TCONS_00069057 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069057
Unique NameTCONS_00069057
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1023

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069057 ID=TCONS_00069057|Name=TCONS_00069057|organism=Clytia hemisphaerica|type=transcript|length=1023bp
agagaATGATACTGCATATATTTATCCATGGTCTCCAACCAAATATCTCT
TATATGGAAAATACACGGAAGAGGAGCTAATGGAAAAACGTAAGAAACGG
AAAACGGAACAATCAGAACAAAATGTTGTGTCTATAttaaaaaggccaaa
aaatacTGATGAAGATTCTTCCTCCAAGGCAACGTCTTCCGGCGTCAGAT
TACTGGAAGAAATCGTTATGGAGGAAGCAAACCCAAAACATCCTAAACTT
CCATCCATGGCTGTATTTTCACCAAATCAACACAAAGATTTACTTACAAA
CATACCCAAAGACAACATCACGAGAAGTCGggcaaaatcaaaatctaaga
AACGGAATATTAAAGGACTGGATTCTAGTTTTTCGTTGATTGGTCAAACG
ATTTCGAGAACCNAGAAACGGAATATTAAAGGACTGGACTCTAGTTTTAC
GTTGATTGGTCAAACGATTTCGAGAACTGAAAATGATGGTTTGCCACAGC
TGCCTTCACCAAAAAAACTCAACGAATCTGTTTTTGGTTGTTTGCGAAAC
ATTGAGGGCGTAGTGACATCGAAACACAATAAAACGCCCCATGACGTGTC
ATATAAAATGCCGCCCATAAGCCAAGTACCAAGAAAACCATTGATTAAAA
CACAGATCAATAAAATATATACAATGAATACGACTTCAAATTTGGAGAAC
TTGAATTACCTTGCTGAAGAGGAATTTGAAGTCCCTTTCCCATTGATTTC
TGCTGATCGATCAAAAAGAACTTTGATTCACCAGAGACAAGAGAAACAGG
GCGTACTAAGAAGAAGATAAAAGTGATTTTGTACATGTTTCATagaattt
tacaaaaagaattgagatgagctggagtttttataagatgcttccctaat
ttagtcatttttgccacttgttAGGGtagaaattggaaaattgtgTTCTG
ACAGGTCACCATTTTACAAAAATACctatctgacagggtcaactTTTCGA
ACTctagcggcacgtccccgtcg
Run BLAST on NCBI

protein sequence of TCONS_00069057-protein

>TCONS_00069057-protein ID=TCONS_00069057-protein|Name=TCONS_00069057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
ENDTAYIYPWSPTKYLLYGKYTEEELMEKRKKRKTEQSEQNVVSILKRPK
NTDEDSSSKATSSGVRLLEEIVMEEANPKHPKLPSMAVFSPNQHKDLLTN
IPKDNITRSRAKSKSKKRNIKGLDSSFSLIGQTISRTXKRNIKGLDSSFT
LIGQTISRTENDGLPQLPSPKKLNESVFGCLRNIEGVVTSKHNKTPHDVS
YKMPPISQVPRKPLIKTQINKIYTMNTTSNLENLNYLAEEEFEVPFPLIS
ADRSKRTLIHQRQEKQGVLRRR
Run BLAST on NCBI

transcript from alignment at scaffold_492:153372..154394

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069057 ID=TCONS_00069057|Name=TCONS_00069057|organism=Clytia hemisphaerica|type=transcript|length=1023bp|location=Sequence derived from alignment at scaffold_492:153372..154394 (Clytia hemisphaerica)
cgacggggacgtgccgctagAGTTCGAAAagttgaccctgtcagatagGT ATTTTTGTAAAATGGTGACCTGTCAGAAcacaattttccaatttctaCCC Taacaagtggcaaaaatgactaaattagggaagcatcttataaaaactcc agctcatctcaattctttttgtaaaattctATGAAACATGTACAAAATCA CTTTTATCTTCTTCTTAGTACGCCCTGTTTCTCTTGTCTCTGGTGAATCA AAGTTCTTTTTGATCGATCAGCAGAAATCAATGGGAAAGGGACTTCAAAT TCCTCTTCAGCAAGGTAATTCAAGTTCTCCAAATTTGAAGTCGTATTCAT TGTATATATTTTATTGATCTGTGTTTTAATCAATGGTTTTCTTGGTACTT GGCTTATGGGCGGCATTTTATATGACACGTCATGGGGCGTTTTATTGTGT TTCGATGTCACTACGCCCTCAATGTTTCGCAAACAACCAAAAACAGATTC GTTGAGTTTTTTTGGTGAAGGCAGCTGTGGCAAACCATCATTTTCAGTTC TCGAAATCGTTTGACCAATCAACGTAAAACTAGAGTCCAGTCCTTTAATA TTCCGTTTCTNGGTTCTCGAAATCGTTTGACCAATCAACGAAAAACTAGA ATCCAGTCCTTTAATATTCCGTTtcttagattttgattttgccCGACTTC TCGTGATGTTGTCTTTGGGTATGTTTGTAAGTAAATCTTTGTGTTGATTT GGTGAAAATACAGCCATGGATGGAAGTTTAGGATGTTTTGGGTTTGCTTC CTCCATAACGATTTCTTCCAGTAATCTGACGCCGGAAGACGTTGCCTTGG AGGAAGAATCTTCATCAgtattttttggcctttttaaTATAGACACAACA TTTTGTTCTGATTGTTCCGTTTTCCGTTTCTTACGTTTTTCCATTAGCTC CTCTTCCGTGTATTTTCCATATAAGAGATATTTGGTTGGAGACCATGGAT AAATATATGCAGTATCATtctct

Coding sequence (CDS) from alignment at scaffold_492:153372..154394

>TCONS_00069057 ID=TCONS_00069057|Name=TCONS_00069057|organism=Clytia hemisphaerica|type=CDS|length=819bp|location=Sequence derived from alignment at scaffold_492:153372..154394 (Clytia hemisphaerica)
TTATCTTCTTCTTAGTACGCCCTGTTTCTCTTGTCTCTGGTGAATCAAAG
TTCTTTTTGATCGATCAGCAGAAATCAATGGGAAAGGGACTTCAAATTCC
TCTTCAGCAAGGTAATTCAAGTTCTCCAAATTTGAAGTCGTATTCATTGT
ATATATTTTATTGATCTGTGTTTTAATCAATGGTTTTCTTGGTACTTGGC
TTATGGGCGGCATTTTATATGACACGTCATGGGGCGTTTTATTGTGTTTC
GATGTCACTACGCCCTCAATGTTTCGCAAACAACCAAAAACAGATTCGTT
GAGTTTTTTTGGTGAAGGCAGCTGTGGCAAACCATCATTTTCAGTTCTCG
AAATCGTTTGACCAATCAACGTAAAACTAGAGTCCAGTCCTTTAATATTC
CGTTTCTNGGTTCTCGAAATCGTTTGACCAATCAACGAAAAACTAGAATC
CAGTCCTTTAATATTCCGTTtcttagattttgattttgccCGACTTCTCG
TGATGTTGTCTTTGGGTATGTTTGTAAGTAAATCTTTGTGTTGATTTGGT
GAAAATACAGCCATGGATGGAAGTTTAGGATGTTTTGGGTTTGCTTCCTC
CATAACGATTTCTTCCAGTAATCTGACGCCGGAAGACGTTGCCTTGGAGG
AAGAATCTTCATCAgtattttttggcctttttaaTATAGACACAACATTT
TGTTCTGATTGTTCCGTTTTCCGTTTCTTACGTTTTTCCATTAGCTCCTC
TTCCGTGTATTTTCCATATAAGAGATATTTGGTTGGAGACCATGGATAAA
TATATGCAGTATCATtctc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043043XLOC_043043Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069057-proteinTCONS_00069057-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069057-exon-scaffold_492-1491911889:153372..154394TCONS_00069057-exon-scaffold_492-1491911889:153372..154394Clytia hemisphaericaexon
TCONS_00069057-exon-scaffold_492-1510915933:153372..154394TCONS_00069057-exon-scaffold_492-1510915933:153372..154394Clytia hemisphaericaexon
TCONS_00069057-exon-scaffold_492-1575043694:153372..154394TCONS_00069057-exon-scaffold_492-1575043694:153372..154394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_492supercontigscaffold_492:153372..154394 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0.109586 0.0553221 0 0.0698752 1.20221 0.505384 0 0 0.566839 0.187919 3.27133 3.90119 0.662639 0.495365 0 0.355807 0.755825 0.378347 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top