TCONS_00068848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068848
Unique NameTCONS_00068848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length916

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068848 ID=TCONS_00068848|Name=TCONS_00068848|organism=Clytia hemisphaerica|type=transcript|length=916bp
CTTTGTCTGTAATGTCTGTAATGTCTTATTACAAAAGAGTAGAGGTGCCA
TATAAAAGCAGTGAATGATTGGAAGGGTAACCTTAGTCAACTTATATCTT
TGAAAGAACAAAGTGtaaagaagatgaagaagattattttcatttttgcc
aGCCTCCTTTTGGTGCTAACCATTGTGGAAGGAGTTGGAAATGCTACAAA
GTGCGCTCATCAGTGCAGAAAGTCGTTCATGAAATGTTTTAATGCAACTC
GTGATGCTTCGATGTGCGGAGAAGAAGTCAAAATGTGTGCTAAAGAATGC
ATGGGTGGACGACCAACAAACAAAACAAGACCTACACCTAACTCGTGTTT
TATGGATTGCAGAAAGTCGTTCATGAAATGTTTTAACGCAACTCGTGATG
CTTCGATGTGCGGAGAAGAAGCCAAAATGTGTGCTAAAGAATGTATGGGT
GGACGACCAACAAACAAACCAAGACCTACACCTAACTCTTGTTTTATGAA
TTGCCGTAAAGCAGTTTTCAAGTGTAAAAATGGTTCGAGGGATCCAAACG
CATGCATGGCTTTTGCCAAGAGATGTGCAGGCGAATGTTGTGCCTTAACA
TGTCGCAAAAGAATGCAAAGATGTTTGATGAGGACAAAAGATTTCAGAAT
GTGCTCGATAGACGCTCAAAAGTGTTATCGAAGATGCTCCAATTAAAGAA
GATCAACTACTTGTGAATGTGAAGAGAAAATGaacataagaaaaataaaa
agtttcctTTTTGTTCAGAATGCCCAATTTCAACGACATCCAACCATTTT
TGAGCCAGTCCTAAGTTTTAGTCTCGTTTCGGCTTAAAATTTTTCACTAg
acacaaaaaatcaaatttgtttgaaaaataaaaaaaaacacccaaAGTTT
TCCCCTAAGGAACAAG
Run BLAST on NCBI

transcript from alignment at scaffold_49:362072..364758-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068848 ID=TCONS_00068848|Name=TCONS_00068848|organism=Clytia hemisphaerica|type=transcript|length=2687bp|location=Sequence derived from alignment at scaffold_49:362072..364758- (Clytia hemisphaerica)
CTTTGTCTGTAATGTCTGTAATGTCTTATTACAAAAGAGTAGAGGTGCCA
TATAAAAGCAGTGAATGATTGGAAGGGTAACCTTAGTCAACTTATATCTT
TGAAAGAACAAAGTGTAAAGAAGATGAAGAAGATTATTTTCATTTTTGCC
AGCCTCCTTTTGGTGCTAACCATTGTGGAAGGAGTTGGAAATGCTACAAA
GTGCGCTCATCAGGTACAAGGGACACCTTTTTTATTCTTTGAGATTAGAA
AAATTAAATCAATCACAGCAGTGTTTTGCGGGTTATCGATAATTACACGC
TTTTTTTTTATAAGAATACACTTTATAAGAATGTCCGTGATGAAAATGGC
CAAAAAATTAGGAGTGATGCTAAGAATATCACCATCATGGAATTTGCTAC
TCAAGCTAAGAATGAACATTTTTAGAGCATTTTCAATTAAAAATTACCAA
TTACCCCCAAGAAAGGCTCATTCCTTTCACAAAAATGCCATTTTATGCTT
CAGACGTATGTACTAAACGTTAAATATAGCGAGAATTAGGATCCTAACCT
AAGAATGCTGTAAGGAGATTTTAGGATGATTTTCCCAAAAAAGTTAACAA
TTTCCATGATGAAATGGATTTAGACCATTCTTACTAAAAAAAAAGCGTGT
AGTCCTTTTACTATCTTTAATATAAAAAGACCATGTTTCATCCATATTAC
GGATTTCTTGCTAACTGCTAATAATTTGGGTAACTGGAAAACCTTTATAT
TTATTTAACAAACTATATTCTTTTCAACTTTAGTGCAGAAAGTCGTTCAT
GAAATGTTTTAATGCAACTCGTGATGCTTCGATGTGCGGAGAAGAAGTCA
AAATGTGTGCTAAAGAATGCATGGGTGGACGACCAACAAACAAAACAAGA
CCTACACCTAACTCGTGTTTTATGGATGTAAGAACTATATTTCTTGCTAA
CTGTTAATGTTTAGGTAACTGGAAAACCTTTATATTTATTTAACAAACTA
TATTCTTTTCAACTTTAGTGCAGAAAGTCGTTCATGGAATGTTTTAACGC
AACTCGTGATGGTTCGATGTGCGGAGAAGAAGTCAAAATGTGTGCTAAAG
AATGTATGGGTGGACGACCAACAAACAAACCAAGACCTACACCTAACTCG
TGTTTTATGGATGTAAGAACTACATTTCTTGCTAACTGTTAATTGTTAAT
GTTTGGGTAACTGGAAACCTTTATATTTATTTATCAAACTATATTCTTTT
CAACTTTAGTGCAGAAAGTCGTTCATGAAATGTTTTAACGCAACTCGTGA
TGCTTCGATGTGCGGAGAAGAAGCCAAAATGTGTGCTAAAGAATGTATGG
GTGGACGACCAACAAACAAACCAAGACCTACACCTAACTCTTGTTTTATG
AATGTAAGAATTATAATTCTTGCTAACTGTTAATGTTTCGGTAACTGGAA
AACCTTTATATTTATTTAACAAAGCACTGAGTAAAGAAAACGTTTCATGT
CATCCAGGATGGCAATCTTCAGAGACTAACTGCTAATGTTTTAATAATAG
TACAAGACACTTTATTTTCTTCTTTTCTTTTTCTTAATCAAACTTTAGTG
CATCATCAAACTGATGCAAGAAAAAGGTTTGAAAAGAGCTTTTGCAATAA
ATTTCATTGCATTTCATTAATCTTTAGTGCCGTAAAGCAGTTTTCAAGTG
TAAAANAAAAGGTTTGAAAAGAGTTTTTGCAATAAATTTCATTGCATTTC
ATTAATCTTTAGTGCCGTAAAGCAGTTTTCAAGTGTAAAAATGGTTCGAG
GGATCCAAACGCATGCATGGCTTTTGCCAAGAGATGTGCAGGCGAATGTT
GTGCCTTAACAGTAAGTAAAAAAATGTTTTCCATCCTGTCAGTTGTTGAC
TCGATAAGCCTGAATTTCATATCACCCTTAAAACACGAACTGTTACTGCC
CTAAATACTGGGATTAATTTTCCCGATGATTTCGCGGATTTGTTTGTCAT
CCACGAAAATAAGTCCCAATTGAAATCGGAAAAGGTGTTATCAGCGAATT
TTTTTTTGAATTAAATTCCTAAAAAATGTCAATTTTATCTCATAATAGAG
TCATCTGCAAAATTGAGTCCCTGCGAAATCTTGAAATTTTGCGCATGAGC
TTTACCGCGAAATTTAATCCCCGCGAAAATTAAGACTATTAAAGTATTCA
TGTTGGTTCGAAAAATGAAACTCTCAAGCTAGTGAATACGACTTGACCAA
GGAAAACGGACAACGATTTGCTTGCTTGCTTTTACTTGATAGGTAGGTCT
AATGAAGAGAAGGGCCAATATATCAATAGCATAGGACAAATTATGAAGTG
AACGTCTTCTTTCTCTTAAAGTGTCGCAAAAGAATGCAAAGATGTTTGAT
GAGGACAAAAGATTTCAGAATGTGCTCGATAGACGCTCAAAAGTGTTATC
GAAGATGCTCCAATTAAAGAAGATCAACTACTTGTGAATGTGAAGAGAAA
ATGAACATAAGAAAAATAAAAAGTTTCCTTTTTGTTCAGAATGCCCAATT
TCAACGACATCCAACCATTTTTGAGCCAGTCCTAAGTTTTAGTCTCGTTT
CGGCTTAAAATTTTTCACTAGACACAAAAAATCAAATTTGTTTGAAAAAT
AAAAAAAAACACCCAAAGTTTTCCCCTAAGGAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042917XLOC_042917Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068848-exon-scaffold_49-1575043694:364546..364758TCONS_00068848-exon-scaffold_49-1575043694:364546..364758Clytia hemisphaericaexon
TCONS_00068848-exon-scaffold_49-1575043694:363832..363975TCONS_00068848-exon-scaffold_49-1575043694:363832..363975Clytia hemisphaericaexon
TCONS_00068848-exon-scaffold_49-1575043694:363356..363499TCONS_00068848-exon-scaffold_49-1575043694:363356..363499Clytia hemisphaericaexon
TCONS_00068848-exon-scaffold_49-1575043694:362898..362996TCONS_00068848-exon-scaffold_49-1575043694:362898..362996Clytia hemisphaericaexon
TCONS_00068848-exon-scaffold_49-1575043694:362072..362387TCONS_00068848-exon-scaffold_49-1575043694:362072..362387Clytia hemisphaericaexon
TCONS_00068848-exon-scaffold_49-1510915933:364546..364758TCONS_00068848-exon-scaffold_49-1510915933:364546..364758Clytia hemisphaericaexon
TCONS_00068848-exon-scaffold_49-1510915933:363832..363975TCONS_00068848-exon-scaffold_49-1510915933:363832..363975Clytia hemisphaericaexon
TCONS_00068848-exon-scaffold_49-1510915933:363356..363499TCONS_00068848-exon-scaffold_49-1510915933:363356..363499Clytia hemisphaericaexon
TCONS_00068848-exon-scaffold_49-1510915933:362898..362996TCONS_00068848-exon-scaffold_49-1510915933:362898..362996Clytia hemisphaericaexon
TCONS_00068848-exon-scaffold_49-1510915933:362072..362387TCONS_00068848-exon-scaffold_49-1510915933:362072..362387Clytia hemisphaericaexon
TCONS_00068848-exon-scaffold_49-1491911889:364546..364758TCONS_00068848-exon-scaffold_49-1491911889:364546..364758Clytia hemisphaericaexon
TCONS_00068848-exon-scaffold_49-1491911889:363832..363975TCONS_00068848-exon-scaffold_49-1491911889:363832..363975Clytia hemisphaericaexon
TCONS_00068848-exon-scaffold_49-1491911889:363356..363499TCONS_00068848-exon-scaffold_49-1491911889:363356..363499Clytia hemisphaericaexon
TCONS_00068848-exon-scaffold_49-1491911889:362898..362996TCONS_00068848-exon-scaffold_49-1491911889:362898..362996Clytia hemisphaericaexon
TCONS_00068848-exon-scaffold_49-1491911889:362072..362387TCONS_00068848-exon-scaffold_49-1491911889:362072..362387Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:362072..364758 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.421627	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10.1218	21.1204	4.46603	23.3312	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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