TCONS_00069042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069042
Unique NameTCONS_00069042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069042 ID=TCONS_00069042|Name=TCONS_00069042|organism=Clytia hemisphaerica|type=transcript|length=843bp
GCACTACTAAAGTTTTCATTGCCATCAAACCGTGTGGAAATTACGTGTCC
CTTTTTGGTTACTGATACAGTCCTGCCAAACTGTATTGTTGGTACCAACC
TCATACGTTGCTTGTATCAACACCAATCAAAGGACAATTTCTTACACGAC
TTAGCTGGTGCAGTAGGGATGATGCTGGAAGGCAAGGCAGTGATCAATGC
CATGGAAGGCGAAGTGATGGAGATGTGTTTTGTGGTAAATCAATCGTGGT
GGAACCGGGAGAATGTCGAAAAGTTCCTTGTTCAGTTCCTGACATCCATA
AAGAAAGGGGAACTCCCATGTTGTTCGAACCCATAACAAGTGAAAATTCT
TTGATTGAGTACGTGGAATGCTTGGTATCCATTAAGAAAGATTTTGAAGT
CCTAGCCATGAACTGCACAGATCGTCCGATTACAATTCATCCAAAGGAAA
TTGTTGGTCGGCTCTGCTCAATTTCTGTTAACTTTCCCAGTGTGAATATG
GTTGATGTTGAAGCGGATAAAGAAAAATGGCAACCTGCAGTAAATCTTGA
ACACCTTGATCAAGAAAAACAAGAGGCAGTGGAAAAGGTACTGTATGAAT
ATTGCGACGTCTTCTCAAAGGAAACATCAGACATAGGGGAGATGAAGGAC
TTCTACATGGACATCCTCACAGACAGTAAACCAATTCATGTTCCCTACAG
ACACATCCCAAAACAAATGTACAAAACCGTGAAAGACTACATGGATGACT
TGATAGCAAATGGCTACCTCTCAAAtgttgatcttctacattcaaggaac
aatattccaatcataaaatccctttgcacaagctgctgcacac
Run BLAST on NCBI

protein sequence of TCONS_00069042-protein

>TCONS_00069042-protein ID=TCONS_00069042-protein|Name=TCONS_00069042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MLFEPITSENSLIEYVECLVSIKKDFEVLAMNCTDRPITIHPKEIVGRLC
SISVNFPSVNMVDVEADKEKWQPAVNLEHLDQEKQEAVEKVLYEYCDVFS
KETSDIGEMKDFYMDILTDSKPIHVPYRHIPKQMYKTVKDYMDDLIANGY
LSNVDLLHSRNNIPIIKSLCTSCCT
Run BLAST on NCBI

transcript from alignment at scaffold_492:28966..29808

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069042 ID=TCONS_00069042|Name=TCONS_00069042|organism=Clytia hemisphaerica|type=transcript|length=843bp|location=Sequence derived from alignment at scaffold_492:28966..29808 (Clytia hemisphaerica)
gtgtgcagcagcttgtgcaaagggattttatgattggaatattgttcctt
gaatgtagaagatcaacaTTTGAGAGGTAGCCATTTGCTATCAAGTCATC
CATGTAGTCTTTCACGGTTTTGTACATTTGTTTTGGGATGTGTCTGTAGG
GAACATGAATTGGTTTACTGTCTGTGAGGATGTCCATGTAGAAGTCCTTC
ATCTCCCCTATGTCTGATGTTTCCTTTGAGAAGACGTCGCAATATTCATA
CAGTACCTTTTCCACTGCCTCTTGTTTTTCTTGATCAAGGTGTTCAAGAT
TTACTGCAGGTTGCCATTTTTCTTTATCCGCTTCAACATCAACCATATTC
ACACTGGGAAAGTTAACAGAAATTGAGCAGAGCCGACCAACAATTTCCTT
TGGATGAATTGTAATCGGACGATCTGTGCAGTTCATGGCTAGGACTTCAA
AATCTTTCTTAATGGATACCAAGCATTCCACGTACTCAATCAAAGAATTT
TCACTTGTTATGGGTTCGAACAACATGGGAGTTCCCCTTTCTTTATGGAT
GTCAGGAACTGAACAAGGAACTTTTCGACATTCTCCCGGTTCCACCACGA
TTGATTTACCACAAAACACATCTCCATCACTTCGCCTTCCATGGCATTGA
TCACTGCCTTGCCTTCCAGCATCATCCCTACTGCACCAGCTAAGTCGTGT
AAGAAATTGTCCTTTGATTGGTGTTGATACAAGCAACGTATGAGGTTGGT
ACCAACAATACAGTTTGGCAGGACTGTATCAGTAACCAAAAAGGGACACG
TAATTTCCACACGGTTTGATGGCAATGAAAACTTTAGTAGTGC

Coding sequence (CDS) from alignment at scaffold_492:28966..29808

>TCONS_00069042 ID=TCONS_00069042|Name=TCONS_00069042|organism=Clytia hemisphaerica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_492:28966..29808 (Clytia hemisphaerica)
tgtgcagcagcttgtgcaaagggattttatgattggaatattgttccttg
aatgtagaagatcaacaTTTGAGAGGTAGCCATTTGCTATCAAGTCATCC
ATGTAGTCTTTCACGGTTTTGTACATTTGTTTTGGGATGTGTCTGTAGGG
AACATGAATTGGTTTACTGTCTGTGAGGATGTCCATGTAGAAGTCCTTCA
TCTCCCCTATGTCTGATGTTTCCTTTGAGAAGACGTCGCAATATTCATAC
AGTACCTTTTCCACTGCCTCTTGTTTTTCTTGATCAAGGTGTTCAAGATT
TACTGCAGGTTGCCATTTTTCTTTATCCGCTTCAACATCAACCATATTCA
CACTGGGAAAGTTAACAGAAATTGAGCAGAGCCGACCAACAATTTCCTTT
GGATGAATTGTAATCGGACGATCTGTGCAGTTCATGGCTAGGACTTCAAA
ATCTTTCTTAATGGATACCAAGCATTCCACGTACTCAATCAAAGAATTTT
CACTTGTTATGGGTTCGAACAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043028XLOC_043028Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069042-proteinTCONS_00069042-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069042-exon-scaffold_492-1491911889:28966..29808TCONS_00069042-exon-scaffold_492-1491911889:28966..29808Clytia hemisphaericaexon
TCONS_00069042-exon-scaffold_492-1510915933:28966..29808TCONS_00069042-exon-scaffold_492-1510915933:28966..29808Clytia hemisphaericaexon
TCONS_00069042-exon-scaffold_492-1575043694:28966..29808TCONS_00069042-exon-scaffold_492-1575043694:28966..29808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_492supercontigscaffold_492:28966..29808 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.49386	2.58478	1.55071	0.668194	5.67567	4.04603	4.87861	6.60946	7.51702	6.10104	8.24061	9.974	5.79695	6.96425	6.6103	4.87692	8.28159	9.31094	4.93977	6.35542	11.6011	9.79684	6.47948	5.50839	6.54216	5.21449	7.23231	4.32492	6.71861	8.12173
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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