TCONS_00068823 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068823
Unique NameTCONS_00068823
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1655

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068823 ID=TCONS_00068823|Name=TCONS_00068823|organism=Clytia hemisphaerica|type=transcript|length=1655bp
TTTTAAAGGAGATGGTTCACAAAAGTGTCAGGCAgcaaagtttcaaattt
ttggacctaAAGATAGAGATCTTCGAGCTTATCAGTATAAGGCACATTTC
AGcgattaaacaaaaataatcaaaaatcaataaaaatagaAGTGGTATTA
ACGAAAAGAGCTTGAGAAGCAGTCGACAGTTATTCGATCGAACAACGCGA
ACCAATCCAGAAGCTTATCCGTTTAAGAAGGCTGTTGTTCAAGTTGGGTA
CATAAATAGGACAGATCGAAAGAGAAGAGAACTTGGGAAAATTGAAATAA
GAAAGATGAGATCACAACAAGAAATTCGTATCATGATCCTGGGCGATCAT
TCACTCTGCTTCGAACATGTTTTACGACCCTATTTCAACCTGAAAACTGG
ACAAGATACCAAATTCATCCTTGAAGAATGCGAAACAAAAGGAATCAACA
TGAACTTAGACAAGAAGCCTGTTAACTTGAACGTTCGTGTAGCTACCACA
CGGACAGGGATGTCACGTGTGCCAATGGATAAGATACGAATCAACGACTA
TAAACGCAGAATGGAAGATATTGATGTCATCATGCTGTGTTACTTCCAAA
ACAATTCCAAAACATTATACAACGTCCGCACAAAATATTTGGAAGAAATC
AAACAATACTTTCCTAAAACGCCTTACTTTTTGGTCGGTGTTAATATTGA
GGAATCGATCGACGGATGTGTGAATCCACTCAAGGAGACAATTAACATCC
AGGACCGATGGTTGAAACGCGATCTACAAGTCACCTCCAAAGAAGCTAAA
AGAACGTCGCGGAAGATCAAAGCACGCGGCTCCGTCCAATGTTCCGTGTT
GCGAACGAGTGAGGAAGGGACTGAGGAGAATCATAACGAACAAGAGGAAG
CCGTCTTTGATTACGACGTCGATAAATGTAAAACCGTCAAAACGGCTATC
GATAAAGTCGCAAAGTTTGCATTGAAACGGAAAAATGCACCCTGTATTTT
CCCATTCAAACAAATTNTGTGAATCCACTCAAGGAGACGATTAACATCCA
GGACCGATGGTTGAAACGCGATCTACAAGTCACCTCCAAAGAAGCTAAAA
GAACGTCGCGGAAGATCAAAGCACGCGGCTCCGTCCAATGTTCCGTGTTG
CGAACGAGTGAGGAAGGGACTGAGGAGAATCATAACGAACAAGAGGAAGC
CGTCTTTGATTACGACGTCGATAAATGTAAAACCGTCAAAACGGCTATCG
ATAAAGTCGCAAAGTTTGCATTGAAACGGAAAAATGCACCCTGTATTTTC
CCattcaaacaaatttaaagAAGGAGTTTAAAATTCTTGAGACAATGTGG
TGTCGCTAGATAGATTTTAAAGATAACGAACTCATTAACCCTCCTATAAA
GATTAATGATTATGataaaaaagcaattaaaacAGGGGCAACCCTATCAA
CCGCTGTACGTGCTTTAGAACTGAGAGCAATTCAAAATGCTTGAaaattg
tgtttgtttttttttcaaactgtaaatatttcttataaATGAGAAACAAT
TGTAAATATatttaaaagagaatttttatcaTTAACTTGTGTGTTTTTAT
GTAGGGAAAAAGTCATAACCCAAAAACAGATAAACATAAATAAACGTTAC
GAAAT
Run BLAST on NCBI

protein sequence of Rho GTPase family protein

>TCONS_00068823-protein ID=TCONS_00068823-protein|Name=Rho GTPase family protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MRSQQEIRIMILGDHSLCFEHVLRPYFNLKTGQDTKFILEECETKGINMN
LDKKPVNLNVRVATTRTGMSRVPMDKIRINDYKRRMEDIDVIMLCYFQNN
SKTLYNVRTKYLEEIKQYFPKTPYFLVGVNIEESIDGCVNPLKETINIQD
RWLKRDLQVTSKEAKRTSRKIKARGSVQCSVLRTSEEGTEENHNEQEEAV
FDYDVDKCKTVKTAIDKVAKFALKRKNAPCIFPFKQIX
Run BLAST on NCBI

transcript from alignment at scaffold_49:28971..34060-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068823 ID=TCONS_00068823|Name=TCONS_00068823|organism=Clytia hemisphaerica|type=transcript|length=5090bp|location=Sequence derived from alignment at scaffold_49:28971..34060- (Clytia hemisphaerica)
TTTTAAAGGAGATGGTTCACAAAAGTGTCAGGCAGCAAAGTTTCAAATTT
TTGGACCTAAAGATAGAGATCTTCGAGCTTATCAGTATAAGGCACATTTC
GTAAGTAATTAAGCTCTACTAAATTAATTAAAGTTAACGATGCGTGCTCT
TATCAGCATCTAAAAAAATTCGTTTGGAGACGAAATGTAATGATGATTCT
CTTGAAGATCTCAAATAAGAGACTTCTCACAATTATTCTCAGAAAACATG
TTAAATGTCCTCGAAGAAAGATAACTAATTAGCATCATGGCTATAATCCC
CCAATTTATATCTGAGACACTTCACATGGCTCCCCTTTCCCCCACTGTCA
GCGTTGAGTACTCGGCCATTTCCGGACTCAACACTGATAGTGGGGTCCGG
GGCACGGATTTTTATCTTACAAAAATATTTAGAATTCTTCTGTCTCATAT
TTGTGGGGGATTGTAGGTCAACATACACCTATTTCAACTCCTTCTAAAAT
TGACACATACATGTGGGTTTGTAGAAAAACCACTAAACGAAAGTTATATC
ACAAAGTTTTGGCAGCCATCTATGTTGCTAACGGAAATACAAATAATATT
TACGAGCAATCAAGACAAACAAGATATTGTTTCAAGTGGAATTCATAAGA
GAGCCGAGGGTAATAAGCTAGGATTGTGAAATGTAACAAATTGTTTGGGA
GTTAATTGCTCTGTCAATTCAGAGGATAAGAAAGATACAAATAGAATGAA
TGTGAATCAGAATTGTAAGCGATTGTCTAGACAGGGTATGTTTTACTGGT
CTTGTAACTGTTTCTGCTAGAATTCAAGAAATGATAGCCAAGTTTTATCG
AAATAGAGAAAGTTTTGGAATTAGGAAGGTTCGAATGATACCTAGTGAGT
AAAAACACTAAACGTAAAATACATGTTTTTTTTTATAAGAACGTCCAAAA
TTTTTGAAGCCTTCAGATGTTCTTAACTTTTTGAGTTTTAAGCCTGTTCT
TAACATGTTCTTATTTTCACCATTTTTGAGCATTTTTGTCCATTTTCCTT
AGAAAACAGGTGTCTTAGCCCACGAAGCTTTAAAATGAACTTGTTCTTAA
GAGTTTGGCCACGGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAA
AAAACGTGTAAACGTGTAAAATCGATTACAATCTCATTTCGCGTGAAAGT
TTGTATCAGTTTTTTGATCAGTGACAATTGGAGTCATTGAAATTGAAATC
AAATCATGTTTCATTTATACAAATTGATGATTTACGAATTTGATGTTTTG
ACGCCCTCGTTTTTTGATATGAGGTGCGAAGTTTAGAATATGATGTTTTG
GTAGCCATTTCATATTTTGTGATACCCATAGGTCCTTATGTAATCATTTT
CGAAAACTGAGAACCAAAAGAGGACTGAAAGATGAACCAAGTGTGAATCT
TACACCTTTATGACGAATTCATTATGAAATTTTTAAAATACCTTTAATAG
TTGTTACTTCCTTTGTAAAGTGTTGTAACCAGAGAAAATTTTGGTCCCGA
ATCATTTCGAACGTCACGTCATGGAGTGCCCTTTACTCATAACCACAAGT
TTTAAGGAGCTGATATTTCCGTCAGAGGTCAGTGGGTCAGTACAAGTCAT
ATGTAACCGATACAGCTGTGGCATAAATTATTGATTCTATAACACATTTT
TGGTCATTACTGATTCTTCTATAAAAGCAGGGATGTAAGTAACGGGTGTT
GTTTGCATATTGTATTCTTTTGAAACAAACTGAAAGATGCCATCAGTACT
TCAAATAGTGAAGCGTGCCACGAGGAAAAAATTTCAAGAATTTGAAGTAC
TTTTTGAGAGGTAGGTCGAATCTGAAGTGAAGCTTTATTTAGACGAAACT
CCAGTAACCAATAACATAGTCAGTTCAAGTTCGTTCCATAAAAGGGTATA
AGAACTAATCGAGAGTACTAAAAGATCTGTACAGGAGAAAGAAATGCATA
TCTTGCATTGCAACACTTTTTTGCGGTTCAGTTAATTCCATAGTACTTTC
ATTTCGCCAATCGTTCGGTCTTTTTATTGTGTTCAAAATAAAATAGTGGA
TCATTCTGCAACAATTTCACTCTCGAAATAAGAAGAGATTAATTTCCAGA
TGGAGGCCAAGTAGTGTGGAATAGTGTTTGGTAATTCTGGTGAAACGAGA
TGGAATTAAGGAGTGGTTTGATGGAAGTTTGTTCATTAAATGATAATTAA
TTAAAATGGTATTGGATGATCAGCTTTTACTAGTAAATAGCTGCTTTTAC
TTATTTCAGTTATATAAGATTTGTTGTTGGATAAGTATTGATAGGCTATC
CCAGCTAGTAATCAACGTCAAAACAACGCCCATTTGACATTCATAACGTC
CAAATAACGTTAGATGTACGTTAAAACAACGTTGTCTGCTTGCTGGGATA
TGGAGTAGTTTTAGTACCTTTCAAAATCAATTTTCGATTTCTTAAGATTT
CAGTGAAAATAGCATTCAACGATAATTGTTTTAAATGAGAAGGCTCGTGT
TTAATATAGATAAGGAAACTTTCACGAACTTCTGATAAGAGATTTGTACT
GTAAAATATACTCATATAAATACAGTAATCATCAGTGACGTCTGTTTGGT
GATCGCTAAGCTCCTTTGCACTGAGTGCGTGGTCCGATGTGTGGAAAAGG
AAACTCGTTGGAAAATATTTTTATTCTGATCGTCAGTTTTGTATAAGAAA
CCTAATTTCCCCTCGATCTTTTTATCGATCTCATTCGTAGAGACTTATCA
ACTTTTAGGTGCCTTGAAAAATCATGTTTAGGTGTCGTGAGGGATGAGCC
CAAAAATCTCGTCACATCTATTAACGAAAATGCTTAATACGCAATCAAAC
TCTTATCGAAAAGGCGCGAGTATTAGAATCGCTAGGTGCGACAAAAACAT
ATGAAGCAATTGAGAGGTCATGCAATATCCCTTTTTATTGATGTTGACTT
TAAGTACAAAATATTTCTTGCATAAGAAAACTGAAAGTTAGCTTGTTGAC
TTTTAATTAGTTAGAATCAGAAATAAGTCTTTTTTTGTATGATACTTATT
GCTAAATAGTCCCAAAGGTCCTTTGCGAATTTCGAAAGCATATTATTCTA
GACAACAATAAGTAGAAACTTTATAACGTTGTCAGACTTAACCATACATG
TTAAACAGTTTTAATTTTCTTACAAGAAAAATGTTGATATTAGTTTTAGA
GATGACATCAAGATTTTGATTGCGTCAATCTCAATCGATGATCAAAACAT
GATGTGAAAACCGGGTGCGTTTCAATTGTTTAAGAAAGCTGTTTGTATAA
AATGCCTGATTATTACAATCAGAACTCATCATTATTCATTTTAATGAGGT
GCGTCGTATAAAAGCATTTCAATAGCTCACAATGGTTAGTATGATCAGTC
AGTCAGCATCGGAAGTTAGACCTGATAACAGCTTATTTAAATCTATTCTG
TTATTTAAACATTCTTTACCTCTTTATTTCTATAGAGCGATTAAACAAAA
ATAATCAAAAATCAATAAAAATAGAAGTGGTATTAACGAAAAGAGCTTGA
GAAGCAGTCGACAGTTATTCGATCGAACAACGCGAACCAATCCAGAAGCT
TATCCGTTTAAGAAGGCTGTTGTTCAAGTTGGGTACATAAATAGGACAGA
TCGAAAGAGAAGAGAACTTGGGAAAATTGAAATAAGAAAGATGAGATCAC
AACAAGAAATTCGTATCATGATCCTGGGCGATCATTCACTCTGCTTCGAA
CATGTTTTACGACCCTATTTCAACCTGAAAACTGGACAAGATACCAAATT
CATCCTTGAAGAATGCGAAACAAAAGGAATCAACATGAACTTAGACAAGA
AGCCTGTTAACTTGAACGTTCGTGTAGCTACCACACGGACAGGGATGTCA
CGTGTGCCAATGGATAAGATACGAATCAACGACTATAAACGCAGAATGGA
AGATATTGATGTCATCATGCTGTGTTACTTCCAAAACAATTCCAAAACAT
TATACAACGTCCGCACAAAATATTTGGAAGAAATCAAACAATACTTTCCT
AAAACGCCTTACTTTTTGGTCGGTGTTAATATTGAGGAATCGATCGACGG
ATGTGTGAATCCACTCAAGGAGACAATTAACATCCAGGACCGATGGTTGA
AACGCGATCTACAAGTCACCTCCAAAGAAGCTAAAAGAACGTCGCGGAAG
ATCAAAGCACGCGGCTCCGTCCAATGTTCCGTGTTGCGAACGAGTGAGGA
AGGGACTGAGGAGAATCATAACGAACAAGAGGAAGCCGTCTTTGATTACG
ACGTCGATAAATGTAAAACCGTCAAAACGGCTATCGATAAAGTCGCAAAG
TTTGCATTGAAACGGAAAAATGCACCCTGTATTTTCCCATTCAAACAAAT
TNTGTGAATCCACTCAAGGAGACGATTAACATCCAGGACCGATGGTTGAA
ACGCGATCTACAAGTCACCTCCAAAGAAGCTAAAAGAACGTCGCGGAAGA
TCAAAGCACGCGGCTCCGTCCAATGTTCCGTGTTGCGAACGAGTGAGGAA
GGGACTGAGGAGAATCATAACGAACAAGAGGAAGCCGTCTTTGATTACGA
CGTCGATAAATGTAAAACCGTCAAAACGGCTATCGATAAAGTCGCAAAGT
TTGCATTGAAACGGAAAAATGCACCCTGTATTTTCCCATTCAAACAAATT
TAAAGAAGGAGTTTAAAATTCTTGAGACAATGTGGTGTCGCTAGATAGAT
TTTAAAGATAACGAACTCATTAACCCTCCTATAAAGATTAATGATTATGA
TAAAAAAGCAATTAAAACAGGGGCAACCCTATCAACCGCTGTACGTGCTT
TAGAACTGAGAGCAATTCAAAATGCTTGAAAATTGTGTTTGTTTTTTTTT
CAAACTGTAAATATTTCTTATAAATGAGAAACAATTGTAAATATATTTAA
AAGAGAATTTTTATCATTAACTTGTGTGTTTTTATGTAGGGAAAAAGTCA
TAACCCAAAAACAGATAAACATAAATAAACGTTACGAAAT

Coding sequence (CDS) from alignment at scaffold_49:28971..34060-

>TCONS_00068823 ID=TCONS_00068823|Name=TCONS_00068823|organism=Clytia hemisphaerica|type=CDS|length=717bp|location=Sequence derived from alignment at scaffold_49:28971..34060- (Clytia hemisphaerica)
ATGAGATCACAACAAGAAATTCGTATCATGATCCTGGGCGATCATTCACT
CTGCTTCGAACATGTTTTACGACCCTATTTCAACCTGAAAACTGGACAAG
ATACCAAATTCATCCTTGAAGAATGCGAAACAAAAGGAATCAACATGAAC
TTAGACAAGAAGCCTGTTAACTTGAACGTTCGTGTAGCTACCACACGGAC
AGGGATGTCACGTGTGCCAATGGATAAGATACGAATCAACGACTATAAAC
GCAGAATGGAAGATATTGATGTCATCATGCTGTGTTACTTCCAAAACAAT
TCCAAAACATTATACAACGTCCGCACAAAATATTTGGAAGAAATCAAACA
ATACTTTCCTAAAACGCCTTACTTTTTGGTCGGTGTTAATATTGAGGAAT
CGATCGACGGATGTGTGAATCCACTCAAGGAGACAATTAACATCCAGGAC
CGATGGTTGAAACGCGATCTACAAGTCACCTCCAAAGAAGCTAAAAGAAC
GTCGCGGAAGATCAAAGCACGCGGCTCCGTCCAATGTTCCGTGTTGCGAA
CGAGTGAGGAAGGGACTGAGGAGAATCATAACGAACAAGAGGAAGCCGTC
TTTGATTACGACGTCGATAAATGTAAAACCGTCAAAACGGCTATCGATAA
AGTCGCAAAGTTTGCATTGAAACGGAAAAATGCACCCTGTATTTTCCCAT
TCAAACAAATTNTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042909XLOC_042909Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Rho GTPase family proteinTCONS_00068823-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068823-exon-scaffold_49-1575043694:33961..34060TCONS_00068823-exon-scaffold_49-1575043694:33961..34060Clytia hemisphaericaexon
TCONS_00068823-exon-scaffold_49-1575043694:28971..30525TCONS_00068823-exon-scaffold_49-1575043694:28971..30525Clytia hemisphaericaexon
TCONS_00068823-exon-scaffold_49-1510915933:33961..34060TCONS_00068823-exon-scaffold_49-1510915933:33961..34060Clytia hemisphaericaexon
TCONS_00068823-exon-scaffold_49-1510915933:28971..30525TCONS_00068823-exon-scaffold_49-1510915933:28971..30525Clytia hemisphaericaexon
TCONS_00068823-exon-scaffold_49-1491911889:33961..34060TCONS_00068823-exon-scaffold_49-1491911889:33961..34060Clytia hemisphaericaexon
TCONS_00068823-exon-scaffold_49-1491911889:28971..30525TCONS_00068823-exon-scaffold_49-1491911889:28971..30525Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:28971..34060 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0245351	0.0717767	0.166679	0.434853	22.2675	17.23	4.73156	5.75852	38.1665	41.8205	21.9242	54.6908	58.1883	39.5517	59.4193	27.8687	28.5669	35.2835	43.5298	60.0702	9.06177	7.74081	6.07639	4.65475	8.95636	6.04202	166.867	108.107	97.4907	91.3093
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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