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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068964 ID=TCONS_00068964|Name=TCONS_00068964|organism=Clytia hemisphaerica|type=transcript|length=1728bpRun BLAST on NCBI transcript from alignment at scaffold_491:61775..97267+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068964 ID=TCONS_00068964|Name=TCONS_00068964|organism=Clytia hemisphaerica|type=transcript|length=35493bp|location=Sequence derived from alignment at scaffold_491:61775..97267+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00068964 vs. Swiss-Prot (Human)
Match: MED4 (Mediator of RNA polymerase II transcription subunit 4 OS=Homo sapiens GN=MED4 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 5.038e-29 Identity = 65/169 (38.46%), Postives = 108/169 (63.91%), Query Frame = 2
Query: 128 STENIISGQLDDFANLTKEFFDNLTKVYSQRGRPPTNTEALNKIGEDLAYKGNDLKKSLQTAIEQINVCKDIDXXXXXXXXXXXXXLQTHSQLKEAEKILAVAVFQAKKKLEAGKQAKSASVSCEDLIKFAFRISSGNSVEAPQDWKPGDPRRPYPLDIEMRSGTLGQL 634
ST + L+D L++E + L +Q+ N++ E L ++ + ++ ++ A+ Q + ++ +++E+ K + +I Q QLKEAE+ILA AV+QAK+KL++ ++A+ ++S E++IK+A RIS+ N+V AP W PGDPRRPYP D+EMRSG LGQ+
Sbjct: 25 STRERLLSALEDLEVLSRELIEMLAISRNQKL---LQAGEENQVLELLIHRDGEFQELMKLALNQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQM 190 The following BLAST results are available for this feature:
BLAST of TCONS_00068964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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