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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068989 ID=TCONS_00068989|Name=TCONS_00068989|organism=Clytia hemisphaerica|type=transcript|length=1177bp
TCTcatctttaattttattttcaaagaacaaatacaaattataaaacata
aacaaaaaatcgATGAGAAAATGGGCTGCTGCTGTTCCAAGACGTGTGGA
GATAACTGCTGCGTGGAATGTACTCAAAAATGTGCAGTCGGTAGTTACCT
GTGGAGAGGGAGAGCTCGAAATGTTATCGCTGTCGTCACGTCGAGCAGGA
AAGTCGAGAAACGGGGTAGCGGATGGGTTATTCTAACCAATGACGGGCAC
TTGTTTTATTACTTGGACGCGGACGGCGCTACGGAATGGTACGGCGCAAA
TGTTTACCTTGAGTTCGGTTCCACAATGTCGTACGTTTTCGATGTGCCAC
TAGGCCTGGTAACTAAGGTTGGGTACGAGAAAATGATTGGTGATGACCGT
GTGACGTCACAATCTTGGTTTCATGATTCGAAAGCAGTAGAGGGCGGTGA
AAGTTATTTAGCGTTAAACATGACTTTCACTAACGGCGCTGAGTTGGTTT
TGTACATTTGTATGCAAGaacgatggccgagtggtcatTTCTCAACCTGG
AACCCAGTCCTTTAAgtcgtttttttttgtgattttgatagCGCTTGAAA
AGGTTTCTATCATGTCCACCAGTAAAGACTAAGAGTGGTGCAAGTGGCTC
TTGGTATGACTGTAGTCATTGCCCCAAACTAGGGGTTCACAGTTCGAATC
CCCGTACCATCCAATGgcccgttcagttcatagatagcagAATCGGCTGG
CCATGGaaccgtgaaaacaatcgaaagactgttcAAAAACTCCTTAATTa
gtgggctatccacgtaagaTATCGACTCTATTTTTACAGACAAAAATGTC
TGCACGATGTCTTCATATCTATCTTCTAAGCACAAACCAAGCTAAAAATT
GACTTCCCCCCTcattttgtcggattttttaaacatcaattgtttcaatt
ttttggtatttttttatcttttattccTTATCTTCTAGTAGAATTTAAAT
TGTATTGTGTCtttgtatttaaattttttcatcgaatttggcacgtaaaa
attatttctttataGTAAAGTGTTCTTTCTACCTACGAGCCTCTGCATTT
TAATGTAATATTTACTCTTAGGCAAAGACAAGGGGCAGGGTTTTGTTTTA
AATAGCAATGGGCTTGTAATGTCTTTC Run BLAST on NCBI transcript from alignment at scaffold_491:164318..165990- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068989 ID=TCONS_00068989|Name=TCONS_00068989|organism=Clytia hemisphaerica|type=transcript|length=1673bp|location=Sequence derived from alignment at scaffold_491:164318..165990- (Clytia hemisphaerica)
TCTCATCTTTAATTTTATTTTCAAAGAACAAATACAAATTATAAAACATA
AACAAAAAATCGATGAGAAAATGGGCTGCTGCTGTTCCAAGACGTGTGGA
GATAACTGCTGCGTGGAATGTACTCAAAAATGTGCAGTCGGTAGTTACCT
GTGGAGAGGGAGAGCTCGAAATGTTATCGCTGTCGTCACGTCGAGCAGGA
AAGTCGAGAAACGGGGTAGCGGATGGGTTATTCTAACCAATGACGGGCAC
TTGTTTTATTACTTGGACGCGGACGGCGCTACGGAATGGTACGGCGCAAA
TGTTTACCTTGAGTTCGGTTCCACAATGTCGTACGTTTTCGATGTGCCAC
TAGGCCTGGTAACTAAGGTTGGGTACGAGAAAATGATTGGTGATGACCGT
GTGACGTCACAATCTTGGTTTCATGATTCGAAAGCAGTAGAGGGCGGTGA
AAGTTATTTAGCGTTAAACATGACTTTCACTAACGGCGCTGAGTTGGTTT
TGTACATTTGTATGCAAGGTGCGTACGATTTATTGAATCTCATCCAGGAA
ATTCTGAGACATCAATCTAGCACGTCTCTTCCCAAAGATTTCAAAATTAG
TTATGTGGATTATAACATAAATAGGAGTGTTTGCGTTCCAGCGCAAACTT
TACAAGCACCAATTCTGTTTGGCTTCACTAATACCAATCGTCGTGGAATG
CCAACGAGTCGGCCAATCGTTTAAACGGTCGTGGCTTCTTCGTACGGGTG
ACAGTAGATCTTGTATTTTTCTATCTTTGATCTGGAGTTTTCTGGAGTTT
TCTGAACCTTTAGAATGTTTCTAAGTTGGACTTTTAGAGTTCAATAACAA
AAAACTACTTCTACTTTCACCCGTACGAAGGAGTCAGCACCCGTTTAAAC
GGCGACTTTATTATGGAACCTTAGAGGTTAGATTATGGTCGTGAGTTTTT
TCTTTATATTTTAAATGAACCTGTAACTATGAATTATTGTGCTTGTAATT
ATTATTATTTATAGAACGATGGCCGAGTGGTCATTTCTCAACCTGGAACC
CAGTCCTTTAAGTCGTTTTTTTTTGTGATTTTGATAGCGCTTGAAAAGGT
TTCTATCATGTCCACCAGTAAAGACTAAGAGTGGTGCAAGTGGCTCTTGG
TATGACTGTAGTCATTGCCCCAAACTAGGGGTTCACAGTTCGAATCCCCG
TACCATCCAATGGCCCGTTCAGTTCATAGATAGCAGAATCGGCTGGCCAT
GGAACCGTGAAAACAATCGAAAGACTGTTCAAAAACTCCTTAATTAGTGG
GCTATCCACGTAAGATATCGACTCTATTTTTACAGACAAAAATGTCTGCA
CGATGTCTTCATATCTATCTTCTAAGCACAAACCAAGCTAAAAATTGACT
TCCCCCCTCATTTTGTCGGATTTTTTAAACATCAATTGTTTCAATTTTTT
GGTATTTTTTTATCTTTTATTCCTTATCTTCTAGTAGAATTTAAATTGTA
TTGTGTCTTTGTATTTAAATTTTTTCATCGAATTTGGCACGTAAAAATTA
TTTCTTTATAGTAAAGTGTTCTTTCTACCTACGAGCCTCTGCATTTTAAT
GTAATATTTACTCTTAGGCAAAGACAAGGGGCAGGGTTTTGTTTTAAATA
GCAATGGGCTTGTAATGTCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068989-exon-scaffold_491-1575043694:165473..165990 | TCONS_00068989-exon-scaffold_491-1575043694:165473..165990 | Clytia hemisphaerica | exon |
| TCONS_00068989-exon-scaffold_491-1575043694:164318..164976 | TCONS_00068989-exon-scaffold_491-1575043694:164318..164976 | Clytia hemisphaerica | exon |
| TCONS_00068989-exon-scaffold_491-1510915933:165473..165990 | TCONS_00068989-exon-scaffold_491-1510915933:165473..165990 | Clytia hemisphaerica | exon |
| TCONS_00068989-exon-scaffold_491-1510915933:164318..164976 | TCONS_00068989-exon-scaffold_491-1510915933:164318..164976 | Clytia hemisphaerica | exon |
| TCONS_00068989-exon-scaffold_491-1491911889:165473..165990 | TCONS_00068989-exon-scaffold_491-1491911889:165473..165990 | Clytia hemisphaerica | exon |
| TCONS_00068989-exon-scaffold_491-1491911889:164318..164976 | TCONS_00068989-exon-scaffold_491-1491911889:164318..164976 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_491 | supercontig | scaffold_491:164318..165990 - |
Blast
The following BLAST results are available for this feature:
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