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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068915 ID=TCONS_00068915|Name=TCONS_00068915|organism=Clytia hemisphaerica|type=transcript|length=952bp
TTTGCTTAGCTTCATTCAAGGAATTAGCAAGGTCTTGGATGGTTGTTACA
AGTTGGGATTCACATGACCAATGTTTCCTGAAGCCATTCTGGCTATCTGT
CAGAATGTTAGCGTTGTCAAGGTGGGCCATAATGTTGATGTGTAAAATAT
GCTCCAAAATCTTACAGGATGTGGAGGTAAGACTAATTGGCCTGTAGTTA
CAGGCTTTGGATTTGTCGGTTTTACCAGGTTTGAATACAGGGGCAACCAG
GGCATGCCTCCAGTCATCTGGGATGGAAGACTGTTTGAGTGAAACTTGCA
TCACTAAGGTGAGACCAGGAGATATTTGATCAGCAAACTTGTTGAAAAAT
CTTGATGCGACACCATCTGGACCAGCAGCTTTGTTAGGGTTCATATCATT
AAAGGAGTTTCCGAACACCAGGCTCTGTGATATTGATTTCTGGCATGGGT
GTATTCGCTTGACCCTGCAAGGGTAGGATTCGACCGTCAGGAATGGAGAA
GACATTTGAAAACTGTTTGTTGAGGGTGTTTGCTTTCTTGGTGTTATCAA
TGTGTAAGCTGCTGTTGTCTTGCAGAGGTACTACTCCATTATCTTCACAT
CTACGGGATTTTATGAATCGAAACAGTATCTTGGGATTATTTACCCCATC
TGGGCTAacacagtttttgaaaaagttattgAATGCTGATTTGCAAGATT
TACCGCAATCATTTGTTAGCTTTTTGAAGCGACCCCAGTCTGCaggtttt
gatgattttttggcTCCCTTGTAGGCCCTCTTGTTTCGCCAAGATAAACT
TTTACATTTCTGTGTTATCCACGGTTGAGAATAACGACTTGATGTGTATT
TTGAAGAAACAGATAGCATGGCATTTTCGATAAGAGCTTTGAGGGCTTTA
CTCATGTCATTAACAGGGAATTCAGAGTTTTGTGGTCACTGAAACCTGAG
TG Run BLAST on NCBI protein sequence of TCONS_00068915-protein >TCONS_00068915-protein ID=TCONS_00068915-protein|Name=TCONS_00068915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MSKALKALIENAMLSVSSKYTSSRYSQPWITQKCKSLSWRNKRAYKGAKK
SSKPADWGRFKKLTNDCGKSCKSAFNNFFKNCVSPDGVNNPKILFRFIKS
RRCEDNGVVPLQDNSSLHIDNTKKANTLNKQFSNVFSIPDGRILPLQGQA
NTPMPEINITEPGVRKLL Run BLAST on NCBI transcript from alignment at scaffold_49:12167..13118 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068915 ID=TCONS_00068915|Name=TCONS_00068915|organism=Clytia hemisphaerica|type=transcript|length=952bp|location=Sequence derived from alignment at scaffold_49:12167..13118 (Clytia hemisphaerica)
CACTCAGGTTTCAGTGACCACAAAACTCTGAATTCCCTGTTAATGACATG
AGTAAAGCCCTCAAAGCTCTTATCGAAAATGCCATGCTATCTGTTTCTTC
AAAATACACATCAAGTCGTTATTCTCAACCGTGGATAACACAGAAATGTA
AAAGTTTATCTTGGCGAAACAAGAGGGCCTACAAGGGAgccaaaaaatca
tcaaaacctGCAGACTGGGGTCGCTTCAAAAAGCTAACAAATGATTGCGG
TAAATCTTGCAAATCAGCATTcaataactttttcaaaaactgtgtTAGCC
CAGATGGGGTAAATAATCCCAAGATACTGTTTCGATTCATAAAATCCCGT
AGATGTGAAGATAATGGAGTAGTACCTCTGCAAGACAACAGCAGCTTACA
CATTGATAACACCAAGAAAGCAAACACCCTCAACAAACAGTTTTCAAATG
TCTTCTCCATTCCTGACGGTCGAATCCTACCCTTGCAGGGTCAAGCGAAT
ACACCCATGCCAGAAATCAATATCACAGAGCCTGGTGTTCGGAAACTCCT
TTAATGATATGAACCCTAACAAAGCTGCTGGTCCAGATGGTGTCGCATCA
AGATTTTTCAACAAGTTTGCTGATCAAATATCTCCTGGTCTCACCTTAGT
GATGCAAGTTTCACTCAAACAGTCTTCCATCCCAGATGACTGGAGGCATG
CCCTGGTTGCCCCTGTATTCAAACCTGGTAAAACCGACAAATCCAAAGCC
TGTAACTACAGGCCAATTAGTCTTACCTCCACATCCTGTAAGATTTTGGA
GCATATTTTACACATCAACATTATGGCCCACCTTGACAACGCTAACATTC
TGACAGATAGCCAGAATGGCTTCAGGAAACATTGGTCATGTGAATCCCAA
CTTGTAACAACCATCCAAGACCTTGCTAATTCCTTGAATGAAGCTAAGCA
AA Coding sequence (CDS) from alignment at scaffold_49:12167..13118 >TCONS_00068915 ID=TCONS_00068915|Name=TCONS_00068915|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_49:12167..13118 (Clytia hemisphaerica)
ATGAGTAAAGCCCTCAAAGCTCTTATCGAAAATGCCATGCTATCTGTTTC
TTCAAAATACACATCAAGTCGTTATTCTCAACCGTGGATAACACAGAAAT
GTAAAAGTTTATCTTGGCGAAACAAGAGGGCCTACAAGGGAgccaaaaaa
tcatcaaaacctGCAGACTGGGGTCGCTTCAAAAAGCTAACAAATGATTG
CGGTAAATCTTGCAAATCAGCATTcaataactttttcaaaaactgtgtTA
GCCCAGATGGGGTAAATAATCCCAAGATACTGTTTCGATTCATAAAATCC
CGTAGATGTGAAGATAATGGAGTAGTACCTCTGCAAGACAACAGCAGCTT
ACACATTGATAACACCAAGAAAGCAAACACCCTCAACAAACAGTTTTCAA
ATGTCTTCTCCATTCCTGACGGTCGAATCCTACCCTTGCAGGGTCAAGCG
AATACACCCATGCCAGAAATCAATATCACAGAGCCTGGTGTTCGGAAACT
CCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068915-exon-scaffold_49-1491911889:12167..13118 | TCONS_00068915-exon-scaffold_49-1491911889:12167..13118 | Clytia hemisphaerica | exon |
| TCONS_00068915-exon-scaffold_49-1510915933:12167..13118 | TCONS_00068915-exon-scaffold_49-1510915933:12167..13118 | Clytia hemisphaerica | exon |
| TCONS_00068915-exon-scaffold_49-1575043694:12167..13118 | TCONS_00068915-exon-scaffold_49-1575043694:12167..13118 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:12167..13118 . |
Blast
The following BLAST results are available for this feature:
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