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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069106 ID=TCONS_00069106|Name=TCONS_00069106|organism=Clytia hemisphaerica|type=transcript|length=2184bp
AAGACTTCTCGTAGGTGTTCAAGATTTTCTTCAAACGTTTGACTGAAGAT
TACGATGTCGTCTATGAAAACAAGGACGCAGCGTCCTCTGATCTTCTGCA
GCACATCTTCCAGTAACTTCTCGAATGTACTGCTTGCTCCTTGCAAGCCA
AAGGGCATTCTGACGTACTCGAACAAACCCAAGTGACAGGTGAAGGCGGT
TGACGGTATCGATGACTCTTCCATTTTCACTTGATGAAATCCAGACATCA
GATCCATCGTTGAGAAGAACTTTACTCCATGCAGGGCAGCTAAGATATCA
GACGTGTTCGGGATAGGATACGCGAATTTTTTGGATGCTGTATTAATTTT
CCTGTAGTCAACACACATCCTCCAACCACCTCCTGGTTTAGTCACTAATA
CAATCGGACTACTGTATTCAGACTTAATTTCACGTATGATACCTTTCCGT
AGTAGATCTTGGACTTGACTCTCAATTTCCTTTCTCTTGAATGGTCCAAT
ACGGTAAGGCTGCTGTCGAATTGGCGTTGGATCCAATAGCTCAATTTTGT
GCTCTACTCTATCTGTTGAACCAAGTGGCTGCGATGCATCTGGAAACAGT
GCGCTGTACTCTTCAACAAGCTGATCaattttcttctcttgctcAGCATT
TAAGCAGCTCGATTATGGCACTAAGGTTGGCTTTATTTCGTTGTGTGGTG
GTAAGCTTGGATCTTGAGTGTCTTCCTCTGAATATCCTATTGGTGCAGAA
GCTTTGAACTCGATCTTGTCATCTGATACATTTGTGATGACGCAGACAGC
ACTGCCAGTTGATACTGGGTTCTTCTCTATGGAGGTGAACATGTTAACGC
TAAGTCCATCAGCTAGGGTCATCTTTCTGTAATCCTGGGAATGATCAAAG
CCCATGAATAATTGTTTACTCTCTCCAGGAGGGATATGCATGACTTCCTC
AGGTTTGTTATGCTCGGATATGTGGATGGCCACCTCGACTCTCTTCTTGT
TTAGTTCAAATGACATGCTTTGGTTTTGAAAGTCTACCTTTAAACCATGC
TGCTTCAGAAAATCCGCACCAATGATGGCATCTGTTGCGATACCTTCCAG
GACCAGAAATTTGTGAGTGATTGATACATCTTTTCCCACCATCATTTTCA
GGTTTACGAATCCCTTGGTGCGCAATGGCGTTCCAGAAGCACTCATTAAG
GATATCTTGGATTTTCCTTCAATATTCATGCGTAGTTTTTCCATCATTTG
AACGCTGATGATTGAGACAAGTGATCCAGTGTCAACCAGGAATTCTATTT
CCTTTTTATTGATTGCAAATTTGACCATGGGTAGGCCTAGTCATTCTTCT
GTGTTGTTGCCATCGAATCGTTGGTTTCGGAGCTTGGATCGACATCTGCT
GGCAATGTGGCCGATTTTGTCACATGCGTAACATTTCAGATTCTAGTGCT
TTTTGGTGAAACATTGGGATTCAACATGACCTTTCTTCTTGCAGAAACCA
CATGTTTTCTGCGCACTACCTTGGTTGTGCGACATTGTATTGACCGAGGA
TCTTTGTCTACTCCTTGATCCCCTCATTTGCTGCAATTGTCTTGTGATTC
TAACGTGATCAACGTCGTTGTTGTCCAGGTATCCGGCGTCTGGCCGTGCA
TGACTTTTCAAGAGCCTGATTATCTCCTGAACTCCAATGTTCTCTCCTTC
TGGTCGGTGGAGTGCATCTTTCAGCTGAATGTGTCTCACAGCCTCATCAT
AGGTTCTAGGCTGCCTCATCTGGAGCTGATAGCTGAGATTTGGTCTTCGG
TTTGCAACcagaatgtcaatttttgtggCATCGGGAGTTCCCAACTCCCC
GAAACACTGTTCGATCTTGGTCAGGTACTCTTCTAAATTCATATCTCCTT
GTTTCTCGGTGAACAGGATCATTCTTCTTTTTGCCAGCTCCTCTGGCGCG
TTAAAATGATCCATAAACTTGTCCTTACATTGCTTGTAATCCTTTTGCAC
TCCCGGTGTGAGAGTGTCATAGTAGGAGAGTGCTCGATTCACCAGACAGG
TTGGTAGGATCAGCGCTTTCTGATCATCTGTCCAGCCATTCAGGATTGCA
TAGCGCtcgaatttcataaaaaattgcTTTACAGTCAAGTTCTTGTCACC
GAATGTGGACAGATCAGTGATTCTGGTATTCAAC Run BLAST on NCBI protein sequence of TCONS_00069106-protein >TCONS_00069106-protein ID=TCONS_00069106-protein|Name=TCONS_00069106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
LNTRITDLSTFGDKNLTVKQFFMKFERYAILNGWTDDQKALILPTCLVNR
ALSYYDTLTPGVQKDYKQCKDKFMDHFNAPEELAKRRMILFTEKQGDMNL
EEYLTKIEQCFGELGTPDATKIDILVANRRPNLSYQLQMRQPRTYDEAVR
HIQLKDALHRPEGENIGVQEIIRLLKSHARPDAGYLDNNDVDHVRITRQL
QQMRGSRSRQRSSVNTMSHNQGSAQKTCGFCKKKGHVESQCFTKKH Run BLAST on NCBI transcript from alignment at scaffold_493:12351..14534 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069106 ID=TCONS_00069106|Name=TCONS_00069106|organism=Clytia hemisphaerica|type=transcript|length=2184bp|location=Sequence derived from alignment at scaffold_493:12351..14534 (Clytia hemisphaerica)
GTTGAATACCAGAATCACTGATCTGTCCACATTCGGTGACAAGAACTTGA
CTGTAAAgcaattttttatgaaattcgaGCGCTATGCAATCCTGAATGGC
TGGACAGATGATCAGAAAGCGCTGATCCTACCAACCTGTCTGGTGAATCG
AGCACTCTCCTACTATGACACTCTCACACCGGGAGTGCAAAAGGATTACA
AGCAATGTAAGGACAAGTTTATGGATCATTTTAACGCGCCAGAGGAGCTG
GCAAAAAGAAGAATGATCCTGTTCACCGAGAAACAAGGAGATATGAATTT
AGAAGAGTACCTGACCAAGATCGAACAGTGTTTCGGGGAGTTGGGAACTC
CCGATGccacaaaaattgacattctgGTTGCAAACCGAAGACCAAATCTC
AGCTATCAGCTCCAGATGAGGCAGCCTAGAACCTATGATGAGGCTGTGAG
ACACATTCAGCTGAAAGATGCACTCCACCGACCAGAAGGAGAGAACATTG
GAGTTCAGGAGATAATCAGGCTCTTGAAAAGTCATGCACGGCCAGACGCC
GGATACCTGGACAACAACGACGTTGATCACGTTAGAATCACAAGACAATT
GCAGCAAATGAGGGGATCAAGGAGTAGACAAAGATCCTCGGTCAATACAA
TGTCGCACAACCAAGGTAGTGCGCAGAAAACATGTGGTTTCTGCAAGAAG
AAAGGTCATGTTGAATCCCAATGTTTCACCAAAAAGCACTAGAATCTGAA
ATGTTACGCATGTGACAAAATCGGCCACATTGCCAGCAGATGTCGATCCA
AGCTCCGAAACCAACGATTCGATGGCAACAACACAGAAGAATGACTAGGC
CTACCCATGGTCAAATTTGCAATCAATAAAAAGGAAATAGAATTCCTGGT
TGACACTGGATCACTTGTCTCAATCATCAGCGTTCAAATGATGGAAAAAC
TACGCATGAATATTGAAGGAAAATCCAAGATATCCTTAATGAGTGCTTCT
GGAACGCCATTGCGCACCAAGGGATTCGTAAACCTGAAAATGATGGTGGG
AAAAGATGTATCAATCACTCACAAATTTCTGGTCCTGGAAGGTATCGCAA
CAGATGCCATCATTGGTGCGGATTTTCTGAAGCAGCATGGTTTAAAGGTA
GACTTTCAAAACCAAAGCATGTCATTTGAACTAAACAAGAAGAGAGTCGA
GGTGGCCATCCACATATCCGAGCATAACAAACCTGAGGAAGTCATGCATA
TCCCTCCTGGAGAGAGTAAACAATTATTCATGGGCTTTGATCATTCCCAG
GATTACAGAAAGATGACCCTAGCTGATGGACTTAGCGTTAACATGTTCAC
CTCCATAGAGAAGAACCCAGTATCAACTGGCAGTGCTGTCTGCGTCATCA
CAAATGTATCAGATGACAAGATCGAGTTCAAAGCTTCTGCACCAATAGGA
TATTCAGAGGAAGACACTCAAGATCCAAGCTTACCACCACACAACGAAAT
AAAGCCAACCTTAGTGCCATAATCGAGCTGCTTAAATGCTgagcaagaga
agaaaattGATCAGCTTGTTGAAGAGTACAGCGCACTGTTTCCAGATGCA
TCGCAGCCACTTGGTTCAACAGATAGAGTAGAGCACAAAATTGAGCTATT
GGATCCAACGCCAATTCGACAGCAGCCTTACCGTATTGGACCATTCAAGA
GAAAGGAAATTGAGAGTCAAGTCCAAGATCTACTACGGAAAGGTATCATA
CGTGAAATTAAGTCTGAATACAGTAGTCCGATTGTATTAGTGACTAAACC
AGGAGGTGGTTGGAGGATGTGTGTTGACTACAGGAAAATTAATACAGCAT
CCAAAAAATTCGCGTATCCTATCCCGAACACGTCTGATATCTTAGCTGCC
CTGCATGGAGTAAAGTTCTTCTCAACGATGGATCTGATGTCTGGATTTCA
TCAAGTGAAAATGGAAGAGTCATCGATACCGTCAACCGCCTTCACCTGTC
ACTTGGGTTTGTTCGAGTACGTCAGAATGCCCTTTGGCTTGCAAGGAGCA
AGCAGTACATTCGAGAAGTTACTGGAAGATGTGCTGCAGAAGATCAGAGG
ACGCTGCGTCCTTGTTTTCATAGACGACATCGTAATCTTCAGTCAAACGT
TTGAAGAAAATCTTGAACACCTACGAGAAGTCTT Coding sequence (CDS) from alignment at scaffold_493:12351..14534 >TCONS_00069106 ID=TCONS_00069106|Name=TCONS_00069106|organism=Clytia hemisphaerica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_493:12351..14534 (Clytia hemisphaerica)
TTGAATACCAGAATCACTGATCTGTCCACATTCGGTGACAAGAACTTGAC
TGTAAAgcaattttttatgaaattcgaGCGCTATGCAATCCTGAATGGCT
GGACAGATGATCAGAAAGCGCTGATCCTACCAACCTGTCTGGTGAATCGA
GCACTCTCCTACTATGACACTCTCACACCGGGAGTGCAAAAGGATTACAA
GCAATGTAAGGACAAGTTTATGGATCATTTTAACGCGCCAGAGGAGCTGG
CAAAAAGAAGAATGATCCTGTTCACCGAGAAACAAGGAGATATGAATTTA
GAAGAGTACCTGACCAAGATCGAACAGTGTTTCGGGGAGTTGGGAACTCC
CGATGccacaaaaattgacattctgGTTGCAAACCGAAGACCAAATCTCA
GCTATCAGCTCCAGATGAGGCAGCCTAGAACCTATGATGAGGCTGTGAGA
CACATTCAGCTGAAAGATGCACTCCACCGACCAGAAGGAGAGAACATTGG
AGTTCAGGAGATAATCAGGCTCTTGAAAAGTCATGCACGGCCAGACGCCG
GATACCTGGACAACAACGACGTTGATCACGTTAGAATCACAAGACAATTG
CAGCAAATGAGGGGATCAAGGAGTAGACAAAGATCCTCGGTCAATACAAT
GTCGCACAACCAAGGTAGTGCGCAGAAAACATGTGGTTTCTGCAAGAAGA
AAGGTCATGTTGAATCCCAATGTTTCACCAAAAAGCACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069106-exon-scaffold_493-1491911889:12351..14534 | TCONS_00069106-exon-scaffold_493-1491911889:12351..14534 | Clytia hemisphaerica | exon |
| TCONS_00069106-exon-scaffold_493-1510915933:12351..14534 | TCONS_00069106-exon-scaffold_493-1510915933:12351..14534 | Clytia hemisphaerica | exon |
| TCONS_00069106-exon-scaffold_493-1575043694:12351..14534 | TCONS_00069106-exon-scaffold_493-1575043694:12351..14534 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_493 | supercontig | scaffold_493:12351..14534 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR005162 | Retrotrans_gag_dom |
Blast
The following BLAST results are available for this feature:
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