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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068840 ID=TCONS_00068840|Name=TCONS_00068840|organism=Clytia hemisphaerica|type=transcript|length=3553bpRun BLAST on NCBI transcript from alignment at scaffold_49:168482..176121- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068840 ID=TCONS_00068840|Name=TCONS_00068840|organism=Clytia hemisphaerica|type=transcript|length=7640bp|location=Sequence derived from alignment at scaffold_49:168482..176121- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00068840 vs. Swiss-Prot (Human)
Match: ACHA6 (Neuronal acetylcholine receptor subunit alpha-6 OS=Homo sapiens GN=CHRNA6 PE=1 SV=1) HSP 1 Score: 261.151 bits (666), Expect = 7.461e-76 Identity = 147/440 (33.41%), Postives = 234/440 (53.18%), Query Frame = 1
Query: 1039 AELRLFEKLFTGYNNKVRPINDKSKPVNTTLDIAYVQLVQLDDREQTLISNVWVRQNWQNDKLTWDPKDFDNITVINVHPSKVWLPDVILYNNAKSGVGAGMMYRFKTKVSIFHNGLNKWYAPAIVRSSCSIDIKNFPFDEQKCDLEFGSWTYNGYELDLFYANDKADTSFYLASAEFDLISAKAKRFVKRYECCPEPYPNIIYTVHVRRQPGFFLFNVIIPSMVITFFAILTFSSPPNVGERISLAIESFLSLSFLCMMVADSIPVNSDVSPLITNFLMVCMMLISLALVFNMISMNLTGTKP----VPRWLHTLAFVYIGPLVGYCRDTNATTNSLGRFFSSRVPSKIENKVRFMIHKLHTQLSE-------KKLYYGEKMLRHLCRSEHCMPQNREEGLHEEERQNMRQILKRSSVENNQ-KFNRDFWRCIAQTVDR 2322
E RLF KLF+ YN +RP+ + S PV ++A QL +D+ Q + +N+W+R W + KL WDP ++D I + V K+W PD++LYNNA VG KTK + +NG+ W PAI +SSC +DI FPFD Q C L+FGSWTY+ E+DL K D + + ++E+++I A + +Y CC E Y +I Y+ ++RR P F+ N+IIP + I+F +L F P + GE+++L I LSL+ +++ ++IP S V PL+ +L+ M+ ++L++V + +N+ P +PRW+ T+ F+ + P V R T G R ++ K + H L E +L ++ L H + + +N E E+ N Q + + +N+ K D W+ +A VDR
Sbjct: 33 TEERLFHKLFSHYNQFIRPVENVSDPVTVHFEVAITQLANVDEVNQIMETNLWLRHIWNDYKLRWDPMEYDGIETLRVPADKIWKPDIVLYNNA---VG-DFQVEGKTKALLKYNGMITWTPPAIFKSSCPMDITFFPFDHQNCSLKFGSWTYDKAEIDLLIIGSKVDMNDFWENSEWEIIDASGYKHDIKYNCCEEIYTDITYSFYIRRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVVPLVGEYLLFTMIFVTLSIVVTVFVLNIHYRTPTTHTMPRWVKTV-FLKLLPQVLLMRWPLDKTRGTGSDAVPRGLARRPAKGKLASHGEPRHLKECFHCHKSNELATSKRRLSH--QPLQWVVENSEHSPEVEDVINSVQFIAENMKSHNETKEVEDDWKYVAMVVDR 465 HSP 2 Score: 166.392 bits (420), Expect = 4.649e-43 Identity = 102/332 (30.72%), Postives = 167/332 (50.30%), Query Frame = 3
Query: 2388 WTPIRITKIKQ*HLPAIVRSSCSIDIKNFPFDEQKCDLEFGSWTYNGYELDLFYANDKADTSFYLASAEFDLISAKAKRFVKRYECCPEPYPNIIYTVHVRRQPGFFLFNVIIPSMVITFFAILTFSSPPNVGERISLAIESFLSLSFLCMMVADSIPVNSDVSPLITNFLMVCMMLISLALVFNMISMNLTGTKP----VPRWLHTLAFVYIGPLVGYCRDTNATTNSLGRFFSSRVPSKIENKVRFMIHKLHTQLSE-------KKLYYGEKMLRHLCRSEHCMPQNREEVLHEEERQNMRQILKRSSVENNQ-KFNRDFWRCIAQTVDR 3347
WTP PAI +SSC +DI FPFD Q C L+FGSWTY+ E+DL K D + + ++E+++I A + +Y CC E Y +I Y+ ++RR P F+ N+IIP + I+F +L F P + GE+++L I LSL+ +++ ++IP S V PL+ +L+ M+ ++L++V + +N+ P +PRW+ T+ F+ + P V R T G R ++ K + H L E +L ++ L H + + +N E E+ N Q + + +N+ K D W+ +A VDR
Sbjct: 148 WTP-----------PAIFKSSCPMDITFFPFDHQNCSLKFGSWTYDKAEIDLLIIGSKVDMNDFWENSEWEIIDASGYKHDIKYNCCEEIYTDITYSFYIRRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVVPLVGEYLLFTMIFVTLSIVVTVFVLNIHYRTPTTHTMPRWVKTV-FLKLLPQVLLMRWPLDKTRGTGSDAVPRGLARRPAKGKLASHGEPRHLKECFHCHKSNELATSKRRLSH--QPLQWVVENSEHSPEVEDVINSVQFIAENMKSHNETKEVEDDWKYVAMVVDR 465 The following BLAST results are available for this feature:
BLAST of TCONS_00068840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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