TCONS_00069030 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069030
Unique NameTCONS_00069030
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length910

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069030 ID=TCONS_00069030|Name=TCONS_00069030|organism=Clytia hemisphaerica|type=transcript|length=910bp
CGGTAATTTCGCCCGTGGTTCTCAAATTCCTTTGATGAACtttgttcttt
cttttcatcATGGTTTTCTCTGGACAGCAGTCCCTTTAGCTGACAAAgtt
caactttcaaaacagcAACTTCATCATACATCTGGTTGGCCTTTTTCTGC
TTCGTTTCCACAAGcCCCCAACGCAGAGAACAAAGAATTGGCATCCTGTT
TCCGGAAGTGTGATCGAAGTACAACATAAAGATCATTAATCCTCATTGTT
GGTCGAGATTCAAGTGAACTTGATGTCCAGTGCTATGGCGATGGACCACA
ATGTCTCCACATCTGCCTCAGCCACACCTCTCAAGACTTCATATACGACG
GATTCCATGATGTTTGCCCCGGATTGCACTGATACCACCAGATAATGCCC
AATAAGCAGAGATCAGCATGGGTATGTTGTTGACGCCATCCGTGCTGTTT
TACATGACTGTACCAAATGTACCAAACCGCCCTCTGCCATCAAATGTAGT
AACCCGAAAGCTACTGAAAACGTTTGGTGGATGGTACTGGGCAGAAGAAA
TTGAGAACACAAGTCATTTAAAAAATGACATAAACTAAATATACTTTCTG
CTCTAACAATGGTACAGCATGTATGGTCTTCAACCAGAACTCTGTGATAT
CCACATGCTCTTATTGAGCCTGGTCAGAAAGGTCAAACTCGTTACCAGGC
CCCAAAGAGCATGGGCATCAAAGACAAAACACAGAACACTCAACAAAGGG
GCATATGGTGACTCTAACTCATAGACACTGATCTGTTCTGCAAAATACTC
GTGAGTCACCATGAAGGGATGTCAAATGTAAACAAACATTTTAATATATA
AAATGATAGCCTAGCTATATAATATTTATACAATAGAAGAACTATGATAC
AAGAAGATat
Run BLAST on NCBI

transcript from alignment at scaffold_492:30657..32439+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069030 ID=TCONS_00069030|Name=TCONS_00069030|organism=Clytia hemisphaerica|type=transcript|length=1783bp|location=Sequence derived from alignment at scaffold_492:30657..32439+ (Clytia hemisphaerica)
CGGTAATTTCGCCCGTGGTTCTCAAATTCCTTTGATGAACtttgttcttt
cttttcatcATGGTTTTCTCTGGACAGCAGTCCCTTTAGCTGACAAAgtt
caactttcaaaacagcAACTTCATCATACATCTGGTTGGCCTTTTTCTGC
TTCGTTTCCACAAGGTTAGTCGTCACATCTCTTGAAGGTTTAAACTTTTG
ATTGTGGTTAGTTTCATTTGTCACAATATATGTCAGGCTGTATAACAAGT
CTTCATCTGTAACCACCGGATTTTTAAGTGTTTCCCTTAACTGCATCCGA
ATACTTTCGTTTCGCAGACCAGATATTACAGAAGTCTTGAACTTTCTATC
AATGATTTGCTCTTCAAAGGGACAAGGGTCTGTGTGTGACACAGACTTGA
CTTTTTGTCGCATGGCCATCAGTCTCATAACAAATTCGTAAGCAGATTCC
CctactttttgtttttcagcCCCCAACGCAGAGAACAAAGAATTGGCATC
CTGTTTCCGGAAGTGTGATCGAAGTACAACATAAAGATCATTAATCCTCA
TTGTTGGTCGAGATTCAAGGTACGACCTCAAATAATTATCCGGTGTTGCA
GATTTGATTACAGCATTAATTATCCCTTCTTAATGGCACTTTCAATTTGG
TACAACAAACTGCTGTATGATATACAGTCTTTCTCCCCATAACGTCCCAG
CTTCCCAATGATTTTGAATTCTCGCATAAACACTTTTCTCATCTCTTCAA
ACTCATCAGACCTGGCAGAATTCCCGGTGTCATTCCCAAGCCTCGAACGC
CCAGGCGTAAAGCGATTAAGGGATCTTCGTGGTGCTGGCTCAAAAGGGTT
TGTGTTGTTCACGTTGGGTCCGTTTAAGGGGTCCAATACTTTAGTTTGGG
TAGCCATGGAGGACTGTCGTGGCTTGGACGAAAATATAGGTGTTGCAAAG
GGGTCAATCGATTCAAATGGGTCCTCGAAATCTTCAACTGGGATGTCAGC
CAGTGGGTCAGGTCTCCCCTTCAGGATCTTTTTGGCTCGTAGAAACTCTG
CCTCCCCCCATCCTGTTGACTTTCCAAAACTTCAGAGTTCAAATATCGTA
AAACAAAACGTCGTAATTCTTATTCCTTCCCTTTCAGTGAACTTGATGTC
CAGTGCTATGGCGATGGACCACAATGTCTCCACATCTGCCTCAGCCACAC
CTCTCAAGACTTCATATACGACGGATTCCATGATGTTTGCCCCGGATTGC
ACTGATACCACCAGATAATGCCCAATAAGCAGAGATCAGCATGGGTATGT
TGTTGACGCCATCCGTGCTGTTTTACATGACTGTACCAAATGTACCAAAC
CGCCCTCTGCCATCAAATGTAGTAACCCGAAAGCTACTGAAAACGTTTGG
TGGATGGTACTGGGCAGAAGAAATTGAGAACACAAGTCATTTAAAAAATG
ACATAAACTAAATATACTTTCTGCTCTAACAATGGTACAGCATGTATGGT
CTTCAACCAGAACTCTGTGATATCCACATGCTCTTATTGAGCCTGGTCAG
AAAGGTCAAACTCGTTACCAGGCCCCAAAGAGCATGGGCATCAAAGACAA
AACACAGAACACTCAACAAAGGGGCATATGGTGACTCTAACTCATAGACA
CTGATCTGTTCTGCAAAATACTCGTGAGTCACCATGAAGGGATGTCAAAT
GTAAACAAACATTTTAATATATAAAATGATAGCCTAGCTATATAATATTT
ATACAATAGAAGAACTATGATACAAGAAGATat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043018XLOC_043018Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069030-exon-scaffold_492-1491911889:30657..30820TCONS_00069030-exon-scaffold_492-1491911889:30657..30820Clytia hemisphaericaexon
TCONS_00069030-exon-scaffold_492-1510915933:30657..30820TCONS_00069030-exon-scaffold_492-1510915933:30657..30820Clytia hemisphaericaexon
TCONS_00069030-exon-scaffold_492-1575043694:30657..30820TCONS_00069030-exon-scaffold_492-1575043694:30657..30820Clytia hemisphaericaexon
TCONS_00069030-exon-scaffold_492-1491911889:31126..31225TCONS_00069030-exon-scaffold_492-1491911889:31126..31225Clytia hemisphaericaexon
TCONS_00069030-exon-scaffold_492-1510915933:31126..31225TCONS_00069030-exon-scaffold_492-1510915933:31126..31225Clytia hemisphaericaexon
TCONS_00069030-exon-scaffold_492-1575043694:31126..31225TCONS_00069030-exon-scaffold_492-1575043694:31126..31225Clytia hemisphaericaexon
TCONS_00069030-exon-scaffold_492-1491911889:31794..32439TCONS_00069030-exon-scaffold_492-1491911889:31794..32439Clytia hemisphaericaexon
TCONS_00069030-exon-scaffold_492-1510915933:31794..32439TCONS_00069030-exon-scaffold_492-1510915933:31794..32439Clytia hemisphaericaexon
TCONS_00069030-exon-scaffold_492-1575043694:31794..32439TCONS_00069030-exon-scaffold_492-1575043694:31794..32439Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_492supercontigscaffold_492:30657..32439 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68724	1.97411	1.09571	1.57673	8.80351	6.39493	3.50348	4.94066	10.2187	17.0408	27.8477	15.0235	15.5663	17.2763	12.444	17.219	14.5134	14.103	32.2929	32.9403	24.187	24.0107	16.6694	16.8883	1.54416	1.63501	50.8865	39.1055	30.9706	27.2434
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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