTCCGTTGTA
GCGACTGCAAAACATTCTGGCCATCCGCTAAATCGATCCACAAATGATAC
GATGTAGCGATTTCCACTATTGGTTTCAACAAAAGGACCTAGGACATCAA
CAGAAATGTCCTTCCACGGAGCACTTGCTTCTAAGGGATACAGTTCACAC
acctttttctttcctttgaaaatggCACATTTCTCGCATTGCTTCACTTT
TGTGATGATTTCCTTCATCATTTCTGGCCAGTAGTATTCAGACTTCAGCT
TTTGATAGACGATCTCTGAATTCAGGTGCCCTGCGAAAGGGGTGGCGTGG
CCTTCATGTATCAGTTGTTCTCGGTACTTTCTTGGAATACATAGACGCTT
CTCAATCTGGTTGTTTTTATTCACGATTCTGTGTAGAAAACCATTATCGT
CAAGATATAATTTGTCATTC
Run BLAST on NCBI

protein sequence of TCONS_00069107-protein

>TCONS_00069107-protein ID=TCONS_00069107-protein|Name=TCONS_00069107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp
NDKLYLDDNGFLHRIVNKNNQIEKRLCIPRKYREQLIHEGHATPFAGHLN
SEIVYQKLKSEYYWPEMMKEIITKVKQCEKCAIFKGKKKVCELYPLEASA
PWKDISVDVLGPFVETNSGNRYIVSFVDRFSGWPECFAVATTETPIIASL
LVNEVIARFSTLSTILSDCGTNFISSLMKEVCRILGIKKLQTAPYSPKSN
GQVERFNRVIANGLSTLIDTNQRNWDAKLPLVLFAYRSSVNKTKKVSPFE
INFGRIAQQPTEVPISKDEMNYQTPNQYLHHLKRKLYNLHQQVKTNLDDS
KEYSRLRSVRNATRHQIGDEVYITIQRKVKNLSRKLTHKWEGPFVVSREN
HPLYQVKKKGSDVPTRVHFDRMKPWKTIEELDGAATQEVPRNEAARKPNP
QAKEATLSQEKDGKAKNGYLPEDFYLVEKLIKHKKTRNGIRFLVKWLNYD
ENQNTWEPTENIPKEIIEEYWRSKARK
Run BLAST on NCBI

transcript from alignment at scaffold_493:15759..17428

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069107 ID=TCONS_00069107|Name=TCONS_00069107|organism=Clytia hemisphaerica|type=transcript|length=1670bp|location=Sequence derived from alignment at scaffold_493:15759..17428 (Clytia hemisphaerica)
GAATGACAAATTATATCTTGACGATAATGGTTTTCTACACAGAATCGTGA
ATAAAAACAACCAGATTGAGAAGCGTCTATGTATTCCAAGAAAGTACCGA
GAACAACTGATACATGAAGGCCACGCCACCCCTTTCGCAGGGCACCTGAA
TTCAGAGATCGTCTATCAAAAGCTGAAGTCTGAATACTACTGGCCAGAAA
TGATGAAGGAAATCATCACAAAAGTGAAGCAATGCGAGAAATGTGccatt
ttcaaaggaaagaaaaaggtGTGTGAACTGTATCCCTTAGAAGCAAGTGC
TCCGTGGAAGGACATTTCTGTTGATGTCCTAGGTCCTTTTGTTGAAACCA
ATAGTGGAAATCGCTACATCGTATCATTTGTGGATCGATTTAGCGGATGG
CCAGAATGTTTTGCAGTCGCTACAACGGAAACCCCAATCATTGCATCACT
CCTGGTGAACGAGGTTATTGCAAGGTTTTCAACCCTGTCAACCATTTTAT
CAGATTGTGGAACAAATTTCATCAGTAGCTTAATGAAAGAAGTGTGCAGA
ATTCTTGGAATAAAGAAATTACAAACAGCACCTTACTCACCAAAGTCGAA
TGGGCAAGTAGAAAGATTCAATAGAGTCATAGCAAATGGTCTATCCACCC
TGATTGATACGAACCAAAGAAACTGGGACGCAAAACTCCCGTTGGTATTA
TTCGCATATCGATCCTCCGTGAACAAGACCAAAAAAGTCTCGCCGTTTGA
AATAAACTTTGGAAGAATTGCTCAGCAGCCTACTGAAGTCCCAATCTCTA
AAGATGAGATGAACTACCAGACTCCAAATCAGTACCTGCATCACCTCAAA
AGAAAATTGTATAATTTGCACCAGCAAGTAAAGACGAACTTGGATGATAG
CAAAGAATATTCACGATTAAGGTCAGTGAGGAATGCAACCAGACACCAAA
TAGGAGATGAAGTCTACATTACCATACAGAGAAAGGTCAAGAATCTGTCA
CGAAAGCTTACACATAAATGGGAAGGACCATTTGTCGTGTCAAGGGAAAA
TCATCCTTTATATCAAGTCAAAAAGAAAGGAAGTGATGTCCCAACGCGAG
TTCATTTCGACAGAATGAAGCCATGGAAAACTATAGAAGAATTGGATGGT
GCAGCCACTCAAGAAGTTCCTAGAAATGAAGCTGCCAGAAAACCGAATCC
CCAAGCAAAAGAAGCCACTTTGTCGCAAGAGAAGGATGGCAAGGCGAAAA
ATGGCTATCTACCCGAAGATTTCTATCTAGTGGAAAAATTGATTAAACAC
AAGAAAACCAGAAATGGAATCAGGTTCCTGGTCAAATGGTTGAACTATGA
TGAGAATCAAAACACTTGGGAGCCAACGGAAAATATTCCTAAGGAAATAA
TAGAGGAATATTGGCGAAGCAAGGCAAGAAAATGAAATCCTTTGAATAAT
CAAACGAGCATCAAAAGCAAAAGAATGTTCGATTAAATTTCCTTATAAGG
AAAACGACATGACTAATAAATTATGAATTATAAAATGAATGAATGAATGA
TTTAAACGGAGATACAGTCGTGTTGAATAGAAGCCAAACTCAGAAGCTTT
TACCCGATATCAACAAGTTAAAGAGAATCACTTGGTACTTGAACAGATCT
TAGTGAAGATACAAGAGGAG

Coding sequence (CDS) from alignment at scaffold_493:15759..17428

>TCONS_00069107 ID=TCONS_00069107|Name=TCONS_00069107|organism=Clytia hemisphaerica|type=CDS|length=1434bp|location=Sequence derived from alignment at scaffold_493:15759..17428 (Clytia hemisphaerica)
AATGACAAATTATATCTTGACGATAATGGTTTTCTACACAGAATCGTGAA
TAAAAACAACCAGATTGAGAAGCGTCTATGTATTCCAAGAAAGTACCGAG
AACAACTGATACATGAAGGCCACGCCACCCCTTTCGCAGGGCACCTGAAT
TCAGAGATCGTCTATCAAAAGCTGAAGTCTGAATACTACTGGCCAGAAAT
GATGAAGGAAATCATCACAAAAGTGAAGCAATGCGAGAAATGTGccattt
tcaaaggaaagaaaaaggtGTGTGAACTGTATCCCTTAGAAGCAAGTGCT
CCGTGGAAGGACATTTCTGTTGATGTCCTAGGTCCTTTTGTTGAAACCAA
TAGTGGAAATCGCTACATCGTATCATTTGTGGATCGATTTAGCGGATGGC
CAGAATGTTTTGCAGTCGCTACAACGGAAACCCCAATCATTGCATCACTC
CTGGTGAACGAGGTTATTGCAAGGTTTTCAACCCTGTCAACCATTTTATC
AGATTGTGGAACAAATTTCATCAGTAGCTTAATGAAAGAAGTGTGCAGAA
TTCTTGGAATAAAGAAATTACAAACAGCACCTTACTCACCAAAGTCGAAT
GGGCAAGTAGAAAGATTCAATAGAGTCATAGCAAATGGTCTATCCACCCT
GATTGATACGAACCAAAGAAACTGGGACGCAAAACTCCCGTTGGTATTAT
TCGCATATCGATCCTCCGTGAACAAGACCAAAAAAGTCTCGCCGTTTGAA
ATAAACTTTGGAAGAATTGCTCAGCAGCCTACTGAAGTCCCAATCTCTAA
AGATGAGATGAACTACCAGACTCCAAATCAGTACCTGCATCACCTCAAAA
GAAAATTGTATAATTTGCACCAGCAAGTAAAGACGAACTTGGATGATAGC
AAAGAATATTCACGATTAAGGTCAGTGAGGAATGCAACCAGACACCAAAT
AGGAGATGAAGTCTACATTACCATACAGAGAAAGGTCAAGAATCTGTCAC
GAAAGCTTACACATAAATGGGAAGGACCATTTGTCGTGTCAAGGGAAAAT
CATCCTTTATATCAAGTCAAAAAGAAAGGAAGTGATGTCCCAACGCGAGT
TCATTTCGACAGAATGAAGCCATGGAAAACTATAGAAGAATTGGATGGTG
CAGCCACTCAAGAAGTTCCTAGAAATGAAGCTGCCAGAAAACCGAATCCC
CAAGCAAAAGAAGCCACTTTGTCGCAAGAGAAGGATGGCAAGGCGAAAAA
TGGCTATCTACCCGAAGATTTCTATCTAGTGGAAAAATTGATTAAACACA
AGAAAACCAGAAATGGAATCAGGTTCCTGGTCAAATGGTTGAACTATGAT
GAGAATCAAAACACTTGGGAGCCAACGGAAAATATTCCTAAGGAAATAAT
AGAGGAATATTGGCGAAGCAAGGCAAGAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043066XLOC_043066Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069107-proteinTCONS_00069107-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069107-exon-scaffold_493-1491911889:15759..17428TCONS_00069107-exon-scaffold_493-1491911889:15759..17428Clytia hemisphaericaexon
TCONS_00069107-exon-scaffold_493-1510915933:15759..17428TCONS_00069107-exon-scaffold_493-1510915933:15759..17428Clytia hemisphaericaexon
TCONS_00069107-exon-scaffold_493-1575043694:15759..17428TCONS_00069107-exon-scaffold_493-1575043694:15759..17428Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_493supercontigscaffold_493:15759..17428 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0258773	0.0312199	0.116911	0	0	0	0.0485174	0.0646	0.0838596	0.0137888	0.0443925	0.0364586	0.0747378	0	0	0	0	0.0278426	0	0.104287	0.0930738	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000953Chromo/chromo_shadow_dom
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
IPR023780Chromo_domain
IPR023779Chromodomain_CS
IPR016197Chromodomain-like
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00069107 vs. Swiss-Prot (Human)
Match: NYNRI (Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.549e-21
Identity = 83/341 (24.34%), Postives = 148/341 (43.40%), Query Frame = -2 
Query:  602 IPRKYREQLIHEGHATPFAGHLNSEIVYQKLKSEYYWPEMMKEIITKVKQCEKCA---IFKGKKKVCEL-YPLEASAPWKDISVDVLGPFVETNSGNRYIVSFVDRFSGWPECFAVATTETPIIASLLVNEVIARFSTLSTILSDCGTNFISSLMKEVCRILG--IKKLQTAPYSP--KSNGQVERFNRVIANGLSTLIDTNQRNWDAKLPLVLFAYRSSVNKTKKVSPFEINFGRIAQ--QPTEVPISKDEMNYQTPNQYLHHLKRKLYNLHQQVKTNLDDSKEYSRLRSVRNATRHQIGDEVYITIQRKVKNLSRK-LTHKWEGPFVV-SRENHPLYQV 1588
            +P + R  LI   H  P   H   E  Y+KL+   +WP M + +    + C  C    +   + KV E  +PL ++APW ++ ++V+GP   +  G+++++   D  + W E F +       +A +L+  V AR+     + +  G  F   ++      LG  +  L      P   S+G    F R     L   I  + + W A LPL+  A+R+S   +   +PF++  G  ++  +P    +S   +     + +L  L  +L  LH +V     +  E  R +         +GD+V +       +L R   + KW GPF +  R +  LY++
Sbjct: 1536 VPTQLRRDLIFSVHDIPLGAHQRPEETYKKLRLLGWWPGMQEHVKDYCRSCLFCIPRNLIGSELKVIESPWPLRSTAPWSNLQIEVVGPVTISEEGHKHVLIVADPNTRWVEAFPLKPYTHTAVAQVLLQHVFARWGVPVRLEAAQGPQFARHVLVSCGLALGAQVASLSRDLQFPCLTSSGAYWEFKR----ALKEFIFLHGKKWAASLPLLHLAFRAS---STDATPFKVLTGGESRLTEPLWWEMSSANIEGLKMDVFLLQLVGELLELHWRVADKASEKAENRRFKRESQEKEWNVGDQVLLL------SLPRNGSSAKWVGPFYIGDRLSLSLYRI 1863
The following BLAST results are available for this feature:
BLAST of TCONS_00069107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NYNRI1.549e-2124.34Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=2 SV=3[more]
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