TCONS_00069066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069066
Unique NameTCONS_00069066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069066 ID=TCONS_00069066|Name=TCONS_00069066|organism=Clytia hemisphaerica|type=transcript|length=228bp
GGAACAAAAGTTTACAGGGAGCACTGGTTGGACCAATTCTGGAAGACGTT
CTTGGATAGACAGTCAGCCCATTGATGGAGTTCATAAGTTGAAAACTTGA
CTAAACACGGCAAGAAAATTGTCCGGTCATCGCCAAAGCACTTTGAATTA
AACAACCACAATTGTATCCGGAGCTTATATATATGAAATTTCTTCTATta
tatgaaatatataaaaatgtgTGGCTTC
Run BLAST on NCBI

transcript from alignment at scaffold_493:140535..141287+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069066 ID=TCONS_00069066|Name=TCONS_00069066|organism=Clytia hemisphaerica|type=transcript|length=753bp|location=Sequence derived from alignment at scaffold_493:140535..141287+ (Clytia hemisphaerica)
GGAACAAAAGTTTACAGGTAAGTCTTAGACAAGATTGAAACCCTGCACAA
AATGTTTCCTTTGAACAATGAAAGTTGCTTTACCTTACTGGGAGTATGCA
AGTCATATTTACAGGgagcacccctgtctcaattttCCGTAAACCATGTT
TTGGTGGATTAGTTTATATGCTTAAAATTTGATGGGGCCGGTTGAGAATA
TCTATTGAAAAAACACCTGTCTCAGTGAACCGATGCAGTTTTTAAAACCA
CTGGGGTGGCTATCAAGGCTGCTCTAATTGCGTTTTTGACCGGGAGAAAA
CAATACTATTTCAAAGTTTTGGCCGGGGtaagaaatttcaataaaatttg
acCAGGTTCGAACTTGTCTTCCAACGAAAACTTAAAATCAGTTcggtcaa
ttttggcaatttatttCACCAGGTTATCCAGCGAGATGGATCTCACTGGG
TCACTGATAGTGATACAGGAAGTGGAAGACGAACGCAATGAAGTAGTTTC
ATATCAAAATCCTTTTAATTTATTCGTCGTCTTTTATTAAAGGGAGCACT
GGTTGGACCAATTCTGGAAGACGTTCTTGGATAGACAGTCAGCCCATTGA
TGGAGTTCATAAGTTGAAAACTTGACTAAACACGGCAAGAAAATTGTCCG
GTCATCGCCAAAGCACTTTGAATTAAACAACCACAATTGTATCCGGAGCT
TATATATATGAAATTTCTTCTATtatatgaaatatataaaaatgtgTGGC
TTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043046XLOC_043046Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069066-exon-scaffold_493-1491911889:140535..140551TCONS_00069066-exon-scaffold_493-1491911889:140535..140551Clytia hemisphaericaexon
TCONS_00069066-exon-scaffold_493-1510915933:140535..140551TCONS_00069066-exon-scaffold_493-1510915933:140535..140551Clytia hemisphaericaexon
TCONS_00069066-exon-scaffold_493-1575043694:140535..140551TCONS_00069066-exon-scaffold_493-1575043694:140535..140551Clytia hemisphaericaexon
TCONS_00069066-exon-scaffold_493-1491911889:141077..141287TCONS_00069066-exon-scaffold_493-1491911889:141077..141287Clytia hemisphaericaexon
TCONS_00069066-exon-scaffold_493-1510915933:141077..141287TCONS_00069066-exon-scaffold_493-1510915933:141077..141287Clytia hemisphaericaexon
TCONS_00069066-exon-scaffold_493-1575043694:141077..141287TCONS_00069066-exon-scaffold_493-1575043694:141077..141287Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_493supercontigscaffold_493:140535..141287 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09053	1.06344	1.23475	4.83205	1.47064	4.64847	2.80409	0	4.59483	2.51996	6.6291	1.45257	2.9011	0	2.47695	0	0.818655	1.67819	0	1.21308	2.10877	1.54287	2.50075	1.13677	5.85426	5.22478	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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