TCONS_00068821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068821
Unique NameTCONS_00068821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length938

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068821 ID=TCONS_00068821|Name=TCONS_00068821|organism=Clytia hemisphaerica|type=transcript|length=938bp
ATTTCCCTAATAATTAATTTCaactttattatttttaattacGTCACAAC
CAGATTCTGACCCCTTAAGGTATAGGTCATCAAAAACCGTTAGTGAATCT
CTGAGATAATGGGTGCTATTGATCGCACAATTTGGGATTTGTGATTAAAA
AAGAATCTAGACAGGGCCTACAGTAACTCACGCGAGCTGGAAATTTTCAG
ATGATATGTAAATGTTAGATTGaaagtttcaagaaaaaaatgacttaTCC
GACGAAACAATATGATTATCATTTCAGTGTAATTATAAAgaactaaaaga
aaaagaaaatatatattatcaAGCAACAATATGGTGCTGGTATCTTTCCA
ATCTCTCGCGAGGACATCCGTCCTCTTCACCAATAAAGCAAATAGCACCA
TCCTTATACGAAACATTGAGAAATGCTTCATTTGTGCTGACATTGCAAAT
TCCAAACGTTACAAGGCGAAATGGAATTCTAAATTCCCGAAAAATGATGG
CATGTCCCGGATGGAGAAACTTGCAGAAAAATTGAACCCACCGATGAGTG
ATCGAGAGAAAAATGTTCCTTTACCTCCTGACATGGGTACTAAAGTGGAT
AGCACGAATCAGATTTTCAGCAGTTACATTCCAGTGGAGAAGAAAAGTTC
CATGGTTTCAAGACAAGGTGTATCACAGAGGTGGGAAGCTTTCAAAGCTA
TGCTAATGTCCACCTATGGGGTAGCAATGATCAAACGAAAAGTCTCTTTC
AAAGCAGTGGACTTTTCGAAATTTGCTCAACAGAAATATATTGAAGTCAA
CGAAGCTctacagaaaaatgaaaaAACACGTGACATCGTGATGAAAGAAA
ACGCCACACTAATGATTGGGCGGgCTTTGAAAACGCAATACCAGAACCCT
GGTAAGAGGTTGGAATGGAAGTTTATTCAAGAAGTGNC
Run BLAST on NCBI

transcript from alignment at scaffold_49:955672..963439+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068821 ID=TCONS_00068821|Name=TCONS_00068821|organism=Clytia hemisphaerica|type=transcript|length=7768bp|location=Sequence derived from alignment at scaffold_49:955672..963439+ (Clytia hemisphaerica)
ATTTCCCTAATAATTAATTTCaactttattatttttaattacGTCACAAC
CAGATTCTGACCCCTTAAGGTATAGGTCATCAAAAACCGTTAGTGAATCT
CTGAGATAATGGGTGCTATTGATCGCACAATTTGGGATTTGTGATTAAAA
AAGAATCTAGACAGGGCCTACAGTAACTCACGCGAGCTGGAAATTTTCAG
ATGATATGTAAATGTTAGATTGaaagtttcaagaaaaaaatgacttaTCC
GACGAAACAATATGATTATCATTTCAGTGTAATTATAAAgaactaaaaga
aaaagaaaatatatattatcaAGCAACAATATGGTGCTGGTATCTTTCCA
ATCTCTCGCGAGGACATCCGTCCTCTTCACCAATAAAGCAAATGTAAGTA
TGCTAGTCTAGTCCTTATTTTGTGATTCGCttttcgaacttctattattt
gaatctttctataattcgaatttgtTTCCAGAAAccttcttaaaatattt
tatctaatttgaatctctctataattcgaacggATAtgattccccgttcg
agttcgaattagagagagtcaactgtacttTGTTTTCACTAGAAGTAATC
ACTTATGATGATTTTAATCACCCCTATTTTACAAGGCGAGTTGTTCTTCT
AGTAGCAATCTAGGGTCAATTTTCTCAACAGAAAGAGTTGTGATAGATTT
AGATTCACTTTTAACCAAACACTATCTCAAATATCTTTATAGAGCACCAT
CCTTATACGAAACATTGAGAAATGCTTCATTTGTGCTGACATTGCAAATT
CCAAACGTTACAAGGCGAAATGGAATTCTAAATTCCCGAAAAATGATGGC
ATGTCCCGGATGGAGAAACTTGCAGAAAAATTGAACCCACCGATGAGTGA
TCGAGAGAAAAATGTTCCTTTACCTCCTGACATGGGTACTAAAGTGGATA
GCACGAGTAAGTGAGAAAGGGTTTTATTTGGACGTCTTAGCCCTTGGTCC
ACTTGAGGCTTTTTTATAGCCTGGATGGCGTGATTAGGTGGAAGGACTTC
ACTGGACTCGGCTTCATCAACAATTATCAGAAAGCAAAGCCTCAAAAAAG
ATTTAGTCTAATGACTTCTGGACTTGTGGGTATGGTGGCTGCCCTATCTT
GCTATCTCATAATTTTGTCCCAGTTTAACCATAGTACTATTACACTAtga
cgttttttatttttgtctccACAGATCAGATTTTCAGCAGTTACATTCCA
GTGGAGAAGAAAAGTTCCATGGTTTCAAGACAAGTGAGTAACTTTGGGct
tgttttagaaaatgaagTATTTTTCATTAATCATAGCTTAGATTACTATT
TTTGATTGATCCACCAGGTCTACTAACAAATGTAAcgcaatacatgtttt
ttttataagcaagtgtatgccgcttggtcaggctcgtgtatgcttaagtt
ctcaaagtattcaggcatagtttatgcttattatatgcttaagaatcatg
cttatgattcacctcgagccaagtttttagtgaaatttcagaaattttgt
aaaaatttgttcagattttggggcagtggaatgtaggaaaccgtggaaag
tctttttttttacttgacctctaccaaacctttttaaaccgataaaaatg
acaacttgaaaaatatttcaggctgacatatatatgcttatgttatgttt
aggaattctgcaaatctgagccttcatatgcttataagcgttatgcttat
aaaaaaaacatgtactccTTGAATTTCAGGGTGTATCACAGAGGTGGGAA
GCTTTCAAAGCTATGCTAATGTCCACCTATGGGTAAGCCAACATTGTCAT
GTTTTTATCGACTAGAACGAAGTAAATTTCCATTGGATGTATTTTCCAAA
TTAAACTGAGGTTTTTTTAGAAAGGTTCTGTAATCAATTTTGATCCGTAA
GATGAACGGCTGTGCTATCTTGTTAATCCATTAAAAGACCAAATATCAAG
AGAAAAGACACAATCTAAAGTTTGCGTTTATCGACCCAGTGGTATTAATA
TTGAAAGTTTATCGTGGATTGGATcgcgagatttacgtttggttacgttt
cgagagattcttctcccatcatcgggcaacGTGGAGGATGTTTTCTCCAC
TATTTCCANTACATTTGGCTACGTTTCGGTAGATTCTTTTCCCACCATCG
GACAATGCGGAGGATGTTTCCACTATTTGTACTAAGACCTTCTGATTACC
CATAATAAGAAAAGGGACAAATCAATAGCCTGTTCTTATTGTCGCCGTCA
TCTTATTCATAATAAGTTATAATATTTCTAGGGTAGCAATGATCAAACGA
AAAGTCTCTTTCAAAGCAGTGGACTTTTCGAAATTTGCTCAACAGAAATA
TATTGAAGTCAACGAAGCTctacagaaaaatgaaaagtaaGAAACCATTA
ATCTATCCATTGCTTGATCCAGATGCATCAATTTGTTTTGTTCACTAAGC
CTAGAGTAGAAAGTTGAAATTcggtatatattttttcttctctaatcact
tcttttttggacctacctggaggtcctataaattaacctttgcgtccgtc
cgtccgtctgttaccagcttttctcgagattggctcatcagttttttccg
atttttctgatttttggcacaaaggaacaaaatagcaatgcctgaaatgt
gtcattggattttttcgttttatatcttttttttttttattattatttat
aagaattcccacgattaagcatggttcaattttaaatgaaactgattttg
gtagccgaaactttcttaaaatcgccagaacagcctagaaccgccggaaa
aacggttttcttgaattttgatTTATGAGGGGTCAGAACTTTTGATTTGC
CAATTTGATTTTATCGTAGCACTTTTGCGCCATCCGAACTTTTATAACTT
TAGCGCGCTGGAATGTTGAGTAAATTTTTGTGAAGTTGAGCCCAAATACG
CAAACGTGTTAACAATGATAATGCACTGTGATATTTAGTGTTTTTGGTTT
TCAATTGAACTAATTATTCTAGTATTCCTCAGAAATCGCCGGAAGAGCAA
AAAATCACTAGGAAACCGTTCGCTCGTCCGTTCTTTTTTCACGATCTTTT
CGATTATCACTTTAAATTACAGTCAactttccataactcgaacctcctcA
AATCGATTATCTCTATAACGATTTTTCCTGTCTCTTGAGGAGATTTTCAG
GCTATTTTGCCTCTCTAGAACTCAAATTTCTGTAACTCAGAGGATTACTG
ATTATCCCCTTGGCGTTCCAGCACTCGACTATACTTCCCTACTTGGTCTA
ACTTCAGGACGGTCCAATCAGCGTTCCggcttcttcttttttctttctga
aCAATTCTCCGAAAAAAAACGATCTATTCATTTATTGCAGAACACGTGAC
ATCGTGATGAAAGAAAACGCCACACTAATGATTGGGCGGGTAAGTCAAGT
ATTTTGCCTTTGGTTCGATTGGTGCATAATACAGCACCCCCATTTCGTAG
GCCCGATTAAACCCTCTGCATATTTGCAAAATTTGCTCTAAAATTTGTTC
CTCAGTATAAAATACACTTGGCTGTAAAGACGGGGCTGTTGGAGTTTTGA
CTTCAGCAACATATTTTCAATTCGTAGTAGTAGTAGATTATGATAATTgt
ggaaagaaaaattgagGTCGATTTTATTTGTGTCATATCATTAccttaaa
ataattataaattttacaagataaataagaaaattataattgtGATTTTT
GCCGTTGCCGAGAAGTTGTCCAATGATCGGTAATCTTTCTGTGCTACGAG
TTACGCTTTCACGTATTTACCGCACGCTGGTTTTGTGCAATTCCATTTTC
CACATTTACGAATGACAATGAACTTCAAACATCTTCGGGAACATTGGCGT
GAACAAAAGCGGCAATACTTTTGGTTGAAATATTTCTTGTAGTAGACTTT
ACGCCAGCAAGTTCTGCTCACTCTTTTGAAGTAGAATTTCCAGACGAAGA
TACGGCGTATGACGCATTGTCGGTATCTATGGAAACGCTTTTGGGTTTCC
ACCTTGAGCACTTTGGCCTTtggatctgtaaaataaattTAGATAAACTA
TTGAAGTGTGGGACTAGAATAGGATAAAATATTTACCTTGGCTGAGAGTT
ATTGTTGCCTTTTGCTCTAAAACCAAAATCTCGCtttaatattcttataa
aaagcgtgtatttagaTTGGCAAGAGTGAAGTATTTTATATTATGTAAAG
AATGAGGATTGGAATTTCCAAATGGAGTTTCCAATTTGTGACTGTTTGTT
ATAGGTAATAAAGATACTGCAATTTAACCCAAATGTTAGAGGTAAAGTTG
TGGGAGAGTGGCTAATTTGTTGGGCTAGTGACAAAATTTTCCTTCGTTTT
CCCGGTAAAGTACCTTGTTCTTCTTCATCCTTTAATAATTCTTCATCGTT
TTGTGGCTCGTCTTTTTCACTCTCTGCTTCTGTTTCTTCTTGCCCGTCCG
TCTCATCTTCAGTTTTACTCTCATCTATCTCATCCGACTCTTCTGGTTCG
TCCGATTCGGGTTCATCGGATTCTTTTTCGGGTTCATCGGATTCTTTTTC
GGGTTCATCGGATTTATTTTCAGGTTCGTTTTCCAATTCATCTGATTCTT
TTTCAGATTCATCGGATTCATTTTCAGATTCATCGGATTCATTTTCGGAT
TCATCGGATTCATTTTCGGATTCATTTTCGGATTCATCGGATTCATTTTC
GGATTCATCGGATTCATTTTCGGATTCATCGGATTCTTTTTCAGATTCAT
CGGATTCGATGTCTGATCCGTTTTGTGATTCATCTTCGTCGGATAGATTT
TCGGGTTCACTATCGGGTTCTAAAGATTCATCATCGGATTCATCGGAATC
AGTTTCGAGTTCATCCTCTTTCATGTCTTGTAAATCGGTTTCTTCATCTT
GgcgaaaatcttcattttctaattCTTTGGGTTCATCGTCCAATGAATTt
tcacctgaaaaaaaaaacaaataatttttaattttgaaatacctACCTCG
TTgttcgaatttttttaaagctGGTAGGGTTGAAGAgcttaacctttcaa
agccgctaacttttttgaaaaaggccaaaaatttcatcatttttttctgt
aaatttattttttcaaaggcaatttctcgaccaggacaaacgattcaggt
atcaactttgccatcgttggaaagctctttctctcagctacaaaaaatag
cagattttttttctctgaatctcaagtggtcaggagttatgaccaaaaga
ctgtatcggtaaaatgaccttttctaaacgtatatatacgtcttTCGACT
CCTAAGGGTTAATACAAATGCGGGAACATTGATTCATTTTGTTGCTTTCc
attaaaaaatgttcaaaattgaATCTTGGACAAGTTAACTCTACTAAAAG
TTCGGAATAGTTACTGTAAGGTTTAGTTAAAATCTGTAATCAAAACTATT
TTTACTACGGAATATAACACTACACACAAAAATGATGTTCGAATTACACT
TTTttgtttaagaaatattttaaaagaacaacgaggctcaaaatcgccat
aaaataagaacatactaagaaCAATGATCAGCctggaattactcaatttc
aagcagtTTATGTTATTTATGTAATAGGCAATTTAGGTCAAAgctagtaa
aaattgggtaaaaagcttaaaatacctcaattccaccctataaataagaa
catgacaagaacaatttgaggctcaaagtgccaaaaagataagaacagtc
gagtgtcagcaaaattttactggttcttctAAATAAAAGTATACCCAAAT
TAGATCTTTTTACTTACAATTAATTGTGAATACCAAGAAGGCTAACAAGA
AAATCCCTTTCCAAATCTTCATTCTGATTTCGTCTTTGAACGTTCAACCA
TTAAGATTGAATGTCTTTCTCACTTTCAGATTTGCATTTTTATAGTGTTT
TTTAAGTGTTGTAAACCCACTAAGTGCTTCATGGTTGTCGCATATTTTTA
ATAGACAGCATGATGTTTAATGATTTTATGATGCATGGTAGAAACTGTCT
CATTTTGggattataattttctcgaaagccacatggaaaaaatgaaaaag
tttaattatTCGCTTGATGATTTCCTTTGCTACTTATAAGCATCATTCTA
TAAAGTATAATTGTAGATTTCTCAGGTCTTTTGCTCACATACAAGACACT
TATCAAGACAAGCACAGGTTTTTGAGGACTGAATTATCAGTCTAGTAACA
ACACTGTTGGTTTTTAGGCTGATAAGAATGTTTTTTGCTAAAGTTTTAGC
ATTCACTTAATTTATTTTGGATTTATAAGAAAATCTCCTAAGAAGTATCA
TGTTCTTTCAAATAATTACTATGATTAATTACACTTAAAGTATAACCAAG
GCTCAATTAGAGATAATTGGGGTAGAAAACGTCCATGCTTGTGGGTTCAT
TTTCTACAATTGTTATTTATTCAGAAACTGTTTCGACAGTATGCTTTTTC
TTCTCCATTTGTATTTTCATTCGTATACTTAACTTCCTCATATGCTTGCT
TTATTGCaaatacagttgatgctctctaattcgacgttctactattagat
aggctctcttattcgatgaaatttaaagtccccgtcaacaagaaactctc
ttaaacgacgctcccttattcgataagctcccttattcgataagctccct
tattcgataagctcccttattcgatgaaaatccaattccccttgaagatc
gaattagagagcgtaaaCTGTAATAATACCAAAGATGGCTGGAGAATGAT
ATCCCTTTATCAGACTTTAAAGTGAATAGTAGATATGTATAAAGAGTTAT
TTAACCCTaatatccccaggggggggggNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ncccttattcaatgaaaatccaattccccttgaagatcgaattaaagaga
gcgTAAACTGTAATAATACCAAAGATGGCCGGATTAAGATATCCCTTTAT
CAGACTTTAAAGTGAATAGTAGATAATATGTAAAAAGAGttatttaaccc
tattagcctcaggggggggtagaatcgtCCACGCTGGTGTTATTTTGTGC
ATatctcgaaaaaaaaaattgtgataaCGTCATCGCTTTTTGAATGcctt
caacaaattttttttcctcccTGGAAGTTTGTGTCATGATAGATCTGTAC
CAATTGTTATGGCCGAAGCTTTTCTAGATCTCCCCTGGAGCCGCAAAAAC
CAAAAGAGCTCGGGGTTAATAgggttaaaaacaaaaaacctttTACCTTT
GAGTCTACAGCACTGTGGTTGAGTTGTTTACCTTTTCGTTTGTTAGCAAA
TACATGTTTATATACATACAAGGGATTCTTCGGAATTTCTGactgttttt
gaattttattgtaTATTTTGTGTATCTTTGACAAttccttcttttctttt
caggCTTTGAAAACGCAATACCAGAACCCTGGTAAGAGGTTGGAATGGAA
GTTTATTCAAGAAGTGNC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042908XLOC_042908Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068821-exon-scaffold_49-1491911889:955672..956064TCONS_00068821-exon-scaffold_49-1491911889:955672..956064Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1510915933:955672..956064TCONS_00068821-exon-scaffold_49-1510915933:955672..956064Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1575043694:955672..956064TCONS_00068821-exon-scaffold_49-1575043694:955672..956064Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1491911889:956414..956627TCONS_00068821-exon-scaffold_49-1491911889:956414..956627Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1510915933:956414..956627TCONS_00068821-exon-scaffold_49-1510915933:956414..956627Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1575043694:956414..956627TCONS_00068821-exon-scaffold_49-1575043694:956414..956627Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1491911889:956896..956954TCONS_00068821-exon-scaffold_49-1491911889:956896..956954Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1510915933:956896..956954TCONS_00068821-exon-scaffold_49-1510915933:956896..956954Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1575043694:956896..956954TCONS_00068821-exon-scaffold_49-1575043694:956896..956954Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1491911889:957451..957503TCONS_00068821-exon-scaffold_49-1491911889:957451..957503Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1510915933:957451..957503TCONS_00068821-exon-scaffold_49-1510915933:957451..957503Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1575043694:957451..957503TCONS_00068821-exon-scaffold_49-1575043694:957451..957503Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1491911889:958003..958107TCONS_00068821-exon-scaffold_49-1491911889:958003..958107Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1510915933:958003..958107TCONS_00068821-exon-scaffold_49-1510915933:958003..958107Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1575043694:958003..958107TCONS_00068821-exon-scaffold_49-1575043694:958003..958107Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1491911889:959112..959160TCONS_00068821-exon-scaffold_49-1491911889:959112..959160Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1510915933:959112..959160TCONS_00068821-exon-scaffold_49-1510915933:959112..959160Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1575043694:959112..959160TCONS_00068821-exon-scaffold_49-1575043694:959112..959160Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1491911889:963375..963439TCONS_00068821-exon-scaffold_49-1491911889:963375..963439Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1510915933:963375..963439TCONS_00068821-exon-scaffold_49-1510915933:963375..963439Clytia hemisphaericaexon
TCONS_00068821-exon-scaffold_49-1575043694:963375..963439TCONS_00068821-exon-scaffold_49-1575043694:963375..963439Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:955672..963439 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.8707	13.6716	5.4936	3.38591	6.79215	8.4676	3.20359	6.4296	6.038	3.8851	2.3244	6.09487	3.81762	3.79308	6.64212	5.91121	12.9777	11.199	2.4232	1.5075	4.44292	5.78648	6.97366	7.96751	6.14498	4.77723	1.65164	1.20146	3.827	3.05298
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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