TCONS_00069044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069044
Unique NameTCONS_00069044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069044 ID=TCONS_00069044|Name=TCONS_00069044|organism=Clytia hemisphaerica|type=transcript|length=469bp
AGATTGTCTCCATTAAATTCTGCAAAGAAGAACCAGATGCTGTTTTCTTT
AAGTCCACTACACCGAGGAATATCGCAAGGCCATTTTCAAGCAACCCATC
CGAGAATTGAGAAAGGGTGATGAAAGTCGAGATGAATTGATGAAAAAGTA
TCACGAGCCATGTGGAGTAACTCAGAAGAAGAAAGACGACTTACTTACAT
TGTGCAAAAAACAACTTATTCCAAGCAGACATCATCGTTACTATGAAACC
CTTCCAGTTACCAAGAAATCTGTCCTTAAGTAAGACCTTGATTACTGTAT
ATGAAAGATTTCTAGTCCATGTTGatatattttattcaattattATTACG
ACTGTTTTGTTTAGCCTTAACTAAATCTGCATAGATTATCTTTAGCCTAT
TTACATTTTGTTATTCTAGCTATTTTTCAGTTTTCTGTATATTAAAACTT
ATATGATTTCTCAGAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_492:33748..34216

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069044 ID=TCONS_00069044|Name=TCONS_00069044|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at scaffold_492:33748..34216 (Clytia hemisphaerica)
ATTTTCTGAGAAATCATATAAGTTTTAATATACAGAAAACTGAAAAATAG
CTAGAATAACAAAATGTAAATAGGCTAAAGATAATCTATGCAGATTTAGT
TAAGGCTAAACAAAACAGTCGTAATaataattgaataaaatatatCAACA
TGGACTAGAAATCTTTCATATACAGTAATCAAGGTCTTACTTAAGGACAG
ATTTCTTGGTAACTGGAAGGGTTTCATAGTAACGATGATGTCTGCTTGGA
ATAAGTTGTTTTTTGCACAATGTAAGTAAGTCGTCTTTCTTCTTCTGAGT
TACTCCACATGGCTCGTGATACTTTTTCATCAATTCATCTCGACTTTCAT
CACCCTTTCTCAATTCTCGGATGGGTTGCTTGAAAATGGCCTTGCGATAT
TCCTCGGTGTAGTGGACTTAAAGAAAACAGCATCTGGTTCTTCTTTGCAG
AATTTAATGGAGACAATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043030XLOC_043030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069044-exon-scaffold_492-1491911889:33748..34216TCONS_00069044-exon-scaffold_492-1491911889:33748..34216Clytia hemisphaericaexon
TCONS_00069044-exon-scaffold_492-1510915933:33748..34216TCONS_00069044-exon-scaffold_492-1510915933:33748..34216Clytia hemisphaericaexon
TCONS_00069044-exon-scaffold_492-1575043694:33748..34216TCONS_00069044-exon-scaffold_492-1575043694:33748..34216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_492supercontigscaffold_492:33748..34216 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.136453	0.741891	0.373246	0	2.91858	1.64882	3.24787	1.82073	1.37262	0.569716	0.138245	1.28955	0.920699	0	2.10951	2.58339	5.63593	2.03444	1.2055	3.08123	3.94543	3.51385	2.02833	2.70255	0.98959	0.211757	3.50756	1.66673	2.81142	5.73232
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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