TCONS_00068853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068853
Unique NameTCONS_00068853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068853 ID=TCONS_00068853|Name=TCONS_00068853|organism=Clytia hemisphaerica|type=transcript|length=577bp
CTTTAATAAAAGGTTTGTATTATATTCTGAACTTAGAAAGGAATATTCCT
TTGTCTGTAATGTCTGTAATGTCTTATTACAAAAGAGTAGAGGTGCCATA
TAAAAGCAGTGAATGATTGGAAGGGTAACCTTAGTCAACTTATATCTTTG
AAAGAACAAAGTGtaaagaagatgaagaagattattttcatttttgccaG
CCTCCTTTTGGTGCTAACCATTGTGGAAGGAGTTGGAAATGCTACAAAGT
GCGCTCATCAGTGCAGAAAGTCGTTCATGAAATGTTTTAATGCAACTCGT
GATGCTTCGATGTGCGGAGAAGAAGTCAAAATGTGTGCTAAAGAATGCAT
GGGTGGACGACCAACAAACAAAACAAGACCTACACCTAACTCGTGTTTTA
TGGATTGCAGAAAGTCGTTCATGAAATGTTTTAACGCAACTCGTGATGCT
TCGATGTGCGGAGAAGAAGCCAAAATGTGTGCTAAAGAATGTATGGGTGG
ACGACCAACAAACAAACCAAGACCTACACCTAACTCTTGTTTTATGAATT
GCCGTAAAGCAGTTTTCAAGTGTAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_49:363054..364806-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068853 ID=TCONS_00068853|Name=TCONS_00068853|organism=Clytia hemisphaerica|type=transcript|length=1753bp|location=Sequence derived from alignment at scaffold_49:363054..364806- (Clytia hemisphaerica)
CTTTAATAAAAGGTTTGTATTATATTCTGAACTTAGAAAGGAATATTCCT
TTGTCTGTAATGTCTGTAATGTCTTATTACAAAAGAGTAGAGGTGCCATA
TAAAAGCAGTGAATGATTGGAAGGGTAACCTTAGTCAACTTATATCTTTG
AAAGAACAAAGTGTAAAGAAGATGAAGAAGATTATTTTCATTTTTGCCAG
CCTCCTTTTGGTGCTAACCATTGTGGAAGGAGTTGGAAATGCTACAAAGT
GCGCTCATCAGGTACAAGGGACACCTTTTTTATTCTTTGAGATTAGAAAA
ATTAAATCAATCACAGCAGTGTTTTGCGGGTTATCGATAATTACACGCTT
TTTTTTTATAAGAATACACTTTATAAGAATGTCCGTGATGAAAATGGCCA
AAAAATTAGGAGTGATGCTAAGAATATCACCATCATGGAATTTGCTACTC
AAGCTAAGAATGAACATTTTTAGAGCATTTTCAATTAAAAATTACCAATT
ACCCCCAAGAAAGGCTCATTCCTTTCACAAAAATGCCATTTTATGCTTCA
GACGTATGTACTAAACGTTAAATATAGCGAGAATTAGGATCCTAACCTAA
GAATGCTGTAAGGAGATTTTAGGATGATTTTCCCAAAAAAGTTAACAATT
TCCATGATGAAATGGATTTAGACCATTCTTACTAAAAAAAAAGCGTGTAG
TCCTTTTACTATCTTTAATATAAAAAGACCATGTTTCATCCATATTACGG
ATTTCTTGCTAACTGCTAATAATTTGGGTAACTGGAAAACCTTTATATTT
ATTTAACAAACTATATTCTTTTCAACTTTAGTGCAGAAAGTCGTTCATGA
AATGTTTTAATGCAACTCGTGATGCTTCGATGTGCGGAGAAGAAGTCAAA
ATGTGTGCTAAAGAATGCATGGGTGGACGACCAACAAACAAAACAAGACC
TACACCTAACTCGTGTTTTATGGATGTAAGAACTATATTTCTTGCTAACT
GTTAATGTTTAGGTAACTGGAAAACCTTTATATTTATTTAACAAACTATA
TTCTTTTCAACTTTAGTGCAGAAAGTCGTTCATGGAATGTTTTAACGCAA
CTCGTGATGGTTCGATGTGCGGAGAAGAAGTCAAAATGTGTGCTAAAGAA
TGTATGGGTGGACGACCAACAAACAAACCAAGACCTACACCTAACTCGTG
TTTTATGGATGTAAGAACTACATTTCTTGCTAACTGTTAATTGTTAATGT
TTGGGTAACTGGAAACCTTTATATTTATTTATCAAACTATATTCTTTTCA
ACTTTAGTGCAGAAAGTCGTTCATGAAATGTTTTAACGCAACTCGTGATG
CTTCGATGTGCGGAGAAGAAGCCAAAATGTGTGCTAAAGAATGTATGGGT
GGACGACCAACAAACAAACCAAGACCTACACCTAACTCTTGTTTTATGAA
TGTAAGAATTATAATTCTTGCTAACTGTTAATGTTTCGGTAACTGGAAAA
CCTTTATATTTATTTAACAAAGCACTGAGTAAAGAAAACGTTTCATGTCA
TCCAGGATGGCAATCTTCAGAGACTAACTGCTAATGTTTTAATAATAGTA
CAAGACACTTTATTTTCTTCTTTTCTTTTTCTTAATCAAACTTTAGTGCA
TCATCAAACTGATGCAAGAAAAAGGTTTGAAAAGAGCTTTTGCAATAAAT
TTCATTGCATTTCATTAATCTTTAGTGCCGTAAAGCAGTTTTCAAGTGTA
AAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042917XLOC_042917Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068853-exon-scaffold_49-1575043694:364546..364806TCONS_00068853-exon-scaffold_49-1575043694:364546..364806Clytia hemisphaericaexon
TCONS_00068853-exon-scaffold_49-1575043694:363832..363975TCONS_00068853-exon-scaffold_49-1575043694:363832..363975Clytia hemisphaericaexon
TCONS_00068853-exon-scaffold_49-1575043694:363356..363499TCONS_00068853-exon-scaffold_49-1575043694:363356..363499Clytia hemisphaericaexon
TCONS_00068853-exon-scaffold_49-1575043694:363054..363081TCONS_00068853-exon-scaffold_49-1575043694:363054..363081Clytia hemisphaericaexon
TCONS_00068853-exon-scaffold_49-1510915933:364546..364806TCONS_00068853-exon-scaffold_49-1510915933:364546..364806Clytia hemisphaericaexon
TCONS_00068853-exon-scaffold_49-1510915933:363832..363975TCONS_00068853-exon-scaffold_49-1510915933:363832..363975Clytia hemisphaericaexon
TCONS_00068853-exon-scaffold_49-1510915933:363356..363499TCONS_00068853-exon-scaffold_49-1510915933:363356..363499Clytia hemisphaericaexon
TCONS_00068853-exon-scaffold_49-1510915933:363054..363081TCONS_00068853-exon-scaffold_49-1510915933:363054..363081Clytia hemisphaericaexon
TCONS_00068853-exon-scaffold_49-1491911889:364546..364806TCONS_00068853-exon-scaffold_49-1491911889:364546..364806Clytia hemisphaericaexon
TCONS_00068853-exon-scaffold_49-1491911889:363832..363975TCONS_00068853-exon-scaffold_49-1491911889:363832..363975Clytia hemisphaericaexon
TCONS_00068853-exon-scaffold_49-1491911889:363356..363499TCONS_00068853-exon-scaffold_49-1491911889:363356..363499Clytia hemisphaericaexon
TCONS_00068853-exon-scaffold_49-1491911889:363054..363081TCONS_00068853-exon-scaffold_49-1491911889:363054..363081Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:363054..364806 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.115068	0	0	0.297354	0	0.93183	0.533596	0	0	0	0.245496	0.683398	0	0.350618	0	0	0.362719	3.94938	4.0966	3.8439	6.775	0.870837	2.30391	3.45342	3.18355	0	0.14108	0.507111	0.553225
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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