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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069030 ID=TCONS_00069030|Name=TCONS_00069030|organism=Clytia hemisphaerica|type=transcript|length=910bp
CGGTAATTTCGCCCGTGGTTCTCAAATTCCTTTGATGAACtttgttcttt
cttttcatcATGGTTTTCTCTGGACAGCAGTCCCTTTAGCTGACAAAgtt
caactttcaaaacagcAACTTCATCATACATCTGGTTGGCCTTTTTCTGC
TTCGTTTCCACAAGcCCCCAACGCAGAGAACAAAGAATTGGCATCCTGTT
TCCGGAAGTGTGATCGAAGTACAACATAAAGATCATTAATCCTCATTGTT
GGTCGAGATTCAAGTGAACTTGATGTCCAGTGCTATGGCGATGGACCACA
ATGTCTCCACATCTGCCTCAGCCACACCTCTCAAGACTTCATATACGACG
GATTCCATGATGTTTGCCCCGGATTGCACTGATACCACCAGATAATGCCC
AATAAGCAGAGATCAGCATGGGTATGTTGTTGACGCCATCCGTGCTGTTT
TACATGACTGTACCAAATGTACCAAACCGCCCTCTGCCATCAAATGTAGT
AACCCGAAAGCTACTGAAAACGTTTGGTGGATGGTACTGGGCAGAAGAAA
TTGAGAACACAAGTCATTTAAAAAATGACATAAACTAAATATACTTTCTG
CTCTAACAATGGTACAGCATGTATGGTCTTCAACCAGAACTCTGTGATAT
CCACATGCTCTTATTGAGCCTGGTCAGAAAGGTCAAACTCGTTACCAGGC
CCCAAAGAGCATGGGCATCAAAGACAAAACACAGAACACTCAACAAAGGG
GCATATGGTGACTCTAACTCATAGACACTGATCTGTTCTGCAAAATACTC
GTGAGTCACCATGAAGGGATGTCAAATGTAAACAAACATTTTAATATATA
AAATGATAGCCTAGCTATATAATATTTATACAATAGAAGAACTATGATAC
AAGAAGATat Run BLAST on NCBI transcript from alignment at scaffold_492:30657..32439+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069030 ID=TCONS_00069030|Name=TCONS_00069030|organism=Clytia hemisphaerica|type=transcript|length=1783bp|location=Sequence derived from alignment at scaffold_492:30657..32439+ (Clytia hemisphaerica)
CGGTAATTTCGCCCGTGGTTCTCAAATTCCTTTGATGAACtttgttcttt
cttttcatcATGGTTTTCTCTGGACAGCAGTCCCTTTAGCTGACAAAgtt
caactttcaaaacagcAACTTCATCATACATCTGGTTGGCCTTTTTCTGC
TTCGTTTCCACAAGGTTAGTCGTCACATCTCTTGAAGGTTTAAACTTTTG
ATTGTGGTTAGTTTCATTTGTCACAATATATGTCAGGCTGTATAACAAGT
CTTCATCTGTAACCACCGGATTTTTAAGTGTTTCCCTTAACTGCATCCGA
ATACTTTCGTTTCGCAGACCAGATATTACAGAAGTCTTGAACTTTCTATC
AATGATTTGCTCTTCAAAGGGACAAGGGTCTGTGTGTGACACAGACTTGA
CTTTTTGTCGCATGGCCATCAGTCTCATAACAAATTCGTAAGCAGATTCC
CctactttttgtttttcagcCCCCAACGCAGAGAACAAAGAATTGGCATC
CTGTTTCCGGAAGTGTGATCGAAGTACAACATAAAGATCATTAATCCTCA
TTGTTGGTCGAGATTCAAGGTACGACCTCAAATAATTATCCGGTGTTGCA
GATTTGATTACAGCATTAATTATCCCTTCTTAATGGCACTTTCAATTTGG
TACAACAAACTGCTGTATGATATACAGTCTTTCTCCCCATAACGTCCCAG
CTTCCCAATGATTTTGAATTCTCGCATAAACACTTTTCTCATCTCTTCAA
ACTCATCAGACCTGGCAGAATTCCCGGTGTCATTCCCAAGCCTCGAACGC
CCAGGCGTAAAGCGATTAAGGGATCTTCGTGGTGCTGGCTCAAAAGGGTT
TGTGTTGTTCACGTTGGGTCCGTTTAAGGGGTCCAATACTTTAGTTTGGG
TAGCCATGGAGGACTGTCGTGGCTTGGACGAAAATATAGGTGTTGCAAAG
GGGTCAATCGATTCAAATGGGTCCTCGAAATCTTCAACTGGGATGTCAGC
CAGTGGGTCAGGTCTCCCCTTCAGGATCTTTTTGGCTCGTAGAAACTCTG
CCTCCCCCCATCCTGTTGACTTTCCAAAACTTCAGAGTTCAAATATCGTA
AAACAAAACGTCGTAATTCTTATTCCTTCCCTTTCAGTGAACTTGATGTC
CAGTGCTATGGCGATGGACCACAATGTCTCCACATCTGCCTCAGCCACAC
CTCTCAAGACTTCATATACGACGGATTCCATGATGTTTGCCCCGGATTGC
ACTGATACCACCAGATAATGCCCAATAAGCAGAGATCAGCATGGGTATGT
TGTTGACGCCATCCGTGCTGTTTTACATGACTGTACCAAATGTACCAAAC
CGCCCTCTGCCATCAAATGTAGTAACCCGAAAGCTACTGAAAACGTTTGG
TGGATGGTACTGGGCAGAAGAAATTGAGAACACAAGTCATTTAAAAAATG
ACATAAACTAAATATACTTTCTGCTCTAACAATGGTACAGCATGTATGGT
CTTCAACCAGAACTCTGTGATATCCACATGCTCTTATTGAGCCTGGTCAG
AAAGGTCAAACTCGTTACCAGGCCCCAAAGAGCATGGGCATCAAAGACAA
AACACAGAACACTCAACAAAGGGGCATATGGTGACTCTAACTCATAGACA
CTGATCTGTTCTGCAAAATACTCGTGAGTCACCATGAAGGGATGTCAAAT
GTAAACAAACATTTTAATATATAAAATGATAGCCTAGCTATATAATATTT
ATACAATAGAAGAACTATGATACAAGAAGATat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069030-exon-scaffold_492-1491911889:30657..30820 | TCONS_00069030-exon-scaffold_492-1491911889:30657..30820 | Clytia hemisphaerica | exon |
| TCONS_00069030-exon-scaffold_492-1510915933:30657..30820 | TCONS_00069030-exon-scaffold_492-1510915933:30657..30820 | Clytia hemisphaerica | exon |
| TCONS_00069030-exon-scaffold_492-1575043694:30657..30820 | TCONS_00069030-exon-scaffold_492-1575043694:30657..30820 | Clytia hemisphaerica | exon |
| TCONS_00069030-exon-scaffold_492-1491911889:31126..31225 | TCONS_00069030-exon-scaffold_492-1491911889:31126..31225 | Clytia hemisphaerica | exon |
| TCONS_00069030-exon-scaffold_492-1510915933:31126..31225 | TCONS_00069030-exon-scaffold_492-1510915933:31126..31225 | Clytia hemisphaerica | exon |
| TCONS_00069030-exon-scaffold_492-1575043694:31126..31225 | TCONS_00069030-exon-scaffold_492-1575043694:31126..31225 | Clytia hemisphaerica | exon |
| TCONS_00069030-exon-scaffold_492-1491911889:31794..32439 | TCONS_00069030-exon-scaffold_492-1491911889:31794..32439 | Clytia hemisphaerica | exon |
| TCONS_00069030-exon-scaffold_492-1510915933:31794..32439 | TCONS_00069030-exon-scaffold_492-1510915933:31794..32439 | Clytia hemisphaerica | exon |
| TCONS_00069030-exon-scaffold_492-1575043694:31794..32439 | TCONS_00069030-exon-scaffold_492-1575043694:31794..32439 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_492 | supercontig | scaffold_492:30657..32439 + |
Blast
The following BLAST results are available for this feature:
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