TCONS_00068852 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068852
Unique NameTCONS_00068852
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068852 ID=TCONS_00068852|Name=TCONS_00068852|organism=Clytia hemisphaerica|type=transcript|length=597bp
gtgtagtcctTTTACTATCTTTAATATAAAAAGACCATGTTTCATCCATA
TTACGGATTTCTTGCTAACTGCTAATAATTTGGGTAACTGGAAAACcttt
atatttatttaacaAACTATATTCTTTTCAACTTTAGTGCAGAAAGTCGT
TCATGAAATGTTTTAATGCAACTCGTGATGCTTCGATGTGCGGAGAAGAA
GTCAAAATGTGTGCTAAAGAATGCATGGGTGGACGACCAACAAACAAAAC
AAGACCTACACCTAACTCGTGTTTTATGGATTGCAGAAAGTCGTTCATGG
AATGTTTTAACGCAACTCGTGATGGTTCGATGTGCGGAGAAGAAGTCAAA
ATGTGTGCTAAAGAATGTATGGGTGGACGACCAACAAACAAACCAAGACC
TACACCTAACTCGTGTTTTATGGATTGCAGAAAGTCGTTCATGAAATGTT
TTAACGCAACTCGTGATGCTTCGATGTGCGGAGAAGAAGCCAAAATGTGT
GCTAAAGAATGTATGGGTGGACGACCAACAAACAAACCAAGACCTACACC
TAACTCTTGTTTTATGAATTGCCGTAAAGCAGTTTTCAAGTGTAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_49:363054..364112-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068852 ID=TCONS_00068852|Name=TCONS_00068852|organism=Clytia hemisphaerica|type=transcript|length=1059bp|location=Sequence derived from alignment at scaffold_49:363054..364112- (Clytia hemisphaerica)
GTGTAGTCCTTTTACTATCTTTAATATAAAAAGACCATGTTTCATCCATA
TTACGGATTTCTTGCTAACTGCTAATAATTTGGGTAACTGGAAAACCTTT
ATATTTATTTAACAAACTATATTCTTTTCAACTTTAGTGCAGAAAGTCGT
TCATGAAATGTTTTAATGCAACTCGTGATGCTTCGATGTGCGGAGAAGAA
GTCAAAATGTGTGCTAAAGAATGCATGGGTGGACGACCAACAAACAAAAC
AAGACCTACACCTAACTCGTGTTTTATGGATGTAAGAACTATATTTCTTG
CTAACTGTTAATGTTTAGGTAACTGGAAAACCTTTATATTTATTTAACAA
ACTATATTCTTTTCAACTTTAGTGCAGAAAGTCGTTCATGGAATGTTTTA
ACGCAACTCGTGATGGTTCGATGTGCGGAGAAGAAGTCAAAATGTGTGCT
AAAGAATGTATGGGTGGACGACCAACAAACAAACCAAGACCTACACCTAA
CTCGTGTTTTATGGATGTAAGAACTACATTTCTTGCTAACTGTTAATTGT
TAATGTTTGGGTAACTGGAAACCTTTATATTTATTTATCAAACTATATTC
TTTTCAACTTTAGTGCAGAAAGTCGTTCATGAAATGTTTTAACGCAACTC
GTGATGCTTCGATGTGCGGAGAAGAAGCCAAAATGTGTGCTAAAGAATGT
ATGGGTGGACGACCAACAAACAAACCAAGACCTACACCTAACTCTTGTTT
TATGAATGTAAGAATTATAATTCTTGCTAACTGTTAATGTTTCGGTAACT
GGAAAACCTTTATATTTATTTAACAAAGCACTGAGTAAAGAAAACGTTTC
ATGTCATCCAGGATGGCAATCTTCAGAGACTAACTGCTAATGTTTTAATA
ATAGTACAAGACACTTTATTTTCTTCTTTTCTTTTTCTTAATCAAACTTT
AGTGCATCATCAAACTGATGCAAGAAAAAGGTTTGAAAAGAGCTTTTGCA
ATAAATTTCATTGCATTTCATTAATCTTTAGTGCCGTAAAGCAGTTTTCA
AGTGTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042917XLOC_042917Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068852-exon-scaffold_49-1575043694:363832..364112TCONS_00068852-exon-scaffold_49-1575043694:363832..364112Clytia hemisphaericaexon
TCONS_00068852-exon-scaffold_49-1575043694:363597..363740TCONS_00068852-exon-scaffold_49-1575043694:363597..363740Clytia hemisphaericaexon
TCONS_00068852-exon-scaffold_49-1575043694:363356..363499TCONS_00068852-exon-scaffold_49-1575043694:363356..363499Clytia hemisphaericaexon
TCONS_00068852-exon-scaffold_49-1575043694:363054..363081TCONS_00068852-exon-scaffold_49-1575043694:363054..363081Clytia hemisphaericaexon
TCONS_00068852-exon-scaffold_49-1510915933:363832..364112TCONS_00068852-exon-scaffold_49-1510915933:363832..364112Clytia hemisphaericaexon
TCONS_00068852-exon-scaffold_49-1510915933:363597..363740TCONS_00068852-exon-scaffold_49-1510915933:363597..363740Clytia hemisphaericaexon
TCONS_00068852-exon-scaffold_49-1510915933:363356..363499TCONS_00068852-exon-scaffold_49-1510915933:363356..363499Clytia hemisphaericaexon
TCONS_00068852-exon-scaffold_49-1510915933:363054..363081TCONS_00068852-exon-scaffold_49-1510915933:363054..363081Clytia hemisphaericaexon
TCONS_00068852-exon-scaffold_49-1491911889:363832..364112TCONS_00068852-exon-scaffold_49-1491911889:363832..364112Clytia hemisphaericaexon
TCONS_00068852-exon-scaffold_49-1491911889:363597..363740TCONS_00068852-exon-scaffold_49-1491911889:363597..363740Clytia hemisphaericaexon
TCONS_00068852-exon-scaffold_49-1491911889:363356..363499TCONS_00068852-exon-scaffold_49-1491911889:363356..363499Clytia hemisphaericaexon
TCONS_00068852-exon-scaffold_49-1491911889:363054..363081TCONS_00068852-exon-scaffold_49-1491911889:363054..363081Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:363054..364112 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.18215	0	0	0.406622	1.60299	0	0.809879	0.601138	0.743703	0.731388	1.38429	77.286	42.7016	0.0211622	0.51895	15.4618	28.9103	281.334	306.046	88.9665	112.636	36.1074	72.4786	127.721	185.626	0.110602	0	0.21424	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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