TCONS_00069040 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069040
Unique NameTCONS_00069040
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069040 ID=TCONS_00069040|Name=TCONS_00069040|organism=Clytia hemisphaerica|type=transcript|length=396bp
CTTATGTCTTAGATGATCGGAATTACGAACGAACTGTAGGAGATGAGCAC
TGTCTTAAGGACATACTACTCCAAGTTATGTAAATAATATAACTTGTCAG
TCCGAGTCGACCCAGTTGAAGTTACTTTCCTTAAACAAATTGAAGGATTT
CTTGATCAACTAGGATTTCCAAACAGAGTAACTAAGGGACGCAGAAAAGG
GAGATTCAATCGAACACTATGAATTGCACAGAACTAGTTAGAAATAAAAG
TTCAAACGTTCAAACaggaaattgagaaattttgagTGCTAAATATGAAT
AATATTCTGAATTTAAGTATACTTCCAGAAGGATCGGGACCACCCTAAGG
GTGATCCCTAATAAAATATAGATAAACACTTACATGTTTAAGATGC
Run BLAST on NCBI

transcript from alignment at scaffold_492:19752..20147

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069040 ID=TCONS_00069040|Name=TCONS_00069040|organism=Clytia hemisphaerica|type=transcript|length=396bp|location=Sequence derived from alignment at scaffold_492:19752..20147 (Clytia hemisphaerica)
GCATCTTAAACATGTAAGTGTTTATCTATATTTTATTAGGGATCACCCTT
AGGGTGGTCCCGATCCTTCTGGAAGTATACTTAAATTCAGAATATTATTC
ATATTTAGCActcaaaatttctcaatttcctGTTTGAACGTTTGAACTTT
TATTTCTAACTAGTTCTGTGCAATTCATAGTGTTCGATTGAATCTCCCTT
TTCTGCGTCCCTTAGTTACTCTGTTTGGAAATCCTAGTTGATCAAGAAAT
CCTTCAATTTGTTTAAGGAAAGTAACTTCAACTGGGTCGACTCGGACTGA
CAAGTTATATTATTTACATAACTTGGAGTAGTATGTCCTTAAGACAGTGC
TCATCTCCTACAGTTCGTTCGTAATTCCGATCATCTAAGACATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043026XLOC_043026Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069040-exon-scaffold_492-1491911889:19752..20147TCONS_00069040-exon-scaffold_492-1491911889:19752..20147Clytia hemisphaericaexon
TCONS_00069040-exon-scaffold_492-1510915933:19752..20147TCONS_00069040-exon-scaffold_492-1510915933:19752..20147Clytia hemisphaericaexon
TCONS_00069040-exon-scaffold_492-1575043694:19752..20147TCONS_00069040-exon-scaffold_492-1575043694:19752..20147Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_492supercontigscaffold_492:19752..20147 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.370015	0.859245	1.26096	0.767546	0.40435	0	0.456702	0.479622	0.594089	0	0	0.378532	0.131036	0	0	0.284845	0.729892	0	0.211041	1.1006	1.87891	0	0	0	0.363585	0.780434	0	0.8423	0.429085
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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