TCONS_00068816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068816
Unique NameTCONS_00068816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068816 ID=TCONS_00068816|Name=TCONS_00068816|organism=Clytia hemisphaerica|type=transcript|length=1692bp
ATTCGTCTCGCCCATTCAGTGCATACTCTCTCAAAACCCTTCTTTTTAGG
ACTGAAAAAGCGagtcaaaaaattaaacttgTTTATTTCACTCCCTTGAT
GCTTGAAACTCAAGCTTGGGAAAAGCAAGCAGGCGACAGGACAGCATCAA
AAACTATTGTAAACGAGAAATTATACAGCTTTCCATCAAGATGATTTTAC
TTGAAATCAACAACACTATTGTAGAAGAAACTTTGAAGTCACGTATTTCT
CAAATTGCAGCAAATGGAAAAGCTGATGCAGTCGATATTAAAGTTGCTGa
CTTTGATGGTTGCATTTTTCACATTGGAAACCAAGACGAAAACAGAAATA
AAATTATTGTTAGCatctcattaaaattttaccCAGAACTACAGAAGCAT
GGCGCAGATGCTAAAATTAAAGGCGAATATGGAGACTTGATGATTACACC
AGAAAGCGGATATGACATTTCACTTCTTGTCAATTTGGAAGCTCTCCCTC
CTAACTCAGATGAGCTAATCAAGAAAATTGGTCTACTAAAGAGGAACTGT
TTCGCATCGGTCTTTGAACGTTATTTCGACTTCTTGGAACGTGAAGAAGA
CAGTAAAGAGAAAGCCATTATTAATTACCGTGACGACGAAACAATGTACG
TGGAAGCTAAAGCTGACCGTGTCACTGTGATCTTTTCCACCGTATTCAAA
GATGATGATGACGTAATCATTGGCAAAGTTTTCATGCagGAATTCCGTGA
AGGACGAAGAGCCAGCCAGACAGCGCCGCAAGTTTTGTTCAGTCACAAAG
AACCACCACGCGAATTGGAAGGAACCAACGCCGCTAGAGGAGACAATATC
GGATACATTACTTTCGTTTTGGAGAAGCGCCACACGAAAGCTGCTGCGCG
TGAAAACACTATCAATCTGATCCACACTTTCAGAAATTATTTACATTATC
ACATTAAATGCTCAAAGGCTTACTTACATTCCCGTATGCGTGCCAAGACT
TCCGATTTCATCAAAGTATTAAACCGTGCTCGACCAGAACCCAAGACCAC
CGAAAAGAAAACCATCACTGGAAAGACATTCACGAGGAACTGATTGTCAT
TTGGGTGTGGTTTTCCTTGAATTGTGGGTAATAATGGAGAGCAATCTGTC
AATCATGATGGGAAGGATTTCTCTTGCTGcatttttgtaaacaattttaa
attagAAAACTTTTATTCAATTTAAATTATCAGCTTTTTAAAGGACGTCT
TGATTTGTATGAAATTTCTCGCTCTTGATTTAACACCTATTATTTTCCTG
GATTCTAAGATGAACAATAGtgatttttttctaagaaatagtgaattttt
gataCCCTAGTTTCTTTTGATGAATATTTTTcgttttgtcaatatttttt
ttgcaattttttttctcgcccCGTCCaacttcaattttattaatttatat
tagaaaaaaatgcaattcaattttgtttttcgtTATTTGTTTATTAGTAA
CTAAATATGTCTTTCAAattgttcaaaaagaaaataattttagttaCTAT
GTTTTTGtacaaaataacatattttttttttccatttctcgTTACGTCTA
TTCCCCTAGGTGCCACATTTTTCATTTAGGTACGCCACAAAATTTAATTA
ATCAAATGTTTTTATGGTCTCCCAGAGTGTACTTGAATTTGG
Run BLAST on NCBI

transcript from alignment at scaffold_49:885645..906791+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068816 ID=TCONS_00068816|Name=TCONS_00068816|organism=Clytia hemisphaerica|type=transcript|length=21147bp|location=Sequence derived from alignment at scaffold_49:885645..906791+ (Clytia hemisphaerica)
ATTCGTCTCGCCCATTCAGTGCATACTCTCTCAAAACCCTTCTTTTTAGG
ACTGAAAAAGCGagtcaaaaaattaaacttgTTTATTTCACTCCCTTGAT
GCTTGAAACTCAAGCTTGGGAAAAGCAAGCAGGCGACAGGACAGCATCAA
AAACTATTGTAAACGAGAAATTATACAGCTTTCCATCAAGATGATTTTAC
TTGAAATCAACAACACTATTGTAGAAGAAACTTTGAAGTCACGTATTTCT
CAAATTGCAGCAAAGTAAGTTCCTAGGTTTGCTTTGAATTGCTCCGTATT
TTAACCAAGGCAAGACAGAGGTAGAGGGCTAATAAGGCCGttcataaaaa
attgtttggttcccgtcacccGACCGATCGTGATTTCTACTGAAAAGTCG
GAGAGTCGGAGAGTCGGAAACCATTTTTCCTGACATCTGAAACTCCACCA
Tcaccagtcgggtgtttaagataaaaactgcaattattgctcttttcgga
aattattgccgaaaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTCTGGCTCTGAATGTGTCCACAAAGGTGGAAGTTCAGATCATCAT
GATATGATCTGACTCTGATGTCTGATGATCTATGATTCTGAATTATTTTC
GCCGCGATTTGTTTGTTTACAGATTTCACTTTTTTGTGGAGCAATCCTTT
TGGCGGGAAATTCTTATTTGGGTGGCATCTTAATTTTCACAGATTTCACA
GGATTTCAGTATTCTTATACTTATCCACaagaatttttaaacatttgttt
ttgaatttgagtGTATGATGGTAATGGAAGCAAAACATTTATGAATtcag
aaaattggatttttcagCTGAAAGGGCGTTTCTTGGAAGGGTGGAGATGA
ACATTCGATTTAGTTGTTTTGAGTGATATCTATTAGAGCAAATATTCGTC
TCGCCCATTCAGTGCATACTCTCTCAAAACCCTTCTTTTTAGGACTGAAA
AAGCGagtcaaaaaattaaacttgTTTATTTCACTCCCTTGAAATTCAAG
CTTGGGAAAAGCAAGCAGGCGACAGGACAGCATCAAAAACTATTGTAAAA
GAGAAATTATACAGCTTTCCATCAAGATGATTTTACTTGAAATCAACAAC
ACTATTGTAGAAGAAACTTTGAAGTCACGTATTTCTCAAATTGCAGCAAA
GTAAGTTCCTAGGTTTGCTTTGAATTGCTCCGTATTTTAACCAAGGCAAG
ACAGAGGTAGAGGGCTAATAAGGCCGttcataaaaaattgtttggttccc
gtcacccGACCGATCGTGATTTCTACTGAAAAGTCGGAGAGTCGGAGAGT
CGGAAACCATTTTTCCTGACATCTGAAACTCCACCATcaccagtcgggtg
tttaagataaaaactgcaattattgctcttttcggaaattattgccgaaa
acagcaattttttcaacgatgaaatgatgaatcagcaaaatgtgttgtcc
ttttaagggcaaagatgtcagtggtgtttgaaaatagtaaaattgcatcA
AGAAAAACTGTccgggaaatcctctcaattgcacgcttatgttccgaggg
cgtaagcgcgtaattgcatggttataatttacgcccgctcaCGCctcggt
tgaaattgcttagggatttcaaggggttcagaattctctaattcgggcga
aggcatggtttaacgggcaatccatttttacgaaatcttcttctacgata
aattttgagtaaaactgccctaggcttttgaaattcaacagagctttcgg
aaggaattgcgtATCAGAATAAtaacgcttaccgcccgtttcagaacaat
tttgattagcgtgtaattacacgcttaaaaattctgccattttgataacc
atgcaattgcgcgcttacggcctcggaacataagcgtgcaattgagagga
tttcccagactgaaaaaggtttttcgaatttttaaaagtgattttttcaa
tttttcgttgctcaataacatgaaaaattctaaaataatatgttaaaaga
tcctgcatcgatgccgaaacacagccagaaagagataacaaaaccccgtt
gtaaatttgtttacatatgactccattttgctatctgcattccaacaaaa
accagttgaaaacaaaactaaacgaggcacagtgggcagctacttatcgc
gagggtgtcaaataccatgTGTTCANTCGTTTACCACCCTTTTCTTCTAA
GGAAAATTCTACCTTCTTGGACTGTTTCgttcaaacagaaaatatttttc
gcccgaccgaccgaccaacccactttttgatgttttgaatgACGGGAACC
TAGGTATTTTTTACGAATGGCCTAATAaacctaacttttatttttttgtt
ttagctAGCTAGCTTTTTAGTTTGTTTAGTCTGACAGTAATAGAGTTTGA
CCTATTAATAAATTCTGCACCAACTTGCGAGCTATGGTCATAAGCAGAAT
TTTATAAGGACTACCGTAGAAATGTCTAATAATCGACATACGCCTTCTAa
agtcgacaccggatctgtaaaataatcaaaacaaaccttgaatgaaattc
ttggtatcattcttattaaacaagttcatccatcaaactagaagttcaat
aaacattgcaatcctttcaattaaaaaaaacagccaaattataagcagtt
ttacacatcacacgaaacgcatgcaaacttcctcgtaactttcttgtGTC
CATCAtttaaattttacaactttattacgcttcaagtctcgtgataaaaa
taattcgcgcgcttagcatggtttccccttccttatttataaaaaacaca
GTTCTAGGCGCTAAGAGGGCGCACAccgtgatggccagtatggcgttcac
attaaattcaaaaggaaaccgggttctttttattattttcgtttcacagt
aaaaaggtctactaaaaaattctttgcgtgcaaaatgttgttttgatttg
gatatcttccttgaatgaaagcatgctaattagtttttagtgactacatc
gttaaagttttcttttggaaaaaaaacccacttcacgtttcttacatttc
aacaatctgtgacgtgatagggagagtacaatttagtgattgattgataa
ctttggtatgtatgtatttgtttatgtttgattctttatttcgaagacca
gcctacagctatgtcgaaataacaaggcgcatgtcgatattaaacgactc
tacggtaacATTCTCAGAGCCTCTCACAATGAGACCTTCTtcatgtggaa
aacttttggtgaaATGGGCTATtcctaaaaaaattctcataacCACAAGG
ATTATTGTAAATTGGGAGAGTAGTATCCAAATtaacagtgcgtcacaaac
agccatataaacaaaactcaacattctcacaaaagttgtatttttgattt
cccaaaaattcgtctaaagcgttcacttccacaataatttatgtaattgc
aatttcgttCAGTTCACAGTCGGTTTCAATATATACATGtgtttttagtc
acgtgaccgaagtgcctactaaaacaatccgggggtaagtggcaaagcaa
cacagcagattattcgtaaagtaaagaaatatcttttggcattgacaatc
aaatataatatattatattatatttccttaaattcaaaaatcaaaaattc
atttttcattcgcgaaaaataaaaataatattacatactaagacgccccc
gtcttttactcttgtttaatttccaatctcggaacgtgcaaaacgcccgt
ccgcccaatatccacccaatcagcttaaatttgCTTTCATAGTCCTTtgg
ctttcaaaaaatagtatttaaaaattatgaatttataataattacaaaaa
acaaaaagtttgatacttcattatggaaatattcaataaattcctagttt
caatttcagtgggcgtttttctacGGCTTcctttatcgcgcaatttttgc
gtcacacaaactttcttggccgctcgtaataattacgcatccaaatttgg
ttctccattgtcaagtcaggatcaatggtgacgtcacctaagcataaaaa
ataaAGGATTTCGTTAGTTAGTGCATAtgttaatttgcgagatattctat
tcacCGCGCGAGCGCACATTTCGTAGACTAGTcagaatactttcttttac
tcacgggattgatggtaactcttcatcttcgttatttttaaaatgaagca
caaccgaaaaaaaacgaaacttcagaaagttgcgtatttccagtgagtaa
acgattctgacaattaccaaaactgatgatgatgattttttttcggtcag
gcaaatgtctcgtattgggagttctagtcttgacccctaagcctacacga
gattgaagcgtttgggttaacgagacaaaactccaaaatagctggtgttt
tgaagcgcttccgtgcgatcgaaatatcgctgtttgtgacgcactgattA
AGAGATTCAGGTATGCTAAATAGGAGAGCAGACACTTTGACCTAAATTCT
TTCAGGGATTGCTTCAATTCGCATTCGGAGAACTAaagtctttattgttt
ccatttcgAGTAGTTGAAGTTTATTTACTATACCTAGTAAATGGGACTTA
AGTCAAACTTTAATCATAAAAAATTGTTAGGTAAAAATCACTATTTCATA
TTCAAGTTTATAAATCTGTCGATAGTCAAATTGTTATCTGACAACACCTT
CTCTAGAAGAAGGGAGTTGTTCTTCTGATTCTATGATGATATTTATCGGA
ATTAAACATTAACTGTTTAATACCACAATCTACAGACATTTGAACGAAAT
GTCCTGCATAATTACTTTGCTGTTTTCAAATGAAACTACTGACGTCTTCA
GTATGGCAAATAGAATGCAGCTTAgtgttattaatttttaaacGAAAGTT
TCCTTCTTCAGTATCGACTCAACTGAAACCATGTTGTATCATTTTGCTAA
GTAGACTTCTGTACGTTGAGTCAAGCTTATCAAATTGCGCTGCGGTCAGA
TTCCAATTCTGACAAGAGTACGTTAGTCTACTTCTCACAAAGAGGTTAAA
AAATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNtactcagttcattgtacttaacaacata
tccaaaaatgaaaaaaatctaagtttcaaactattggacctgccccgctc
ttaaaaaaactggctcttaactCTTGTAGATAGATTAATTCCATGATTCT
GAAGGAGGTTTGTCATATGTGCGAATTTTCCAAGTGCCATCTGAATGCGA
TAGTTGATTTCAATGTCTCCGGTATTAGGCGCATTTGGAGAGATGTACAA
ACCAAGATACTTAAATTCACCTGAATTTTTCTACTGGACATTGCGAATAT
TGATGATGCTATCAGGATAGTTTGTCTCGAGGTAGCAGTGATTGAGAATC
ATTGTCttggttttggttttgttgattCAAAGACCAAATTTAACGAATAC
GTGCAGTGTTGACGCTGATTGTAGAGATGAAAGATCAGTCAAGAAAAGTA
TCAGGTCATCTGCATACCCACACCATGGGAGTGATGATTCACCTGATAGC
TTCTCGTTCTCATTTCTCATTCAAATTCGTTCTGCTCTAGAGATTGATCT
TGGATTGATTCAATACTTATGTTTAAAGAAACTAACCTAGTCAGTAAAGT
tacattttttgataaaaactcgCATGATGTATTCAATGTAGAGGTTGAAC
AACAGAAGACTCTCAGGTCCTCCTTGACGAACACCTGATGAAACATGGAA
TGAAGTGTTCGCTTCATGGAAGGTCAAGGATGTTTGACTGTATAACCTTT
CTAAGATATCAAATAGTTTTAGGTCAGCTTTATCAGGAAATCGAATTCTG
ATTGATTTAAATAGCCAGTCTCTGGGTGTATGGTCAAATACAGCCGTTAA
ATAAACAAACAGTAAGTATAGTGGTTGCGTTTTTCGATTGGATATTTGTT
GTGTCCTTTCGATAGTGAAAATCCCATCTGTTGTacctttgttttttcta
aatccGTTTTGTTCATCTGTGATTTGTGCCTCGTACCACGGTCTGATTCG
ATCCAGTATGATATTTATCATCAATTTAAATTTACATACAGTTGAGCCAA
TGCTGATTCCCGATAATTGGTTGGGTCAGATTTAGAACCTTTCCCTTTCC
AAAGCGTTTTCAATCTCAAGTTTCCCCAGGCGCTTGGTAGATTTTCTGCC
AATTTATGGATAACTTGGAGCATAATTGGGTGCTTGCATTTTTTGAGGAT
TTCAGGGTCAATGTCATTGCTAGCTTTGTCTGATTTTAGTTGATGAAGGT
GCTTTTGAATTTCCTCGATGGACAGGGTACCAGTGTCTATAGGGATGTTG
GTGGAAATGTTACGAAGCTCATTTATAAAATCTGGCACGTTAGTCAAGTT
CTTCAGGGATTATGAGATAATCACGGCTAGGATTTAAATGTTTATGGAAG
TGTTTTAGAAGCTTTTCTGGGGGGCATTTTGCAGTTGTGCTTCTAAGGGT
TGTCTCTTGGTTTTTAGCCCTCAAAAAGAGTTTGTCGAGTTCTCTATTGA
TGACAAATTGATTGAATAGTCCCTTACTATTGTTACGAAGAGTTAATTCA
TCATTCAATCCTTACAGACGTTTCAATTCCTCATCGCCATGCCATGGTTA
GTATAATCTTGATCTCTCAATTTTGGGAATAGATTCTTCTGCAGATGAAT
TTATATACGTAATAAACGATTCATTGATGATAGAGTTATTATTTTGAAGT
AAATCGATTTGTTCCAGTTTAGTAACGGTATTTTCGAGAAATGCGTTATA
AATTTGTGGATCCTGTAGACACTTCAAGTTCAGCTTGTTGCTTTTCGGTG
TCCTATTTCTTGAAATGTATCGACCAATTTTTGAGCTGGGTGTACAGATG
TCTGCTATAAGTAACCGATAGTCAGAGTCAAAGTCAAAACTGTTGTACAC
ACAACAGTTATTGGCATATTGGCGAAGCCAGCTACAACATAATACGAAAT
CGTATACTTTCTTGGTAACTCCATCTGGCGAATGCCAGGTGATTTGACGA
CACTTTTTGTGGGCAAACCAAGTGTTCAGAACAGATAGTCGATTACGGTT
GAAAAATTCATGAAAGCGAAGACCATTATTATTTACTATAAGGTCATCGA
TCAGGGTGTTTTCACGAAAGGAAGAATTAAAATCACCCAAACAGATTACT
TTTCGTGTCTTTTCACAGATGAATTGTTTGTTTAGGTTGGCGTAGAAGAG
GTTTTTGGATGAGGTCCTATTAAATGATACACTACTGTAAATACAGTAAA
GACTGAAAACAAacgcaaaaacaaaacaaacaactaACTGTATTTTGGCA
CTTACACTCTGAGTATGTAATCCTTGTAAAATTCCTCTTCTACCGGTACC
TAGCAAGGCTCACCTCTGTATCGTCATATTTCTGCCAGactaccataagt
tggtctaatatcctattttcaaatacattttaTCTTCATGCAACCCTATT
TATGTTTCTTTCTGTTTTTAGTGGAAAAGCTGATGCAGTCGATATTAAAG
TTGCTGGTATGTATGTTTTGTTTTATTGATTGTCACCTTTATAcagcccc
ttctcacagacccggtaggatattttcagtcagtggggataaaaatatca
gACTCGATGGTATAGAtattccatattttttatggctgggtttcaattct
tttgttttcaagtcagaaaattcattaGGGATGGGAAAAATGGTAAGTAT
TTTGCAgagaggattggtttatttgattatcttCAGTGGgcacaaaaatt
ttgaaggatAATTATCCAGCGGGGACGAGGACGGTATTTTAGCCaatctt
tccagtgggaaggggttccagtgggtctgtgagaaaggggtggcTTTATA
TTTCTTTATATTAGAAATCTTTTCTGTCTCAGTTCAGCTGATTATAAAGA
TGTTCTTTTGTTAGTCTTTTTTCGAtgaattatttattttcaattttcag
actTTGATGGTTGCATTTTTCACATCGGAAACCACNCTTTATATTAGAAA
TCTTTTCTGTCTCAGTTCAGCTGATTATAAAGATGTTCTTTTGTTAGTCT
TTTTTCGATGAATTAtttatcttcaattttcagaCTTTGATGGTTGCATT
TTTCACATTGGAAACCAAGACGAAAACAGAAATAAAATTATTGTAAGTGA
GAATtgtaaattttccatttttatggAGTCCTCATGAGTAAAAATTTTAA
CCAGCAACAGTTTTTGCTATTGTTTAGCTCAGCCATCTTCTACATCCTAA
GCAATAGATAAATTCTTGTTTCATTTGAGAAATAAGTGACCAATAATATC
AAATAATAGATTTTTAACCTTTGTTGACCTTTGTATATTTCTATAATATT
TCTATATTATTTACAGGTTAGCatctcattaaaattttaccCAGAACTAC
AGAAGCATGGCGCAGATGCTGTAAGTGATTACttttacatacatacatac
atacatacatacatacatacatacatNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTGTTAATCCAGTATCCTCAAGTATGAC
ACTTTTCAAGGTAGTGAAAGGTCTTCCAGTCTTTCTCTTCGAGTCGGGTG
ACCACATCAATAGCTGCGAGGCAGGCTCTTCTCGACGTGCTACGTGACCG
GCGAGAGCAAGTCGACGTTTTCGTATTGTTGCAGAGATTGGAGGAATGTT
TCCATAAAGGACTTTGTTAGCCATACGTGTCGTTGGAGGTACGTTGCAGA
CAACTCTCAgcatttttgtgtattttccgTCAAGGGATTTTGCAAGGGTC
TTTGTCATGGTCCAAGAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGTCAGT
AGACGACTTACTTTCGAATAATTTGAGCGTGTCGTTGATTCTTTTCTCTT
CAAGATCATCGTGAgttgttttaatattttgttgttTGGCTTGGATGCTT
TGGACTGGTGCAGTAATCGATTCTTTCTGACATCNCAGGGCGTTTACTGC
GCCCCAAGCTTTTCCAATCCGTACATTCATGTCGTTAGCAGTGTTTGTCA
GACCACCCAGGTAGGTAAAATCATCGAATTTTTCAACGATACTATCGTTT
GAAGTTTTTAAAGGGGTAGAATCATTCGAGTTCACAAGCATATACTTTGT
TTTCTTTGGATTCAGATAAAGACCAACCCANTTCTTGGTTAGATACTTTC
AAAAATTCTGAGTAGTTTTTTGACATATCAGGAAGAGCATTGAACTTAGC
AGCAATGTTTGCACCGATCCTAGAGCCAAGATCTATGTCATTTCGTATGG
CTTGCCAATTAAGACGTTTTGACCGGTTAGGCTTTGGCTCATTTGAATCA
TAGTCGATACAATGCGATGATCACTTCCAATTGGATTGGAAGATTACTTT
TAATGGGGGATAATTTTGTCGAATCATCTCACATTTATGTCTTTTCAAGT
TTATTGTTCtgttttaatatatttttcttcTCATTGATTTCAGAAAATTA
AAGGCGAATATGGAGACTTGATGATTACACCAGAAAGCGGATATGACATT
TCACTTCTTGTCAATTTGGAAGCTCTCCCTCCTAACTCAGGTATCTTTTA
CAGGAAAATTGATGAACTTCTTACTACTTCTTGTTATGACTGAGGataat
ttttataaatatacttCATTCTTCATTCTATTTTCCTTTCATAAAATTTT
TCACCAGCATATTTTATTCTACCCAATGGTGTGGATTTTTATCATTGCTA
GTTTTAGATAGATaatgataattttgaaaaaatattttagctgaaaaagg
GCCGGCCGGGTAAGGGTGCTTTCAGACAAAATCTGTACCAAATCGAAAGT
GAATTACATTCTTTATTTTgcaagaattaattttggctaatgagcaaaaa
atgttatttttcggAAAGTAATTTTTGgctaatttagaaaatttttgaga
caATTTGccaaattggccaaaatttcctTTAAATGTTTAAATTCATTCAA
AGGTAGTACTGATGAGTCTGAAATAACCCCAAATCTCCTAAGTGGATATA
GTatgattgaaatttttattttcaatgtttCAATTCAATAGNGTCTGAAA
TAACCCCAAATCTCCTAAGAGGATATAGTatgattgaaatttttattatc
AATGTTTCAATTCAATAGATGAGCTAATCAAGAAAATTGGTCTACTAAAG
AGGAACTGTTTCGCATCGGTCTTTGAACGTTATTTCGACTTCTTGGAACG
TGAAGAAGACAGTAAAGAGAAAGCCATTATTAATTACCGTGACGACGAAA
CAATGTACGTGGAAGCTAAAGCTGACCGTGTCACTGTGATCTTTTCCACC
GTATTCAAAGATGATGATGACGTAATCATTGGCAAAGTTTTCATGCaggt
atgaaaatatttttttgaatcacaattgttttgcttgtccattcttttga
attttctttgattgtttgcttgtatttcagctgaccattttttgttttac
atAGGAACTTATTATTCATAGTTTCAGTGCAAGAGGCTCAGTAATTGTTC
GAGAGGTGAAATAGCCCAACATTTATCAGGGGAACAAAAAACTGTTCGAA
TTATGTGTGTAAGAGTCGTTCACGTACACCATTTTGTCATCATTTCGATG
TACCTCTCTCTGTGAAGATTCTGTGGAACTAATATGAATGCGATTTTTAG
TTTGTAAGGTGCGTCTTTTTTAATTCTCAACCTTGTTTTGCAATAGGAAT
TCCGTGAAGGACGAAGAGCCAGCCAGACAGCGCCGCAAGTTTTGTTCAGT
CACAAAGAACCACCACGCGAATTGGAAGGAACCAACGCCGCTAGAGGAGA
CAATATCGGATACATTACTTTCGGTAAGCTTCCTATTACTTCACACATGC
AATTCTATCATAATATAAAAGCTTCAAAGACATGGTTTTTAGAGAAGATT
AGGAAGGATTTCATCTTCAAgcgaaaataaagaaatgtagtgtttccgga
aaccggccgcgTATTTTTTTTGACCCGGCAgctgtaaatcaagttttgtt
cgtcAGTAGTTGATATATTAGTATTCGGGGCTTACTttatactgtttgta
cataaaagttatctttaaagttcaatgatcttaagtaatcaaaaatagca
acaaaaaaaatttttcggccgGCCCcatgaaagcttttttccttcacccg
cattccggaaacactacattttttggacctaccccggtggggtggaggtc
ctataaattcacctctgtccgtccgtccgtccgttcgttaccagcttttc
tcgagattgaatcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNcgattttcgaaaaaaaaaattttggg
gcaaatttgggccaaaaaacggctaaaaaacgggttttttggactttgtg
aaaaattggatcatttattttttctgattttttgcatggaagtagggtac
catcataggtaaaagatggctcatgcagatttttgcaaaaaaatttattt
ggcttaaaaaacgcatgtttatctataagaattactattaataagcatac
atcaatgttcttagtcaaattactcacNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgattggctctttcattc
tttaagactttttgcacaaagatgcataactataaaccctcgaatgtgac
ggagcccaattttcgaaaaaaaatgtttttggacaaatttgggNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNttgttggctcaaaaaacgcatgtttatctataagaatc
actattaataagcatacattaatgttcttagtcaaattactcaatttttt
tattagatagatgtttttcttgctcacgagggcttacatttgaagcatat
gtgtgtttagaaatgaaattttggttccttggcgtgtttttatagaaaaa
actggccaaattcgatatttttttataagcacattatcaattacttaggt
attagcttttctcgagattggctctttcattcNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNataac
tataaaccctcgaatgtgactgagcccgattttcgaaaaaaaatgttttt
gggcaaatttgggccaaaaaacggctaaaaaaagggttttttggacttga
aatattggatcgttgtttttttctaattttttgcatgaaagtaggtaaaa
gattggtcaagcagatttttgcaaaaaaattttcagctcaaaaaacgcat
ctttatccataagaatcactattaataagcatacatcgatgttcttagcc
aaattactcaattttttgatgagatagatgtctttttatgttcacgaagt
cttgaatatgaaagaatatttcaagagcatgaaattttggtttctaaacg
ttttttttataagaaacaaacgactaattttaataaatcgtcactatttg
tgttctgaatgattgtttaacgttcatgctcacgtagatatcaattatat
acgtcttaaatgcataaccaggtaggtccataaaagtatcacttgtttat
ttcCGCctcatttttaatctttttttcagtacattgaaaattctcaaaaa
tcgttTGCCTAAGGTTATGGCTGTGGTATTTATTGCTTTTAGCTATCAAG
AAATACCCTGACATATTTTGATCATAATGTGTATGTTAATTAACCCcaaa
caatttaattttctcaTATATTTCCCTATATAGTTTTGGAGAAGCGCCAC
ACGAAAGCTGCTGCGCGTGAAAACACTATCAATCTGATCCACACTTTCAG
AAATTATTTACATTATCACATTAAATGCTCAAAGGTATTGCTTTTGGTAT
AAATGACCTTACTGAAATTGAAGTAGATTTGACGGGTTAATGACCCGCTA
AATggctgattttaaaatacccgTCAAAGTTTTTCCATTTAGAATATACA
TTGGAGTATCttcaactcgaacctctataaatcgaatgtctccttaaatc
GAACAGGTTTTATGGTCCTTTCAGATAACAATGCCTTAAAAAACccactc
tataactcgaaatttccttactTCAAACAAATTTGTCTTTAAATTTTCTG
GAGAACCCACTGTTTAACTAAAAACGGTAATTGTCACGGGTCAGCCTTTT
GTTAATATatctaacaaaatttaaaagagtatatcctaaaaccaaatcgg
gaaatcaaactggaaagatcgggaaatcgaaccCGACTATCGCGATTGAT
Cggatttacgcacaattacaaatgaaaaacactgattttaaaaaattcct
taaCCGGAGTTTAAGTAGAATGAAGTTAATcattttcgaaatatttcaat
gtttatttttacaaaaattagtagtatccaaaccCAATTTGACTTTTTCT
TCCCGTGCTTAATTAAACCCCCGTGTTTTAATTTCCAAATGGTGTAATAA
TTTCTACAACATTTTCTACAGGCTTACTTACATTCCCGTATGCGTGCCAA
GACTTCCGATTTCATCAAAGTATTAAACCGTGCTCGACCAGAACCCAAGA
CCACCGAAAAGAAAACCATCACGTAAGTTGTTAAAATCGTACTACTCTTG
TGTGCTTGATTGTAGGGGGTGGAATAAAGGCcagggcaaaccgatccaac
atttcatccaacatgccatttttctgatgttggatgaaatgttggaccgg
tttgcgtcaattcaattttttagaaaaaaatgaaaattcaaaaaaagaag
aaaaaaatcgtgttggacggtgttggatttggatgaagtttgatcgccat
caaacatttcatccaacatttgcggcaagatcaaagaagctctctcattg
aattgtgtaatttttcgtgttggattggtttggtttttctttaatttttg
aattttcaattttttccaagtcatgttggatgaaatgttggatcggtttg
ccccagccttgattttcgcttcatccaacgcaagtttttccatcaaacat
ttcatccaacattggaaaatcatgttggatgaaatgttagACTGGTTTGC
CCTGCCCCTAAGCAGGGGGATGGGTACTCCAGATAAAAATCATAATCAAG
TGCTATtggtttttggccaattttggcactttgtagcataaaggtcataa
aattggggggggggttattATGAAGTGATatgggggtgattttttccaaa
aatagcaaaataactccccctacaattaagcacacaagagtATTTGTTAT
TTATTTCCTTAGATCATTTTAAGAATAGTTCATTCTGTacactttttaac
tttttaacgaAATTCATCGTCAAGATCTGTTGAAAATACTGGAAAGATTC
TTTCATAAGCAGGTTTCCGTCTTACCCATCTACCTCCAGGGTGTTTAAAT
GCTCTGGGGTTCAAATAATGTACAGGCTAGACCTCTATGATACATTTAGG
GATTTTTCacgtaaaagattttttttttcgactttgCATGACTAACTCcg
agcatggaggtataaagaaacaggagaagtatgctattgtaaccatgctc
gccctacgattagaaaaattacgaggtatgcatgctcataatctcatata
tcgtgcatttttaatgagctcttttgttgataggtgaaatcttattggct
aacttaagtgttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNcctagaatttcttttgatttattacataaaagaaatcaaaagacttt
aacgaccaattaccgacaaattcatctcctgtctttctttatacctctat
gctcCGAGTGTCTCCGGATCTTTTAAAATGCTCTGACGTTCGATTTTTCT
TTACGTTCCATTTCTATTTTTAGTGGAAAGACATTCACGAGGAACTGATT
GTCATTTGGGTGTGGTTTTCCTTGAATTGTGGGTAATAATGGAGAGCAAT
CTGTCAATCATGATGGGAAGGATTTCTCTTGCTGcatttttgtaaacaat
tttaaattagAAAACTTTTATTCAATTTAAATTATCAGCTTTTTAAAGGA
CGTCTTGATTTGTATGAAATTTCTCGCTCTTGATTTAACACCTATTATTT
TCCTGGATTCTAAGATGAACAATAGtgatttttttctaagaaatagtgaa
tttttgataCCCTAGTTTCTTTTGATGAATATTTTTcgttttgtcaatat
tttttttgcaattttttttctcgcccCGTCCaacttcaattttattaatt
tatattagaaaaaaatgcaattcaattttgtttttcgtTATTTGTTTATT
AGTAACTAAATATGTCTTTCAAattgttcaaaaagaaaataattttagtt
aCTATGTTTTTGtacaaaataacatattttttttttccatttctcgTTAC
GTCTATTCCCCTAGGTGCCACATTTTTCATTTAGGTACGCCACAAAATTT
AATTAATCAAATGTTTTTATGGTCTCCCAGAGTGTACTTGAATTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042906XLOC_042906Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068816-exon-scaffold_49-1491911889:885645..885908TCONS_00068816-exon-scaffold_49-1491911889:885645..885908Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1510915933:885645..885908TCONS_00068816-exon-scaffold_49-1510915933:885645..885908Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1575043694:885645..885908TCONS_00068816-exon-scaffold_49-1575043694:885645..885908Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1491911889:896116..896150TCONS_00068816-exon-scaffold_49-1491911889:896116..896150Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1510915933:896116..896150TCONS_00068816-exon-scaffold_49-1510915933:896116..896150Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1575043694:896116..896150TCONS_00068816-exon-scaffold_49-1575043694:896116..896150Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1491911889:896728..896786TCONS_00068816-exon-scaffold_49-1491911889:896728..896786Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1510915933:896728..896786TCONS_00068816-exon-scaffold_49-1510915933:896728..896786Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1575043694:896728..896786TCONS_00068816-exon-scaffold_49-1575043694:896728..896786Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1491911889:897011..897064TCONS_00068816-exon-scaffold_49-1491911889:897011..897064Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1510915933:897011..897064TCONS_00068816-exon-scaffold_49-1510915933:897011..897064Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1575043694:897011..897064TCONS_00068816-exon-scaffold_49-1575043694:897011..897064Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1491911889:899038..899134TCONS_00068816-exon-scaffold_49-1491911889:899038..899134Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1510915933:899038..899134TCONS_00068816-exon-scaffold_49-1510915933:899038..899134Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1575043694:899038..899134TCONS_00068816-exon-scaffold_49-1575043694:899038..899134Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1491911889:899713..899942TCONS_00068816-exon-scaffold_49-1491911889:899713..899942Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1510915933:899713..899942TCONS_00068816-exon-scaffold_49-1510915933:899713..899942Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1575043694:899713..899942TCONS_00068816-exon-scaffold_49-1575043694:899713..899942Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1491911889:900291..900417TCONS_00068816-exon-scaffold_49-1491911889:900291..900417Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1510915933:900291..900417TCONS_00068816-exon-scaffold_49-1510915933:900291..900417Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1575043694:900291..900417TCONS_00068816-exon-scaffold_49-1575043694:900291..900417Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1491911889:903128..903228TCONS_00068816-exon-scaffold_49-1491911889:903128..903228Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1510915933:903128..903228TCONS_00068816-exon-scaffold_49-1510915933:903128..903228Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1575043694:903128..903228TCONS_00068816-exon-scaffold_49-1575043694:903128..903228Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1491911889:903866..903966TCONS_00068816-exon-scaffold_49-1491911889:903866..903966Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1510915933:903866..903966TCONS_00068816-exon-scaffold_49-1510915933:903866..903966Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1575043694:903866..903966TCONS_00068816-exon-scaffold_49-1575043694:903866..903966Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1491911889:906168..906791TCONS_00068816-exon-scaffold_49-1491911889:906168..906791Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1510915933:906168..906791TCONS_00068816-exon-scaffold_49-1510915933:906168..906791Clytia hemisphaericaexon
TCONS_00068816-exon-scaffold_49-1575043694:906168..906791TCONS_00068816-exon-scaffold_49-1575043694:906168..906791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:885645..906791 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.117	3.467	8.05218	7.89331	14.4549	0.00663141	18.3174	12.8776	0.00283932	3.72636	3.61822	0.00979358	0.00489587	4.90389	0.000293381	0.000355632	0.000492883	0.000379349	0.00063542	0.000279198	0.000572059	0.00136612	0.00203469	0.000905936	7.65328	20.7408	4.86549	0.001232	3.94015	7.93605
Blast
[Close]
BLAST of TCONS_00068816 vs. Swiss-Prot (Human)
Match: ARPC2 (Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1)

HSP 1 Score: 417.157 bits (1071), Expect = 3.548e-142
Identity = 191/283 (67.49%), Postives = 236/283 (83.39%), Query Frame = 2 
Query:  191 MILLEINNTIVEETLKSRISQIAANGKADAVDIKVADFDGCIFHIGNQDENRNKIIVSISLKFYPELQKHGADAKIKGEYGDLMITPESGYDISLLVNLEALPPNSDELIKKIGLLKRNCFASVFERYFDFLEREEDSKEKAIINYRDDETMYVEAKADRVTVIFSTVFKDDDDVIIGKVFMQEFREGRRASQTAPQVLFSHKEPPRELEGTNAARGDNIGYITFVLEKRHTKAAARENTINLIHTFRNYLHYHIKCSKAYLHSRMRAKTSDFIKVLNRARPE 1039
            MILLE+NN I+EETL  +    AA  K +AV++  ADFDG ++HI N + ++ K++VSISLKFY ELQ HGAD  +K  YG  ++ PESGY++SLL +LE LP + D ++ + G+LKRNCFASVFE+YF F E  ++ + +A+I+YRDDETMYVE+K DRVTV+FSTVFKDDDDV+IGKVFMQEF+EGRRAS TAPQVLFSH+EPP EL+ T+AA GDNIGYITFVL  RHT A+AR+NTINLIHTFR+YLHYHIKCSKAY+H+RMRAKTSDF+KVLNRARP+
Sbjct:    1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKFYKELQAHGADELLKRVYGSFLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPD 283
The following BLAST results are available for this feature:
BLAST of TCONS_00068816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARPC23.548e-14267.49Actin-related protein 2/3 complex subunit 2 OS=Hom... [more]
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