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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069074 ID=TCONS_00069074|Name=TCONS_00069074|organism=Clytia hemisphaerica|type=transcript|length=2637bp
TTTTATAGAATAGTAAAATACTAAGAGCTGCTATTTAAAGAAGAACCAGA
AGAGACGTTTAGGGGAGAGCagtcgaaaatacaaaaaataatattCATTG
GTTGTTTACTTCAAGAATATGCATTGAAATGGGCAAGCCGACTATaaaCG
AGGCTTTCAATGGGTCAGGCCGTAGCAAATTCCTGACGTTAATGTCCAAA
ATACGGGCCACGCAAACGTTAGGAGCGACGTTGACCAGTAAAGGGAATCA
TGTACGTGCATCTGCAATGTACAAAAAACTAATCAATGACTCATTGAGTA
TGCGTGAACATTTTACGCGCCAACAGCAAAAGACGTTAGAAAGCGCGCTC
AGTTTTATGGACGCTGATCCTCCGCAAGacgaccaggctgtaaaccaagC
TTGGAAAATGCGTTCAGCTATTGATACGGTCTATGACGAATGTATATCCG
ACTTTAACGACGTTCAATCCGCCATGCCGTCGAATCTTCAATCCGTCATT
AAAGACACCATCAATCTGGCGTCGGATTGCGTTGCCAACGGTAACCTTTC
AAAAGCGTTTATGGAATATACTAAATTACTAAAACAGATGAAACAGAACC
AGAAATACAAAGATTTGGTGTCACTGACTGCAAAGAATTTGGTGGATGGT
TCTCTTTGCTTTGCAGAAACGAGTACAGAAGATATGTCCACTAAAGTCCG
CAAGTTACGCGACAGTCTGGATCGTGTCTATAATGAAATTCGCCTGCCCG
ATGTTTATGCACCCAGCTTGGGGCCATTGCAAAAATTGAACAAACGTGAG
AAGTGGCAAAAGAAGAAAGGTTTGATGGTGATTGATTTTCGACAGAAAGA
CGGTTCACTATTTCAGTACGGTATGACAACGTGCAATGATCGAGTGATGG
GCGGATCAAGTGAAGCCAACACACAATTCGATGAGGTCAAAGAATGCATC
GAATTTTCCGGATCCTTGTCTAAAAAAAACCGGGGTGGCTTTGCAAGTGT
TCGCATTCTACCAGATAATAAGGATGAAATGAAAGAATTGTTGAGTGGTA
CCAAAGCTATATCGTTAGAGGTAATGAACCTCGATACAAAAAATATTCGT
TACAAATTCCAAATGGCCAACGAGGCGCACTTGAAATCGTTTAATTGGCA
AGCTGAATTTATTGTAGAACCGGATGGCGAATGGCACACTGTTGTTTTGG
ATTTGTATTCTTTTTGGCCTACCATGTTTGGTCACGTGTTATCGTCTCCT
GGCAACGTAGATTTTAGTAAAGTGGACTTTCTTGGTGTATTGATCAGTCA
CGTGACAGTGGATGGGAAATTTAATCCGGACTTCGTAGAAGGTACTTTCG
GTTTAGGTGTGCGTTCGTTGAGCTTGatcaaagatgaagatgaaAGTTGA
CGCAAAGTTTACGGCGTATTTCCACTGTGTAACTTTTCTTTATTTAGCTT
TATTTGTGTATCTTGCAGGTGACGATATGTTTTTTTTCGTTTAATCtgtc
tttgttaaaagtgtaaaagttGTGTAtagaagaatttttttatctcgTGA
TGGAGTCACACATGCAATGAGAATGACGTCACAAAGGAGTCGTCACACAT
GCAATGAGAATGACGTCACAAATGAGTTGCCACACATGCAATGAGAATGA
CGTCACAAAGGACTTGTCACCATAAAGTACCtctcaattgttattttaac
NCAATGAGAATGACGTCACAAAGGACTTGTCACCATAAAGTACCTCTCAA
TTGTTATTGTAATGGCATCATCTCATCCCTGTTCCAACCAACGATTTAAC
TGGACAAGAAAGCAACGATTCTTCTTGAACTCCATACAAAGATATTATTT
GCCATGAACAATTTTAAATGGATTATTTTCATGCCCATAtaaagatttta
caaatttttggtattattttcagtttctatcttttgaaaatttcactaTT
CTATGTGGATCAGAATTGGGTCAATTAGGTGCCCTTTTCACATTCTGAGT
GAGTGTTGTTCATTCAAGATTACAAATTGTGATTACCAAATAAGTTCGAT
AACTTTCCGcgcttttttttcgaaagaatATGGTTTCTCTTTTGTAAGAT
GAATGAATAAGCTTGTTATCAGCATTTTTCATGTGCGAATTCTATTTTGA
TTCCACTTTtaaaaaccattaaaatttctttgggatttgaaataaatata
tctACTCTTGTGTATATAATAAGCTAAATTGGTCATTTTCTGAACAGTAT
TGGGCTGTTCTGTTTAATATCCATATGCTACCCTTCAGAATAACTTTAAG
CCCTCGCGAAATCAAAATTATTATTTCGCCCCTGGAAATAGATATAGAAA
GACCAACCAACCCCTTTGAAAAAATACANcatcatgacatttagtgacgt
ggtggtactgcaaaaaagctcaaaaatgattttagtaccatgtgtactaa
aataccaaaaagggtggtccccttaaaggaatttttgaaaaatcttagta
ttttgttttaaaatcagccaaaatggagcatttttttaacaattttggaa
aaaatttgattttttttttcaggaattttcgaaaaaatcttcagaatttt
tccaattttaaaaatatttttatgtacagttcagcaA Run BLAST on NCBI transcript from alignment at scaffold_493:190265..197291+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069074 ID=TCONS_00069074|Name=TCONS_00069074|organism=Clytia hemisphaerica|type=transcript|length=7027bp|location=Sequence derived from alignment at scaffold_493:190265..197291+ (Clytia hemisphaerica)
TTTTATAGAATAGTAAAATACTAAGAGCTGCTATTTAAAGAAGAACCAGA
AGAGACGTTTAGGGGAGAGCagtcgaaaatacaaaaaataatattCATTG
GTTGTTTACTTCAAGAATATGCATTGAAATGGGCAAGCCGACTATGTaag
atgatttttttaaattcctgCCTGGGAGGGGGGCACTGTCTGAAAACGGC
AAAACGACTCTATGTGCTGTATTTAGGATACTAATTATAACACATTTGGT
GTTAAATTGGACCCTTAAGaagaattaaaaataattttgccgaaaatcaa
GCCTAGTTTGCAATCTTTCCTATATCTTTCGAAATTAcactaatttcttt
ttttcccaaattttacgGTCCATATAATGCATGCTGTAATAAATCATAAT
CctgaattctttttcttttttaaaattcttagaaaCGAGGCTTTCAATGG
GTCAGGCCGTAGCAAATTCCTGACGTTAATGTCCAAAATACGGGCCACGC
AAACGTTAGGAGCGACGTTGACCAGTAAAGGGAATCATGTACGTGCATCT
GCAATGTACAAAAAACTAATCAATGACTCATTGAGTATGCGTGAACATTT
TACGCGCCAACAGCAAAAGACGTTAGAAAGCGCGCTCAGTTTTATGGACG
CTGATCCTCCGCAAGacgaccaggctgtaaaccaagCTTGGAAAATGCGT
TCAGCTATTGATACGGTCTATGACGAATGTATATCCGACTTTAACGACGT
TCAATCCGCCATGCCGTCGAATCTTCAATCCGTCATTAAAGACACCATCA
ATCTGGCGTCGGATTGCGTTGCCAACGGTAACCTTTCAAAAGCGTTTATG
GAATATACTAAATTACTAAAACAGATGAAACAGAACCAGAAATACAAAGA
TTTGGTGTCACTGACTGCAAAGAATTTGGTGGATGGTTCTCTTTGCTTTG
CAGAAACGAGTACAGAAGATATGTCCACTAAAGTCCGCAAGTTACGCGAC
AGTCTGGATCGTGTCTATAATGAAATTCGCCTGCCCGATGTTTATGCACC
CAGCTTGGGGCCATTGGTAAGTGTTTGGTACTTTCTTCTTCCAAAATTCT
AGACTAGCCGAATCAGATTGTTTTACTTAGACAAATATAGTCTTTTTGAA
CTGCATCATTGTCGGCCTCGTTCTCAAATAAAACACCAGCGCACAACGag
agaaaaaattttggggATTTTTCAGAATGCGTTATcgtggaaaattgaaa
aactgcCACCCCGCCAAAACATTTATCGCCATAATTTTTAGTTTgttcat
ttcaaaaaatgctcatttttttggttaaaaaaagaaCCGACTCACCCTTC
tttatttagtgattttgaTGCATACCAAAAAAAGTTCGTCCCTTAGATAT
GTTACCAATTTCTTAAGTCTTAAGTTAACGCAGAGGAATATTCGTTCTTt
tagtttgttttcttttaccTGCGTATATACTTCTCGTGATGAAAATTTCC
ATCATGTTTTTCTTACATTCGGAAGCCTCTTGTGGTGAGATATTGACGTC
TGTTTATTCTTATGAGAGCAACGAGGCAACATGATTGAAGCTATGAGACC
ACATACATACATGCATAGTTTAGGCAAAAACTTTAAGCGGGACGATAACC
CCTATGGACGCTACCTATCCTTTTTTCTATCAAACCATAAAATTGATTTT
CCAAATCTCCTAATTTTCCTGGAATCGAGGTATCAAAATAATGAGCTTTT
TGGCATTGCTTGCTTGACTTTTGATtgaaatagtcctgaatgaaGTCTAG
TAAATTTTGTGGCAAATAGGAAATTGCCATCCTGACATTTGAAATTCGCT
AAAAATTCTACTCCCTTCGCTTGCAATCCAGATCTTTCGACATTCTGATA
TTTCTCATTCTTTTTTACTAAGCTATCTAGCCTTACCAATGAcctttagg
gaaatactgaaaactTTTCCAATAGTTTCTGATAGTTTTAAAATGTCTGG
AAAAATGTGGCTTTTGAGACTAAAAGTTTGGAATTTCCAGCTTGGCGAAC
CCGTAGCAACCCTGAACagaacatgataagaatacttttaggctttaaaa
tcaaaaagttaaaaacatccaaaggctttcaaaaattttcgatattctta
taaaaaagagcgtGTATTTAGTTACCTCTATTTCAAGATCTCGTTAAATT
TGACTTTATTCAATTTTGTGGTGTAATTTGATATCAAGATTGGTACTTAG
ATGATTCCGACAAGactaataaaaaaagttttcattggGATAATGATTCT
GCATTGTCAATTATTATTCAGGGATTTATTTGAGGAAATAGAACAAATTT
AACATGAAAAGTAACATTTCGCGAATTTTCTATATGCATGACAAAAATga
tcatgatttttttttgttacctGTTATTTTACTTCCTGTCGAATTGCAAA
ACTCCTTTTCTATTGTCGAACACGGTTTGTCATGTCAATAAATTGTAATT
ATCTATAATTGCCTCATTGTCGTTTACtatacattttttaaaacaCTCTT
TTAATCAAAAATGTTTTATGTTGGTGTTGACGTCAGAGTCGTTGTGGtat
cattaaaaaatttcaaaatgtttttttgtaaaagtaatCAGCGTACAATT
AATTGAACCCAATTGATTTCCATATGAAATGAAACAGGCCCAATATGATG
CAAACCAAATATTTCTTGCAACCTAGTTGCTGAAAAATACATACATAGTA
TTTTGTTGCCTCCAATTTTTATTATTCTTAAGTATCTGAATTTGAACAGC
CTTGCCTAAACCCAGTTCCTAAAGTTAAGACCGAAAGTTGTGATTTagca
cccctgtgtcatagacccgctggaaccccagccccactcgaaaatttggc
taaaagttcgttcccggtgggaaaaataccataGAATTTCGgacccactg
ggaaattgactttgatttcacccccattcgaaattcaatgtttaaaaatt
gcactccaaaaccatccatactggatttttggacctaccccggtggaggt
cctataaattaacctttgtccgttcgttagttaccagcttttctcaagat
tggctcattagttttttataattttttgcgcaaagatgtgtaactataaa
ccctcaaatgtgaccgagcccgattttcgaaaaaaaaaagatttctgcct
cagaaaatatacagtgggaaattcgaatttagcgctgtcctcacttacta
aaataaaaaccaaatttcggaagttacgctttctctaagaaagtaaaaga
ataacaaaatttgattggctgtgttttcaaccgtcattaggatctgggaa
attcaaactctcaacccaaaccatgctatatatttcaccATCAGTacata
gaataagaaatcatagcatggatctccaggctaggaAAGGtatcaccggg
gctgtgagacaggggtgtgatttAGGGCATGAACCAGGGATCATATACCT
TTGACGGGTACATACATTACGTGGAAAATAACATgtacttttttcatatt
gacaAATCTCAATTGCCCTTAACCAAAGTGCCATGGAAATAACAAtaagt
gtttattttttctattacGAATAACGAAGCAACAATAATAATGATACCAT
TCAAAACGATCGGTATgtaaaagaaaacattaaattgGTTTCCTTTAtat
tgactgtttttttaaagaagtcaaGGTCAGGGAATCCCCTCTGttcatta
cacgttttttttataaggaacacgtatatagggaacttgaggctgaaaac
gGTCTGAAAAAATAAGGTATTGTTAAGGGACTACTCAGGATGagaacaac
aaaaaaacttaaGGAACAGACGGTTAAACTTGAATTTGCTCTCATTTACA
AAAACCTAAACAGATAGATGGCAAAATATTGATGAAAAAACATTCAATAA
GTAtcaattcgaactaaaacattggtctcatcgaatttttctctaattcg
aagaagattcttcatgccttgaaaatcgaattagagagagtcaactgtat
atttttatttttttcacatgcttgtttaaaaaaaagccGAACAAGATTAA
AATTGATGTTCATATTCGGTTGGTTCGGTTGGGAGTCTCCCCGAGCGGTA
ACTCTGGTCACGATACCACGCAATTTTTTGTACTCGGTCACGTTCAcgca
aatcaacaaaaaaaatggataatcacgcatccctttgaaaaaaagttcga
atcacgcatcacggctcaatctttcaaatcacTGATCACGTTTTGAGCTC
TGATCACGCAAGCACGAAAAAATGTACCTATCATTACATCACGCAGATCT
CTTCGGACTTACGATAAGGCCTCTCCGAATTCACAATAGTTTTAAACTTG
TTTTCATTCTGATTTCAGCAAAAATTGAACAAACGTGAGAAGTGGCAAAA
GAAGAAAGGTTTGATGGTGATTGATTTTCGACAGAAAGACGGTTCACTAT
TTCAGTACGGTATGACAACGTGCAATGATCGAGTGATGGGCGGATCAAGT
GAAGCCAACACACAATTCGATGAGGTTCGTGTGATAAAGTTCGCATTACC
TTATtgcacgaatattactagtcattttattaacacgatttgaaaaattt
catgttgataaaaaaacccttaattaaaaccaaccATTTTCATTACTAca
tgttaacgaccaaccaaatccaataagatcttgtaaaaactccagcttgg
cCCTTGcaaaagcaataaaattcgtgttaatttttggCGTGTTAATCTAT
AGGGCGTTAAATACATCTTTACttatattcgtgtaataaggtataaagaa
atttttataaaaaaattaaattaaaatcgAGGGACCTTTGTTGAAAGCTA
ATTTATACATATATAACGCTGCCTGATCTCCATTTGAATATCATTGACCT
GGCTTTAAATAGGCTTTTTGATTTTGTCCCTTGAGacatgaaatgatttt
tttatgaatcgaaagtagttttgataaaatccgaTGGGAGttgatcacca
tggcaataatttcaaaacgagacaagtgttgttcgtgacgtaatttatga
aaaggtctattaaattTGTGACAACCCTTATATTTTCTAGGTCAAAGAAT
GCATCGAATTTTCCGGATCCTTGTCTAAAAAAAACCGGGGTGGCTTTGCA
AGTGTTCGCATTCTACCAGATAATAAGGATGAAATGAAAGAATTGTTGAG
TGGTACCAAAGCTATATCGTTAGAGGTAATGAACCTCGATACAAAAAATA
TTCGTTACAAATTCCAAATGGCCAACGAGGCGCACTTGAAATCGTTTAAT
TGGCAAGCTGAATTTATTGTAGAACCGGATGGCGAATGGCACACTGTTGT
TTTGGATTTGTATTCTTTTTGGCCTACCATGTTTGGTCACGTGTTATCGT
CTCCTGGCAACGTAGATTTTAGTAAAGTGGACTTTCTTGGTGTATTGATC
AGTCACGTGACAGTGGATGGGAAATTTAATCCGGACTTCGTAGAAGGTAC
TTTCGGTTTAGGTGTGCGTTCGTTGAGCTTGatcaaagatgaagatgaaA
GTTGACGCAAAGTTTACGGCGTATTTCCACTGTGTAACTTTTCTTTATTT
AGCTTTATTTGTGTATCTTGCAGGTGACGATATGTTTTTTTTCGTTTAAT
CtgtctttgttaaaagtgtaaaagttGTGTAtagaagaatttttttatct
cgTGATGGAGTCACACATGCAATGAGAATGACGTCACAAAGGAGTCGTCA
CACATGCAATGAGAATGACGTCACAAATGAGTTGCCACACATGCAATGAG
AATGACGTCACAGATGAGTCGCCACACATGCAATGAGAATGACGTCACAA
AGGAGTCGTCACACATGCAATGAGAATGACTTCACAAAGGAGTCGTCACA
CATGCAATGAGAATGACTTCACAAAGGAGTCGTCACACATGCAATGAGAA
TGACGTCACAAAGGAGTCGTCACACATGCAATGAGAATGACGTCACAAAG
GACTTGTCACCATAAAGTACCtctcaattgttattttaacNCAATGAGAA
TGACGTCACAAAGGACTTGTCACCATAAAGTACCTCTCAATTGTTATTGT
AATGGCATCATCTCATCCCTGTTCCAACCAACGATTTAACTGGACAAGAA
AGCAACGATTCTTCTTGAACTCCATACAAAGATATTATTTGCCATGAACA
ATTTTAAATGGATTATTTTCATGCCCATAtaaagattttacaaatttttg
gtattattttcagtttctatcttttgaaaatttcactaTTCTATGTGGAT
CAGAATTGGGTCAATTAGGTGCCCTTTTCACATTCTGAGTGAGTGTTGTT
CATTCAAGATTACAAATTGTGATTACCAAATAAGTTCGATAACTTTCCGc
gcttttttttcgaaagaatATGGTTTCTCTTTTGTAAGATGAATGAATAA
GCTTGTTATCAGCATTTTTCATGTGCGAATTCTATTTTGATTCCACTTTt
aaaaaccattaaaatttctttgggatttgaaataaatatatctACTCTTG
TGTATATAATAAGCTAAATTGGTCATTTTCTGAACAGTATTGGGCTGTTC
TGTTTAATATCCATATGCTACCCTTCAGAATAACTTTAAGCCCTCGCGAA
ATCAAAATTATTATTTCGCCCCTGGAAATAGATATAGAAAGACCAACCAA
CCCCTTTGAAAAAATACANcatcatgacatttagtgacgtggtggtactg
caaaaaagctcaaaaatgattttagtaccatgtgtactaaaataccaaaa
agggtggtccccttaaaggaatttttgaaaaatcttagtattttgtttta
aaatcagccaaaatggagcatttttttaacaattttggaaaaaatttgat
tttttttttcaggaattttcgaaaaaatcttcagaatttttccaatttta
aaaatatttttatgtacagttcagcaA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069074-exon-scaffold_493-1491911889:190265..190409 | TCONS_00069074-exon-scaffold_493-1491911889:190265..190409 | Clytia hemisphaerica | exon |
| TCONS_00069074-exon-scaffold_493-1510915933:190265..190409 | TCONS_00069074-exon-scaffold_493-1510915933:190265..190409 | Clytia hemisphaerica | exon |
| TCONS_00069074-exon-scaffold_493-1575043694:190265..190409 | TCONS_00069074-exon-scaffold_493-1575043694:190265..190409 | Clytia hemisphaerica | exon |
| TCONS_00069074-exon-scaffold_493-1491911889:190697..191330 | TCONS_00069074-exon-scaffold_493-1491911889:190697..191330 | Clytia hemisphaerica | exon |
| TCONS_00069074-exon-scaffold_493-1510915933:190697..191330 | TCONS_00069074-exon-scaffold_493-1510915933:190697..191330 | Clytia hemisphaerica | exon |
| TCONS_00069074-exon-scaffold_493-1575043694:190697..191330 | TCONS_00069074-exon-scaffold_493-1575043694:190697..191330 | Clytia hemisphaerica | exon |
| TCONS_00069074-exon-scaffold_493-1491911889:194683..194838 | TCONS_00069074-exon-scaffold_493-1491911889:194683..194838 | Clytia hemisphaerica | exon |
| TCONS_00069074-exon-scaffold_493-1510915933:194683..194838 | TCONS_00069074-exon-scaffold_493-1510915933:194683..194838 | Clytia hemisphaerica | exon |
| TCONS_00069074-exon-scaffold_493-1575043694:194683..194838 | TCONS_00069074-exon-scaffold_493-1575043694:194683..194838 | Clytia hemisphaerica | exon |
| TCONS_00069074-exon-scaffold_493-1491911889:195405..196104 | TCONS_00069074-exon-scaffold_493-1491911889:195405..196104 | Clytia hemisphaerica | exon |
| TCONS_00069074-exon-scaffold_493-1510915933:195405..196104 | TCONS_00069074-exon-scaffold_493-1510915933:195405..196104 | Clytia hemisphaerica | exon |
| TCONS_00069074-exon-scaffold_493-1575043694:195405..196104 | TCONS_00069074-exon-scaffold_493-1575043694:195405..196104 | Clytia hemisphaerica | exon |
| TCONS_00069074-exon-scaffold_493-1491911889:196290..197291 | TCONS_00069074-exon-scaffold_493-1491911889:196290..197291 | Clytia hemisphaerica | exon |
| TCONS_00069074-exon-scaffold_493-1510915933:196290..197291 | TCONS_00069074-exon-scaffold_493-1510915933:196290..197291 | Clytia hemisphaerica | exon |
| TCONS_00069074-exon-scaffold_493-1575043694:196290..197291 | TCONS_00069074-exon-scaffold_493-1575043694:196290..197291 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_493 | supercontig | scaffold_493:190265..197291 + |
Blast
The following BLAST results are available for this feature:
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