TCONS_00068947 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00068947
Unique Name	TCONS_00068947
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	341

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_490:71001..73602+
coding sequence from alignment at scaffold_490:71001..73602+

transcript sequence

>TCONS_00068947 ID=TCONS_00068947|Name=TCONS_00068947|organism=Clytia hemisphaerica|type=transcript|length=341bp
gcaaaattgatttttcagtAATGGGCTTGCGGAGATGGTTGATGCTGATG
ATGCGACAAGTTCTGAGTCTCAAAATCAGGGATCGCCAATGCTCCTCAAC
ACAGATGAAGTGTccaatgaaagttttttttatctaaatgaCTTTAGGAA
TGAAAATAATCGTGGAGAAGAAGCTGAATTACTGCCAAACaaaattttga
gAAATAAAGATATGCCAAGTAACGATGATGTTATTGAAATTATTGGTCTA
TCAACAAATAAACAGAATTTAGACGAACTTCCTGTAATTGATGGATCAAA
TGAACAAAACATTGAAGATGAAGTTTACAACCACATTGATG

Run BLAST on NCBI

protein sequence of TCONS_00068947-protein

>TCONS_00068947-protein ID=TCONS_00068947-protein|Name=TCONS_00068947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MVDADDATSSESQNQGSPMLLNTDEVSNESFFYLNDFRNENNRGEEAELL
PNKILRNKDMPSNDDVIEIIGLSTNKQNLDELPVIDGSNEQNIEDEVYNH
ID

Run BLAST on NCBI

transcript from alignment at scaffold_490:71001..73602+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00068947 ID=TCONS_00068947|Name=TCONS_00068947|organism=Clytia hemisphaerica|type=transcript|length=2602bp|location=Sequence derived from alignment at scaffold_490:71001..73602+ (Clytia hemisphaerica)
gcaaaattgatttttcagtAATGGGCTTGCGGAGATGGTTGATGCTGATG
ATGCGACAAGTTCTGAGTCTCAAAATCAGGGGTAAGGTGATTATTCTTCA
TAGGACAGCAAAAAAACCATTGTgacaaaaatatgtttttgtaGTTGAGA
ATCAGAATCCATTCTGTGAGGCTTTCCGCAAACCTTTACATAGTAGGCAC
TCCCCctttaaaaagggggggtttgagaattttactgaatttaagaGAAG
GGGGgggcttgtgaaaatttcaaataaaagagggtggcttggacaaaaag
aggggggttaattttttaaggggggcttggaagatttggcaatttgcaaa
agagtgttttccattcatttttaaatttctaaacaattattatatttcca
ttcatttgaatgaaacaaaaactcTGTTTGAGCGTAAAAGGTCGAAAAAA
AGAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATTATTATAT
TTCCATTCAtttgaatgaaacaaaaactcTGTTTGAGCGTAAAAGGtcga
aaaaaagaggggggttgaataaaaagaggggggttgaggaattttcattt
ttaagagggGGGGTTGAGCTAAAAGAGGGGGGTGCCATTTTTAAGGGGGG
CTTGATACCCCTCTGACCACTATGCCTTTATTTCAGAACGCTNTAAGGGG
GGGCTTGATACCCCTCTGACCACTATGCCTTTATTTCAGAACGCCCCAGC
AGAATTTTTTAATGATAAAATGTCATATGATATGACTGTTACCTAGGTAC
AAGATAATAAATTTATCCTATTTGTACTGAAAAACTCCCAGACTATACAA
CGATTTTACCAATTATTTCTTCAGATCGCCAATGCTCCTCAACACAGATG
AAGTGTccaatgaaagttttttttatctaaatgaCTTTAGGTAAGGCAGG
cctatttgaaatgaatttgtaAAAGAGTTTTCTGGCcacttacacgcttt
ttttataagaagccttcagattttcttaacttttaagtttaagcctaaaa
atgttcttaacatgttcttattttcaccattttgagagtattttttgccc
attttcctaagaatttGGGTTTTCTAGGCCTGCAAAGACTTATTatcttg
ttcttaagattttaggatagaagccttgtgttcttatatagtttgttctt
attaaaaaaaacttgtactaGACTATACAGAAAGGATTTCTTGAAAGGTC
CAATGTGTCAATTAGATAATATAGATGACACCCCTTCacagcggaccttc
aattcaaaCATTCacacatttttaaaaaacttttcatgcatttcacgcaa
gtgaaaaagcccactTTTGCATTCATGCAAACTGTTGGGAGAGCCCCATA
GATATGTAAAATgacttctttttatttcaatctcagGAATGAAAATAATC
GTGGAGAAGAAGCTGAATTACTGCCAAACaaaattttgaggtatttttaa
attaaaattacaTCCAAGAACAACAGCTTTGTTGCTATAGAGATATCACA
TGGTGGTTGcaggtagaatttttttttgaaaagtagctAAAGAAGGTACA
GAAAACTATATGCCTTTCACAAAGAAAATTAGATGTACCTGGATTATGTA
TTGTAATTTTAGAGTGAAAACAATTCTTTAAATTCCAGAAATAAAGATAT
GCCAAGTAACGATGATGTTATTGAAATTATTGGTCTATCAACAAATAAAC
AGTAAGTCTTCGTTTTATTTAAACAAACCATTCAAAAACGCATCTGGTCT
ATCATTCCAGCGTGACAGACACAACATATGAAATTCATCTAGTATAATAA
GATATAATACATAATTTTTAGGGAAATGAAAGAATTTAgctgcaaaaaaa
caaaaatgtacataGTGTCCCCCTGATTAATTGATTTGGATCAGAATCAA
GTGTATTGAGAGTaaagttatatttttatattatttttgtatatatattT
CTAATTTTCAGGAATTTAGACGAACTTCCTGTAATTGATGGATCAAATGA
ACAGTATGTACACTTAGTAAAGATAAAGAATAGggggaaatgaatttttt
tatttttcagacaaGCTAGACAAGTTTAGGGGATGACTTTGTAGATTCCA
AGTATTTTTGGGAAAGTAGCCTTTTGCTTACTTTCAGACTCGCAAATTAA
TAGAAAATTTCCAATTACCCTTAAGTGCAAAATAACCCCCCTgggcttgt
taatttttcgaaagccttccaaccccccggacctaaTTAGGAACCCGCGT
TTATTAGATTCTAAGAAAATTCTAAGAGAGGCCCTCAGTTTGCTCTAAAA
atcctgattttagcctatatttacctttttttaggttttcaaaAGTACAA
TTTCCTACCCCTCCCCCAGAATCAGGTccccctgtttatttggcacctaa
gagtaaaaaCGGGAAAAGGGGAATggaaattttctattttattcatGGGG
GAACACCTGAAGGGCACTATTTCTCCTATATAAACTATTGGCTTAATTTC
AAATCATAATTATTTAGAAACATTGAAGATGAAGTTTACAACCACATTGA
TG

Coding sequence (CDS) from alignment at scaffold_490:71001..73602+

>TCONS_00068947 ID=TCONS_00068947|Name=TCONS_00068947|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_490:71001..73602+ (Clytia hemisphaerica)
ATGGTTGATGCTGATGATGCGACAAGTTCTGAGTCTCAAAATCAGGGATC
GCCAATGCTCCTCAACACAGATGAAGTGTccaatgaaagttttttttatc
taaatgaCTTTAGGAATGAAAATAATCGTGGAGAAGAAGCTGAATTACTG
CCAAACaaaattttgagAAATAAAGATATGCCAAGTAACGATGATGTTAT
TGAAATTATTGGTCTATCAACAAATAAACAGAATTTAGACGAACTTCCTG
TAATTGATGGATCAAATGAACAAAACATTGAAGATGAAGTTTACAACCAC
ATTGATATGGTTGATGCTGATGATGCGACAAGTTCTGAGTCTCAAAATCA
GGGATCGCCAATGCTCCTCAACACAGATGAAGTGTccaatgaaagttttt
tttatctaaatgaCTTTAGGAATGAAAATAATCGTGGAGAAGAAGCTGAA
TTACTGCCAAACaaaattttgagAAATAAAGATATGCCAAGTAACGATGA
TGTTATTGAAATTATTGGTCTATCAACAAATAAACAGAATTTAGACGAAC
TTCCTGTAATTGATGGATCAAATGAACAAAACATTGAAGATGAAGTTTAC
AACCACATTGATATGGTTGATGCTGATGATGCGACAAGTTCTGAGTCTCA
AAATCAGGGATCGCCAATGCTCCTCAACACAGATGAAGTGTccaatgaaa
gttttttttatctaaatgaCTTTAGGAATGAAAATAATCGTGGAGAAGAA
GCTGAATTACTGCCAAACaaaattttgagAAATAAAGATATGCCAAGTAA
CGATGATGTTATTGAAATTATTGGTCTATCAACAAATAAACAGAATTTAG
ACGAACTTCCTGTAATTGATGGATCAAATGAACAAAACATTGAAGATGAA
GTTTACAACCACATTGATATGGTTGATGCTGATGATGCGACAAGTTCTGA
GTCTCAAAATCAGGGATCGCCAATGCTCCTCAACACAGATGAAGTGTcca
atgaaagttttttttatctaaatgaCTTTAGGAATGAAAATAATCGTGGA
GAAGAAGCTGAATTACTGCCAAACaaaattttgagAAATAAAGATATGCC
AAGTAACGATGATGTTATTGAAATTATTGGTCTATCAACAAATAAACAGA
ATTTAGACGAACTTCCTGTAATTGATGGATCAAATGAACAAAACATTGAA
GATGAAGTTTACAACCACATTGATATGGTTGATGCTGATGATGCGACAAG
TTCTGAGTCTCAAAATCAGGGATCGCCAATGCTCCTCAACACAGATGAAG
TGTccaatgaaagttttttttatctaaatgaCTTTAGGAATGAAAATAAT
CGTGGAGAAGAAGCTGAATTACTGCCAAACaaaattttgagAAATAAAGA
TATGCCAAGTAACGATGATGTTATTGAAATTATTGGTCTATCAACAAATA
AACAGAATTTAGACGAACTTCCTGTAATTGATGGATCAAATGAACAAAAC
ATTGAAGATGAAGTTTACAACCACATTGATATGGTTGATGCTGATGATGC
GACAAGTTCTGAGTCTCAAAATCAGGGATCGCCAATGCTCCTCAACACAG
ATGAAGTGTccaatgaaagttttttttatctaaatgaCTTTAGGAATGAA
AATAATCGTGGAGAAGAAGCTGAATTACTGCCAAACaaaattttgagAAA
TAAAGATATGCCAAGTAACGATGATGTTATTGAAATTATTGGTCTATCAA
CAAATAAACAGAATTTAGACGAACTTCCTGTAATTGATGGATCAAATGAA
CAAAACATTGAAGATGAAGTTTACAACCACATTGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042967	XLOC_042967	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00068947-protein	TCONS_00068947-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_490	supercontig	scaffold_490:71001..73602 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.4498	0	0.69109	1.29398	1.13243	3.08594	0.544598	0.536996	0.3575	0	0	0	0	0	0	0	0	0.380254	0	0	1.44283	0.257538	0	0.393311	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00068947 vs. Swiss-Prot (Human)

BLAST of TCONS_00068947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00068947 (transcript) - C. hemisphaerica