TCONS_00069107-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00069107-protein
Unique Name	TCONS_00069107-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	477

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00069107-protein ID=TCONS_00069107-protein|Name=TCONS_00069107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp
NDKLYLDDNGFLHRIVNKNNQIEKRLCIPRKYREQLIHEGHATPFAGHLN
SEIVYQKLKSEYYWPEMMKEIITKVKQCEKCAIFKGKKKVCELYPLEASA
PWKDISVDVLGPFVETNSGNRYIVSFVDRFSGWPECFAVATTETPIIASL
LVNEVIARFSTLSTILSDCGTNFISSLMKEVCRILGIKKLQTAPYSPKSN
GQVERFNRVIANGLSTLIDTNQRNWDAKLPLVLFAYRSSVNKTKKVSPFE
INFGRIAQQPTEVPISKDEMNYQTPNQYLHHLKRKLYNLHQQVKTNLDDS
KEYSRLRSVRNATRHQIGDEVYITIQRKVKNLSRKLTHKWEGPFVVSREN
HPLYQVKKKGSDVPTRVHFDRMKPWKTIEELDGAATQEVPRNEAARKPNP
QAKEATLSQEKDGKAKNGYLPEDFYLVEKLIKHKKTRNGIRFLVKWLNYD
ENQNTWEPTENIPKEIIEEYWRSKARK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043066	XLOC_043066	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00069107	TCONS_00069107	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000953	Chromo/chromo_shadow_dom
IPR012337	RNaseH-like_dom
IPR001584	Integrase_cat-core
IPR023780	Chromo_domain
IPR023779	Chromodomain_CS
IPR016197	Chromodomain-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000953	Chromo/chromo shadow domain	SMART	SM00298	chromo_7	coord: 424..475 e-value: 1.5E-10 score: 51.0
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 425..477 score: 14.838
IPR012337	Ribonuclease H-like domain	GENE3D	3.30.420.10		coord: 94..295 e-value: 7.4E-42 score: 142.7
IPR012337	Ribonuclease H-like domain	SUPERFAMILY	53098	Ribonuclease H-like	coord: 97..250
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 103..212 e-value: 2.5E-16 score: 59.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 97..256 score: 21.342
None	No IPR available	GENE3D	2.40.50.40		coord: 412..477 e-value: 5.1E-15 score: 54.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 383..414
None	No IPR available	CDD	cd00024	CHROMO	coord: 425..472 e-value: 1.20531E-8 score: 50.7255
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 425..472 e-value: 1.1E-12 score: 47.6
IPR023779	Chromo domain, conserved site	PROSITE	PS00598	CHROMO_1	coord: 442..462
IPR016197	Chromo domain-like	SUPERFAMILY	54160	Chromo domain-like	coord: 415..475

Blast

[Close]

BLAST of TCONS_00069107-protein vs. Swiss-Prot (Human)
Match: NYNRI (Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 1.210e-21
Identity = 83/341 (24.34%), Postives = 148/341 (43.40%), Query Frame = 0

Query:   28 IPRKYREQLIHEGHATPFAGHLNSEIVYQKLKSEYYWPEMMKEIITKVKQCEKCA---IFKGKKKVCEL-YPLEASAPWKDISVDVLGPFVETNSGNRYIVSFVDRFSGWPECFAVATTETPIIASLLVNEVIARFSTLSTILSDCGTNFISSLMKEVCRILG--IKKLQTAPYSP--KSNGQVERFNRVIANGLSTLIDTNQRNWDAKLPLVLFAYRSSVNKTKKVSPFEINFGRIAQ--QPTEVPISKDEMNYQTPNQYLHHLKRKLYNLHQQVKTNLDDSKEYSRLRSVRNATRHQIGDEVYITIQRKVKNLSRK-LTHKWEGPFVV-SRENHPLYQV 356
            +P + R  LI   H  P   H   E  Y+KL+   +WP M + +    + C  C    +   + KV E  +PL ++APW ++ ++V+GP   +  G+++++   D  + W E F +       +A +L+  V AR+     + +  G  F   ++      LG  +  L      P   S+G    F R     L   I  + + W A LPL+  A+R+S   +   +PF++  G  ++  +P    +S   +     + +L  L  +L  LH +V     +  E  R +         +GD+V +       +L R   + KW GPF +  R +  LY++
Sbjct: 1536 VPTQLRRDLIFSVHDIPLGAHQRPEETYKKLRLLGWWPGMQEHVKDYCRSCLFCIPRNLIGSELKVIESPWPLRSTAPWSNLQIEVVGPVTISEEGHKHVLIVADPNTRWVEAFPLKPYTHTAVAQVLLQHVFARWGVPVRLEAAQGPQFARHVLVSCGLALGAQVASLSRDLQFPCLTSSGAYWEFKR----ALKEFIFLHGKKWAASLPLLHLAFRAS---STDATPFKVLTGGESRLTEPLWWEMSSANIEGLKMDVFLLQLVGELLELHWRVADKASEKAENRRFKRESQEKEWNVGDQVLLL------SLPRNGSSAKWVGPFYIGDRLSLSLYRI 1863

The following BLAST results are available for this feature:

BLAST of TCONS_00069107-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00069107-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NYNRI	1.210e-21	24.34	Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=2 SV=3	[more]

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TCONS_00069107-protein (polypeptide) - C. hemisphaerica