TCONS_00068802 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068802
Unique NameTCONS_00068802
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1668

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068802 ID=TCONS_00068802|Name=TCONS_00068802|organism=Clytia hemisphaerica|type=transcript|length=1668bp
TTTTTGcatgttattttctttttaatgaaagtaaatctttttaatttatt
caGTAGCCATGAAATTATTCAAGCAAGGAGCAGAAGCACGCCTTTACAAA
GCTGACTTTTTGGGTAAGAAAGTCATTGTCAAAGAACGTTTTCAAAAGAC
ATATCGACATCCACAATTAGATTTGAAGCTAACTCAAAAAAGAacccttc
aggaagctagagcAATATTACGATGCAGAAAAGCNcaggcgttctctaat
tctccattcggcgtccggtcattttgaatgaaaacaaaacttaaaaaggg
cgcgctatcagtgaaagttatcaaaacaaatttgttgtcaaagagattta
acagtaagggAAAATACAGCTAGAATGCTCTTCACTTCATCCATAACATA
TTACAGAAATACATTGAAGAGCCTGGGACAATATACAGCCTTGGTGGACA
CCAACATTGACTGCAAACTATTCATTTAATTTCCCTACAATTTGAAGAGC
ACATTCAGTTTGGTCATACATATTCTCTATGATGTTCACAATATTTCGAT
TGACACCAATTGATCTTAGTATTTTCCAAAATGCTTTCCTCCAGACTGTA
TCGAAAGCAGCTTTGAAGTCTATGAAGTGaaaatttaaaggctttttcaA
TCAACTGCCTAACAATGAAAACAACTGACATATAGGCAGAAATTACAGAG
TCAAACACTACTTCTATAGGGTTTGTTAAAATCAGGTAAATTCAATTAGC
ATTTATCCTTTTTTGcatgttattttctttttaatgaaagtaaatctttt
taatttattcaGTAGCCATGAAATTATTCAAGCAAGGAGCAGAAGCACGC
CTTTACAAAGCTGACTTTTTGGGTAAGAAAGTCATTGTCAAAGAACGTTT
TCAAAAGACATATCGACATCCACAATTAGATTTGAAGCTAACTCAAAAAA
GAacccttcaggaagctagagcAATATTACGATGCAGAAAAGCTGGAATA
AGTACACCTTTGGTGTATTTCATTGaccataaaaaacatcaaatttttat
gGAGGAAATTCTTGACAGTTTGACACTCCGTGAAAGAATAGACACACTTT
TAAAGCTTAACACAGATGAAGCTAAATCACAACTTGTGTCAATGGCAAAA
GCAATAGGAAAGATGATTGCTCATATTCACTCAGTTGACATTATCCATGG
AGATCTTACGACATCCAATATCCTTGTTACTTCCAAGAATGATAAAGAAG
ATTATGTTCTTATTGACTTTGGATTAAGTAGTGTTTCCAAATTTTCTGAA
GATATGGGTGTTGATCTTTATGTACTGGAAAGAGCATTTTTAAGCACACA
TCCAAACACAGAATGGCTCTTTGCTGAAATCTTAGACAGTTACTTTAAAT
GTATTACTGACCCGAAAAGAAACAAAGAGATCATGGAAAAATTAGAAGAA
ATTAGAATGCGCGGCCGAAAACGAGTAATGATtggataagttttgatata
ataGTTTTTTTCTGCATTTTGTATATTCATAAGCATCAGAAGATCATTTC
ATTATTGTTTGTAATGTGAATGTGTTTAtcattttcaacctttttctttt
caatttgtaAAACATTTGTCATTGAtgagtcaatgcaatgacttccgaaa
tttttaagaatgttttac
Run BLAST on NCBI

transcript from alignment at scaffold_49:576143..577810+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068802 ID=TCONS_00068802|Name=TCONS_00068802|organism=Clytia hemisphaerica|type=transcript|length=1668bp|location=Sequence derived from alignment at scaffold_49:576143..577810+ (Clytia hemisphaerica)
TTTTTGcatgttattttctttttaatgaaagtaaatctttttaatttatt caGTAGCCATGAAATTATTCAAGCAAGGAGCAGAAGCACGCCTTTACAAA GCTGACTTTTTGGGTAAGAAAGTCATTGTCAAAGAACGTTTTCAAAAGAC ATATCGACATCCACAATTAGATTTGAAGCTAACTCAAAAAAGAacccttc aggaagctagagcAATATTACGATGCAGAAAAGCNcaggcgttctctaat tctccattcggcgtccggtcattttgaatgaaaacaaaacttaaaaaggg cgcgctatcagtgaaagttatcaaaacaaatttgttgtcaaagagattta acagtaagggAAAATACAGCTAGAATGCTCTTCACTTCATCCATAACATA TTACAGAAATACATTGAAGAGCCTGGGACAATATACAGCCTTGGTGGACA CCAACATTGACTGCAAACTATTCATTTAATTTCCCTACAATTTGAAGAGC ACATTCAGTTTGGTCATACATATTCTCTATGATGTTCACAATATTTCGAT TGACACCAATTGATCTTAGTATTTTCCAAAATGCTTTCCTCCAGACTGTA TCGAAAGCAGCTTTGAAGTCTATGAAGTGaaaatttaaaggctttttcaA TCAACTGCCTAACAATGAAAACAACTGACATATAGGCAGAAATTACAGAG TCAAACACTACTTCTATAGGGTTTGTTAAAATCAGGTAAATTCAATTAGC ATTTATCCTTTTTTGcatgttattttctttttaatgaaagtaaatctttt taatttattcaGTAGCCATGAAATTATTCAAGCAAGGAGCAGAAGCACGC CTTTACAAAGCTGACTTTTTGGGTAAGAAAGTCATTGTCAAAGAACGTTT TCAAAAGACATATCGACATCCACAATTAGATTTGAAGCTAACTCAAAAAA GAacccttcaggaagctagagcAATATTACGATGCAGAAAAGCTGGAATA AGTACACCTTTGGTGTATTTCATTGaccataaaaaacatcaaatttttat gGAGGAAATTCTTGACAGTTTGACACTCCGTGAAAGAATAGACACACTTT TAAAGCTTAACACAGATGAAGCTAAATCACAACTTGTGTCAATGGCAAAA GCAATAGGAAAGATGATTGCTCATATTCACTCAGTTGACATTATCCATGG AGATCTTACGACATCCAATATCCTTGTTACTTCCAAGAATGATAAAGAAG ATTATGTTCTTATTGACTTTGGATTAAGTAGTGTTTCCAAATTTTCTGAA GATATGGGTGTTGATCTTTATGTACTGGAAAGAGCATTTTTAAGCACACA TCCAAACACAGAATGGCTCTTTGCTGAAATCTTAGACAGTTACTTTAAAT GTATTACTGACCCGAAAAGAAACAAAGAGATCATGGAAAAATTAGAAGAA ATTAGAATGCGCGGCCGAAAACGAGTAATGATtggataagttttgatata ataGTTTTTTTCTGCATTTTGTATATTCATAAGCATCAGAAGATCATTTC ATTATTGTTTGTAATGTGAATGTGTTTAtcattttcaacctttttctttt caatttgtaAAACATTTGTCATTGAtgagtcaatgcaatgacttccgaaa tttttaagaatgttttac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042899XLOC_042899Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068802-exon-scaffold_49-1491911889:576143..577810TCONS_00068802-exon-scaffold_49-1491911889:576143..577810Clytia hemisphaericaexon
TCONS_00068802-exon-scaffold_49-1510915933:576143..577810TCONS_00068802-exon-scaffold_49-1510915933:576143..577810Clytia hemisphaericaexon
TCONS_00068802-exon-scaffold_49-1575043694:576143..577810TCONS_00068802-exon-scaffold_49-1575043694:576143..577810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:576143..577810 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.942763 0.644539 0.85995 0.722794 1.15698 0.724559 0.496292 1.6455 0.509231 1.26343 0.62194 1.17555 0.65457 0.742542 0.916192 0.915168 0.500302 0.619412 1.22992 0.448154 1.2286 1.1972 0.329095 0.701502 1.05514 1.07074 1.17144 1.94962 0.769108 0.354611
Blast
BLAST of TCONS_00068802 vs. Swiss-Prot (Human)
Match: PRPK (TP53-regulating kinase OS=Homo sapiens GN=TP53RK PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 8.263e-75
Identity = 112/224 (50.00%), Postives = 166/224 (74.11%), Query Frame = 2
Query:  815 AMKLFKQGAEARLYKADFLGKKVIVKERFQKTYRHPQLDLKLTQKRTLQEARAILRCRKAGISTPLVYFIDHKKHQIFMEEILDSLTLRERIDTLLKLNTDEAKSQLVSMAKAIGKMIAHIHSVDIIHGDLTTSNILVTSKNDKEDYVLIDFGLSSVSKFSEDMGVDLYVLERAFLSTHPNTEWLFAEILDSYFKCITDPKRNKEIMEKLEEIRMRGRKRVMIG 1486
             ++L KQGAEAR+++  F G+  ++K RF K YRHP L+ +L ++RT+QEARA+LRCR+AGIS P+V+F+D+  + ++MEEI  S+T+R+ I + ++  T++    L ++AK IG+++A +H  D+IHGDLTTSN+L+    ++ + VLIDFGLS +S   ED GVDLYVLE+AFLSTHPNTE +F   L SY    T  K+ + +++KL+E+R+RGRKR M+G
Sbjct:   35 GLELVKQGAEARVFRGRFQGRAAVIKHRFPKGYRHPALEARLGRRRTVQEARALLRCRRAGISAPVVFFVDYASNCLYMEEIEGSVTVRDYIQSTME--TEKTPQGLSNLAKTIGQVLARMHDEDLIHGDLTTSNMLLKPPLEQLNIVLIDFGLSFISALPEDKGVDLYVLEKAFLSTHPNTETVFEAFLKSY---STSSKKARPVLKKLDEVRLRGRKRSMVG 253          
The following BLAST results are available for this feature:
BLAST of TCONS_00068802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRPK8.263e-7550.00TP53-regulating kinase OS=Homo sapiens GN=TP53RK P... [more]
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