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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068913 ID=TCONS_00068913|Name=TCONS_00068913|organism=Clytia hemisphaerica|type=transcript|length=3877bpRun BLAST on NCBI protein sequence of TCONS_00068913-protein >TCONS_00068913-protein ID=TCONS_00068913-protein|Name=TCONS_00068913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=719bp MIRQTYDSSKNIYNYIITIDGLVKRIARNTRPTIFKSVKMWAADPWHHAARun BLAST on NCBI transcript from alignment at scaffold_49:939537..949946- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068913 ID=TCONS_00068913|Name=TCONS_00068913|organism=Clytia hemisphaerica|type=transcript|length=10410bp|location=Sequence derived from alignment at scaffold_49:939537..949946- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_49:939537..949946- >TCONS_00068913 ID=TCONS_00068913|Name=TCONS_00068913|organism=Clytia hemisphaerica|type=CDS|length=10800bp|location=Sequence derived from alignment at scaffold_49:939537..949946- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068913 vs. Swiss-Prot (Human)
Match: PERL (Lactoperoxidase OS=Homo sapiens GN=LPO PE=1 SV=2) HSP 1 Score: 303.138 bits (775), Expect = 5.457e-88 Identity = 212/606 (34.98%), Postives = 314/606 (51.82%), Query Frame = 3
Query: 1737 CQKPTPTRSCQHASSIKSYRSVDGGCNNLKHPTFGAAHTPLRRILKAEYARDG--------NHDTPRGFPNTDPVLPPPNLVTQQCFLXXXXXXXXXXXXXXXLFMTFGQFLDHDFALSHHAD------CKQRCNDFKAWQSPCFPILFNNRDSQCSMNG------RSFAVCSKRAYLD-DRQQSNDISAFIDASNVYSNDPARFQKIRDNKDGKLKMMS-------NGL--LPIDRNFGQHRCKI-----KGGCSLAGEQRVDENMALSSMHTLWAREHNRLAAGLKKINPGWNNERLFQEARKIVGAVMQHIVYTEYVPLLVK------LTPYKGYNSHVDPSIINAFSHAAFRYGHSLVPNHFEQLDKGYNK-KYEPIL-LQEAFRNR-HLINIRGIEPTMFGLL--KNKTRNVDDRFAFSLVRKLFIPVGHSGHLDLTALNVQRGRDHGLPGYNAYRKLCQLPTLKSWADVHRTLIAGVGA-KLQRVYKHPNDIDLFIGGISERNGRGYQVGPLFQCIFKQQFEALRDGDRFFYLNHGVFTTAQLHAIKKVSMATVLCNNLKGIVSVQPKALWEATGHNIRKVCFGGAIHQLDLNAWKGAQN 3413
C P P C S YR++ G CNN + P GAA+ L R L AEY DG T GFP LP V+ + + + S LFM +GQ +DHD + + K +C+++ CFPI+F D + G R+ VC Y R+Q N +++F+DAS VYS++P+ ++R N L +M+ +GL LP D C+ + C LAG+ R E++ L++ HTL+ REHNRLA LK++NP W+ E+L+QEARKI+GA +Q I + +Y+P+L+ + PY+GY+ VDP I N F+ AFR+GH VP+ +LD+ Y EP L L F N ++ GI+P + GLL K+K + L KLF P DL A+N QR RDHG PGYN++R C L ++ +++ L + + A KL +Y P++ID++IG I+E +VGPL C+ +QF+ +RDGDRF++ N GVFT Q +++K+S + ++C+N + I V W + C AI +LDL+ W +N
Sbjct: 123 CGAPAPVVRCDPCSP---YRTITGDCNNRRKPALGAANRALARWLPAEY-EDGLSLPFGWTPGKTRNGFP-----LPLAREVSNK-IVGYLNEEGVLDQNRSLLFMQWGQIVDHDLDFAPDTELGSSEYSKAQCDEYCIQGDNCFPIMFPPNDPKAGTQGKCMPFFRAGFVCPTPPYKSLAREQINALTSFLDASFVYSSEPSLASRLR-NLSSPLGLMAVNQEVSDHGLPYLPYDSK-KPSPCEFINTTARVPCFLAGDSRASEHILLATSHTLFLREHNRLARELKRLNPQWDGEKLYQEARKILGAFVQIITFRDYLPILLGDHMQKWIPPYQGYSESVDPRISNVFTF-AFRFGHLEVPSSMFRLDENYQPWGPEPELPLHTLFFNTWRMVKDGGIDPLVRGLLAKKSKLMKQNKMMTGELRNKLFQPTHRIHGFDLAAINTQRCRDHGQPGYNSWRAFCDLSQPQTLEELNTVLKSKMLAKKLLGLYGTPDNIDIWIGAIAEPLVERGRVGPLLACLLGKQFQQIRDGDRFWWENPGVFTNEQKDSLQKMSFSRLVCDNTR-ITKVPRDPFWANSYPYDFVDC--SAIDKLDLSPWASVKN 712 The following BLAST results are available for this feature:
BLAST of TCONS_00068913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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