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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068820 ID=TCONS_00068820|Name=TCONS_00068820|organism=Clytia hemisphaerica|type=transcript|length=1805bp
AGCTTTTTTTCCACAATTTATTGTATGGTAATAAATGGCATTAAAATGgc
acaaaggaaatttttaatATGCTTTCACGTctattattttattgttttca
gtTTTGCAGTAGAGGAAGTAATTTTTGATATATCATCAACCGTTGAAAAT
TAAAAGGGGAGTTAAAGCTGCAAGCTGTGTGGAAGGAGTGCACTTAACAA
GACAATTGAAAAAAGAAGGTTTTCCCTCAAAAGGTTTTACGAACAACTTT
TTGGATAAGGGTTGCGAAGGTTGTACAACACACGTAAAGATGTCAGCATT
TAAGAAGGAATTTAAGTGTTCAAATTTCGGGTTGAGCTACCACTGTGTTG
GAGATTTCTATAGACCACAGTGCATCCCTCAAATTGCACTATTGGTAATT
CGAGTTATCATCGCCTTATACACCACTGCATCCATGCTAGCTGATATGGT
TGATTTCTTTGAAACAAAGAGTAACGGTGGCTGTTGGTTTGTATTCTTCA
CATCGTGGAATTATCTGACGTGTGTATTTTACTTTATACTCGTCACAATC
GGCACAATTTCTTATTACTCCAAAAAGCGCCAAGGTTGCGACCCCGACGT
GCCAATGTCTTCAATGAATCCAAATCAATATGCGTCTACAACTGATATGC
TGGAATCTGGCTCCCCCGATCTATCAACCGAATCGGAAGACCTGGGAAAT
CGGTTGAGCTGTTACGATAAGATTATTTGGTTATTTTTCAATATCAGTAT
TGCAGTTTGTACGTTGGTAGTTGCTTCGTATTGGATTGTGCTTTTTGATG
GTAGCCAGGATCTTGATTTCTTTAACATCGATCGACATGGTATCATTCTG
GCGATGGTTTTGATCGATTTCTCATTACACCGTATTCCATACAGAGTCTT
ACATTTCGTTTATCCGATGATTTTCTTCATCCTTTACTTCATTTTTCATG
TTATTTACTCATTCGCCTCTGAGGATGTCATTTATTCACCGATTAACTGG
CAAGATAATCCAACCAAAGCTGGTATCTTGTTTTTGGTCATTATTGTTCT
GTCAGGTGTCTTCCATTTCGTATTCTATTGGATCGACTATGGTAAAAAAT
TGTTAGGTGAAAGATGTTGCCAAACAAATACAATGGCTTGAATTGGAAAA
TTGAAAAGTCGTTTTTTTTATCGGATGGGTAATAACTTAGAAGATGCTAA
ACAGTTTCCAAATGTTGGGCTCGAAATTTATAATGGTTAGGACTTTCGAA
GTTTCTTGGATATAGTCGAAATGGTTAGATAAAAAGTTGGCTTTTGCAAG
TTATAAATTattagaaaatggaaaaatttctattttatgcGGATTAATTT
TGGGCGAATTTTGTCCAAATTAAAATCCccacaaaaaatttaaaatttgg
tttcaccaaattaaatttaaaacgATGTAGTCGAAATATTTATCAGtata
ggaaaatgaaagaaataaaacgagtgttggaaaaaaaattagttttgaaa
acgaaaagtATTACCAGTATATATTAAAGGAACTTATTCTGGCGGGAACC
AATTTTGGCAAGGAGCAAAAATCCTAAACATTTTAATGTTGGCatgaact
tattttggcgaatgatccaactttttaatttttgcgagaactaattttgg
tgaatgacatgctaaatctgttctattttgccttattttcagcaattttg
atgattttcagggatattttggcaaaatgcaaaaaaaaaattgacgaatg
ggtgaaatatttaattttggcgagcacTACTAATGTTGGCGATTTTTGTC
TGAAC Run BLAST on NCBI protein sequence of TCONS_00068820-protein >TCONS_00068820-protein ID=TCONS_00068820-protein|Name=TCONS_00068820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MSAFKKEFKCSNFGLSYHCVGDFYRPQCIPQIALLVIRVIIALYTTASML
ADMVDFFETKSNGGCWFVFFTSWNYLTCVFYFILVTIGTISYYSKKRQGC
DPDVPMSSMNPNQYASTTDMLESGSPDLSTESEDLGNRLSCYDKIIWLFF
NISIAVCTLVVASYWIVLFDGSQDLDFFNIDRHGIILAMVLIDFSLHRIP
YRVLHFVYPMIFFILYFIFHVIYSFASEDVIYSPINWQDNPTKAGILFLV
IIVLSGVFHFVFYWIDYGKKLLGERCCQTNTMA Run BLAST on NCBI transcript from alignment at scaffold_49:911244..913442+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068820 ID=TCONS_00068820|Name=TCONS_00068820|organism=Clytia hemisphaerica|type=transcript|length=2199bp|location=Sequence derived from alignment at scaffold_49:911244..913442+ (Clytia hemisphaerica)
AGCTTTTTTTCCACAATTTATTGTATGGTAATAAATGGCATTAAAATGgc
acaaaggaaatttttaatATGCTTTCACGTctattattttattgttttca
gtTTTGCAGTAGAGGAAGTAATTTTTGATATATCATCAACCGTTGAAAAT
TAAAAGGGGAGTTAAAGCTGCAAGCTGTGTGGAAGGAGTGCACTTAACAA
GACAATTGAAAAAAGAAGGTTTTCCCTCAAAAGGTTTTACGAACAACTTT
TTGGATAAGGGTTGCGAAGGTTGTACAACACACGTAAAGATGTCAGCATT
TAAGAAGGAATTTAAGTGTTCAAATTTCGGGTTGAGCTACCACTGTGTTG
GAGATTTCTATAGACCACAGGTAAGTTTATTTGGTGAAGATTATATGGTG
TAAACGAAACATTCTCAACCAAatcattttaaatctttttttcacttttt
cacaagCCTTTCATTTACTACACAAGGACTACCCTGAGTAgaagaggcca
agttttcaaagagaaaatatcaacCTCTGGCGATATTTTGTTCGAGCTGT
GATGTACGAGTGGTTAAAAATCGTCGACATTTTTAAGTCCGGGGCAAAAA
ATCTTGACGCTAGGTGGAGGAGCACGGTAAAAGTAGAAATCTCTCACTAT
AACACCATACACTTAATTAGCATTTTTGGAAAAGGGCCATATTAATTGCC
TTTGCTCTGATTACAAATCAAAATATCATTCCAAATGAAATATATTCATC
TCTTTTTACTTTAGTGCATCCCTCAAATTGCACTATTGGTAATTCGAGTT
ATCATCGCCTTATACACCACTGCATCCATGCTAGCTGATATGGTTGATTT
CTTTGAAACAAAGAGTAACGGTGGCTGTTGGTTTGTATTCTTCACATCGT
GGAATTATCTGACGTGTGTATTTTACTTTATACTCGTCACAATCGGCACA
ATTTCTTATTACTCCAAAAAGCGCCAAGGTTGCGACCCCGACGTGCCAAT
GTCTTCAATGAATCCAAATCAATATGCGTCTACAACTGATATGCTGGAAT
CTGGCTCCCCCGATCTATCAACCGAATCGGAAGACCTGGGAAATCGGTTG
AGCTGTTACGATAAGATTATTTGGTTATTTTTCAATATCAGTATTGCAGT
TTGTACGTTGGTAGTTGCTTCGTATTGGATTGTGCTTTTTGATGGTAGCC
AGGATCTTGATTTCTTTAACATCGATCGACATGGTATCATTCTGGCGATG
GTTTTGATCGATTTCTCATTACACCGTATTCCATACAGAGTCTTACATTT
CGTTTATCCGATGATTTTCTTCATCCTTTACTTCATTTTTCATGTTATTT
ACTCATTCGCCTCTGAGGATGTCATTTATTCACCGATTAACTGGCAAGAT
AATCCAACCAAAGCTGGTATCTTGTTTTTGGTCATTATTGTTCTGTCAGG
TGTCTTCCATTTCGTATTCTATTGGATCGACTATGGTAAAAAATTGTTAG
GTGAAAGATGTTGCCAAACAAATACAATGGCTTGAATTGGAAAATTGAAA
AGTCGTTTTTTTTATCGGATGGGTAATAACTTAGAAGATGCTAAACAGTT
TCCAAATGTTGGGCTCGAAATTTATAATGGTTAGGACTTTCGAAGTTTCT
TGGATATAGTCGAAATGGTTAGATAAAAAGTTGGCTTTTGCAAGTTATAA
ATTattagaaaatggaaaaatttctattttatgcGGATTAATTTTGGGCG
AATTTTGTCCAAATTAAAATCCccacaaaaaatttaaaatttggtttcac
caaattaaatttaaaacgATGTAGTCGAAATATTTATCAGtataggaaaa
tgaaagaaataaaacgagtgttggaaaaaaaattagttttgaaaacgaaa
agtATTACCAGTATATATTAAAGGAACTTATTCTGGCGGGAACCAATTTT
GGCAAGGAGCAAAAATCCTAAACATTTTAATGTTGGCatgaacttatttt
ggcgaatgatccaactttttaatttttgcgagaactaattttggtgaatg
acatgctaaatctgttctattttgccttattttcagcaattttgatgatt
ttcagggatattttggcaaaatgcaaaaaaaaaattgacgaatgggtgaa
atatttaattttggcgagcacTACTAATGTTGGCGATTTTTGTCTGAAC Coding sequence (CDS) from alignment at scaffold_49:911244..913442+ >TCONS_00068820 ID=TCONS_00068820|Name=TCONS_00068820|organism=Clytia hemisphaerica|type=CDS|length=1704bp|location=Sequence derived from alignment at scaffold_49:911244..913442+ (Clytia hemisphaerica)
ATGTCAGCATTTAAGAAGGAATTTAAGTGTTCAAATTTCGGGTTGAGCTA
CCACTGTGTTGGAGATTTCTATAGACCACAGTGCATCCCTCAAATTGCAC
TATTGGTAATTCGAGTTATCATCGCCTTATACACCACTGCATCCATGCTA
GCTGATATGGTTGATTTCTTTGAAACAAAGAGTAACGGTGGCTGTTGGTT
TGTATTCTTCACATCGTGGAATTATCTGACGTGTGTATTTTACTTTATAC
TCGTCACAATCGGCACAATTTCTTATTACTCCAAAAAGCGCCAAGGTTGC
GACCCCGACGTGCCAATGTCTTCAATGAATCCAAATCAATATGCGTCTAC
AACTGATATGCTGGAATCTGGCTCCCCCGATCTATCAACCGAATCGGAAG
ACCTGGGAAATCGGTTGAGCTGTTACGATAAGATTATTTGGTTATTTTTC
AATATCAGTATTGCAGTTTGTACGTTGGTAGTTGCTTCGTATTGGATTGT
GCTTTTTGATGGTAGCCAGGATCTTGATTTCTTTAACATCGATCGACATG
GTATCATTCTGGCGATGGTTTTGATCGATTTCTCATTACACCGTATTCCA
TACAGAGTCTTACATTTCGTTTATCCGATGATTTTCTTCATCCTTTACTT
CATTTTTCATGTTATTTACTCATTCGCCTCTGAGGATGTCATTTATTCAC
CGATTAACTGGCAAGATAATCCAACCAAAGCTGGTATCTTGTTTTTGGTC
ATTATTGTTCTGTCAGGTGTCTTCCATTTCGTATTCTATTGGATCGACTA
TGGTAAAAAATTGTTAGGTGAAAGATGTTGCCAAACAAATACAATGGCTT
GAATGTCAGCATTTAAGAAGGAATTTAAGTGTTCAAATTTCGGGTTGAGC
TACCACTGTGTTGGAGATTTCTATAGACCACAGTGCATCCCTCAAATTGC
ACTATTGGTAATTCGAGTTATCATCGCCTTATACACCACTGCATCCATGC
TAGCTGATATGGTTGATTTCTTTGAAACAAAGAGTAACGGTGGCTGTTGG
TTTGTATTCTTCACATCGTGGAATTATCTGACGTGTGTATTTTACTTTAT
ACTCGTCACAATCGGCACAATTTCTTATTACTCCAAAAAGCGCCAAGGTT
GCGACCCCGACGTGCCAATGTCTTCAATGAATCCAAATCAATATGCGTCT
ACAACTGATATGCTGGAATCTGGCTCCCCCGATCTATCAACCGAATCGGA
AGACCTGGGAAATCGGTTGAGCTGTTACGATAAGATTATTTGGTTATTTT
TCAATATCAGTATTGCAGTTTGTACGTTGGTAGTTGCTTCGTATTGGATT
GTGCTTTTTGATGGTAGCCAGGATCTTGATTTCTTTAACATCGATCGACA
TGGTATCATTCTGGCGATGGTTTTGATCGATTTCTCATTACACCGTATTC
CATACAGAGTCTTACATTTCGTTTATCCGATGATTTTCTTCATCCTTTAC
TTCATTTTTCATGTTATTTACTCATTCGCCTCTGAGGATGTCATTTATTC
ACCGATTAACTGGCAAGATAATCCAACCAAAGCTGGTATCTTGTTTTTGG
TCATTATTGTTCTGTCAGGTGTCTTCCATTTCGTATTCTATTGGATCGAC
TATGGTAAAAAATTGTTAGGTGAAAGATGTTGCCAAACAAATACAATGGC
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068820-exon-scaffold_49-1491911889:911244..911613 | TCONS_00068820-exon-scaffold_49-1491911889:911244..911613 | Clytia hemisphaerica | exon |
| TCONS_00068820-exon-scaffold_49-1510915933:911244..911613 | TCONS_00068820-exon-scaffold_49-1510915933:911244..911613 | Clytia hemisphaerica | exon |
| TCONS_00068820-exon-scaffold_49-1575043694:911244..911613 | TCONS_00068820-exon-scaffold_49-1575043694:911244..911613 | Clytia hemisphaerica | exon |
| TCONS_00068820-exon-scaffold_49-1491911889:912008..913442 | TCONS_00068820-exon-scaffold_49-1491911889:912008..913442 | Clytia hemisphaerica | exon |
| TCONS_00068820-exon-scaffold_49-1510915933:912008..913442 | TCONS_00068820-exon-scaffold_49-1510915933:912008..913442 | Clytia hemisphaerica | exon |
| TCONS_00068820-exon-scaffold_49-1575043694:912008..913442 | TCONS_00068820-exon-scaffold_49-1575043694:912008..913442 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:911244..913442 + |
Blast
The following BLAST results are available for this feature:
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