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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068802 ID=TCONS_00068802|Name=TCONS_00068802|organism=Clytia hemisphaerica|type=transcript|length=1668bp
TTTTTGcatgttattttctttttaatgaaagtaaatctttttaatttatt
caGTAGCCATGAAATTATTCAAGCAAGGAGCAGAAGCACGCCTTTACAAA
GCTGACTTTTTGGGTAAGAAAGTCATTGTCAAAGAACGTTTTCAAAAGAC
ATATCGACATCCACAATTAGATTTGAAGCTAACTCAAAAAAGAacccttc
aggaagctagagcAATATTACGATGCAGAAAAGCNcaggcgttctctaat
tctccattcggcgtccggtcattttgaatgaaaacaaaacttaaaaaggg
cgcgctatcagtgaaagttatcaaaacaaatttgttgtcaaagagattta
acagtaagggAAAATACAGCTAGAATGCTCTTCACTTCATCCATAACATA
TTACAGAAATACATTGAAGAGCCTGGGACAATATACAGCCTTGGTGGACA
CCAACATTGACTGCAAACTATTCATTTAATTTCCCTACAATTTGAAGAGC
ACATTCAGTTTGGTCATACATATTCTCTATGATGTTCACAATATTTCGAT
TGACACCAATTGATCTTAGTATTTTCCAAAATGCTTTCCTCCAGACTGTA
TCGAAAGCAGCTTTGAAGTCTATGAAGTGaaaatttaaaggctttttcaA
TCAACTGCCTAACAATGAAAACAACTGACATATAGGCAGAAATTACAGAG
TCAAACACTACTTCTATAGGGTTTGTTAAAATCAGGTAAATTCAATTAGC
ATTTATCCTTTTTTGcatgttattttctttttaatgaaagtaaatctttt
taatttattcaGTAGCCATGAAATTATTCAAGCAAGGAGCAGAAGCACGC
CTTTACAAAGCTGACTTTTTGGGTAAGAAAGTCATTGTCAAAGAACGTTT
TCAAAAGACATATCGACATCCACAATTAGATTTGAAGCTAACTCAAAAAA
GAacccttcaggaagctagagcAATATTACGATGCAGAAAAGCTGGAATA
AGTACACCTTTGGTGTATTTCATTGaccataaaaaacatcaaatttttat
gGAGGAAATTCTTGACAGTTTGACACTCCGTGAAAGAATAGACACACTTT
TAAAGCTTAACACAGATGAAGCTAAATCACAACTTGTGTCAATGGCAAAA
GCAATAGGAAAGATGATTGCTCATATTCACTCAGTTGACATTATCCATGG
AGATCTTACGACATCCAATATCCTTGTTACTTCCAAGAATGATAAAGAAG
ATTATGTTCTTATTGACTTTGGATTAAGTAGTGTTTCCAAATTTTCTGAA
GATATGGGTGTTGATCTTTATGTACTGGAAAGAGCATTTTTAAGCACACA
TCCAAACACAGAATGGCTCTTTGCTGAAATCTTAGACAGTTACTTTAAAT
GTATTACTGACCCGAAAAGAAACAAAGAGATCATGGAAAAATTAGAAGAA
ATTAGAATGCGCGGCCGAAAACGAGTAATGATtggataagttttgatata
ataGTTTTTTTCTGCATTTTGTATATTCATAAGCATCAGAAGATCATTTC
ATTATTGTTTGTAATGTGAATGTGTTTAtcattttcaacctttttctttt
caatttgtaAAACATTTGTCATTGAtgagtcaatgcaatgacttccgaaa
tttttaagaatgttttac Run BLAST on NCBI transcript from alignment at scaffold_49:576143..577810+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068802 ID=TCONS_00068802|Name=TCONS_00068802|organism=Clytia hemisphaerica|type=transcript|length=1668bp|location=Sequence derived from alignment at scaffold_49:576143..577810+ (Clytia hemisphaerica)
TTTTTGcatgttattttctttttaatgaaagtaaatctttttaatttatt
caGTAGCCATGAAATTATTCAAGCAAGGAGCAGAAGCACGCCTTTACAAA
GCTGACTTTTTGGGTAAGAAAGTCATTGTCAAAGAACGTTTTCAAAAGAC
ATATCGACATCCACAATTAGATTTGAAGCTAACTCAAAAAAGAacccttc
aggaagctagagcAATATTACGATGCAGAAAAGCNcaggcgttctctaat
tctccattcggcgtccggtcattttgaatgaaaacaaaacttaaaaaggg
cgcgctatcagtgaaagttatcaaaacaaatttgttgtcaaagagattta
acagtaagggAAAATACAGCTAGAATGCTCTTCACTTCATCCATAACATA
TTACAGAAATACATTGAAGAGCCTGGGACAATATACAGCCTTGGTGGACA
CCAACATTGACTGCAAACTATTCATTTAATTTCCCTACAATTTGAAGAGC
ACATTCAGTTTGGTCATACATATTCTCTATGATGTTCACAATATTTCGAT
TGACACCAATTGATCTTAGTATTTTCCAAAATGCTTTCCTCCAGACTGTA
TCGAAAGCAGCTTTGAAGTCTATGAAGTGaaaatttaaaggctttttcaA
TCAACTGCCTAACAATGAAAACAACTGACATATAGGCAGAAATTACAGAG
TCAAACACTACTTCTATAGGGTTTGTTAAAATCAGGTAAATTCAATTAGC
ATTTATCCTTTTTTGcatgttattttctttttaatgaaagtaaatctttt
taatttattcaGTAGCCATGAAATTATTCAAGCAAGGAGCAGAAGCACGC
CTTTACAAAGCTGACTTTTTGGGTAAGAAAGTCATTGTCAAAGAACGTTT
TCAAAAGACATATCGACATCCACAATTAGATTTGAAGCTAACTCAAAAAA
GAacccttcaggaagctagagcAATATTACGATGCAGAAAAGCTGGAATA
AGTACACCTTTGGTGTATTTCATTGaccataaaaaacatcaaatttttat
gGAGGAAATTCTTGACAGTTTGACACTCCGTGAAAGAATAGACACACTTT
TAAAGCTTAACACAGATGAAGCTAAATCACAACTTGTGTCAATGGCAAAA
GCAATAGGAAAGATGATTGCTCATATTCACTCAGTTGACATTATCCATGG
AGATCTTACGACATCCAATATCCTTGTTACTTCCAAGAATGATAAAGAAG
ATTATGTTCTTATTGACTTTGGATTAAGTAGTGTTTCCAAATTTTCTGAA
GATATGGGTGTTGATCTTTATGTACTGGAAAGAGCATTTTTAAGCACACA
TCCAAACACAGAATGGCTCTTTGCTGAAATCTTAGACAGTTACTTTAAAT
GTATTACTGACCCGAAAAGAAACAAAGAGATCATGGAAAAATTAGAAGAA
ATTAGAATGCGCGGCCGAAAACGAGTAATGATtggataagttttgatata
ataGTTTTTTTCTGCATTTTGTATATTCATAAGCATCAGAAGATCATTTC
ATTATTGTTTGTAATGTGAATGTGTTTAtcattttcaacctttttctttt
caatttgtaAAACATTTGTCATTGAtgagtcaatgcaatgacttccgaaa
tttttaagaatgttttac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068802-exon-scaffold_49-1491911889:576143..577810 | TCONS_00068802-exon-scaffold_49-1491911889:576143..577810 | Clytia hemisphaerica | exon |
| TCONS_00068802-exon-scaffold_49-1510915933:576143..577810 | TCONS_00068802-exon-scaffold_49-1510915933:576143..577810 | Clytia hemisphaerica | exon |
| TCONS_00068802-exon-scaffold_49-1575043694:576143..577810 | TCONS_00068802-exon-scaffold_49-1575043694:576143..577810 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:576143..577810 + |
Blast
BLAST of TCONS_00068802 vs. Swiss-Prot (Human)
Match: PRPK (TP53-regulating kinase OS=Homo sapiens GN=TP53RK PE=1 SV=2) HSP 1 Score: 241.506 bits (615), Expect = 8.263e-75 Identity = 112/224 (50.00%), Postives = 166/224 (74.11%), Query Frame = 2
Query: 815 AMKLFKQGAEARLYKADFLGKKVIVKERFQKTYRHPQLDLKLTQKRTLQEARAILRCRKAGISTPLVYFIDHKKHQIFMEEILDSLTLRERIDTLLKLNTDEAKSQLVSMAKAIGKMIAHIHSVDIIHGDLTTSNILVTSKNDKEDYVLIDFGLSSVSKFSEDMGVDLYVLERAFLSTHPNTEWLFAEILDSYFKCITDPKRNKEIMEKLEEIRMRGRKRVMIG 1486
++L KQGAEAR+++ F G+ ++K RF K YRHP L+ +L ++RT+QEARA+LRCR+AGIS P+V+F+D+ + ++MEEI S+T+R+ I + ++ T++ L ++AK IG+++A +H D+IHGDLTTSN+L+ ++ + VLIDFGLS +S ED GVDLYVLE+AFLSTHPNTE +F L SY T K+ + +++KL+E+R+RGRKR M+G
Sbjct: 35 GLELVKQGAEARVFRGRFQGRAAVIKHRFPKGYRHPALEARLGRRRTVQEARALLRCRRAGISAPVVFFVDYASNCLYMEEIEGSVTVRDYIQSTME--TEKTPQGLSNLAKTIGQVLARMHDEDLIHGDLTTSNMLLKPPLEQLNIVLIDFGLSFISALPEDKGVDLYVLEKAFLSTHPNTETVFEAFLKSY---STSSKKARPVLKKLDEVRLRGRKRSMVG 253
The following BLAST results are available for this feature:
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