TCONS_00068797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068797
Unique NameTCONS_00068797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3085

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068797 ID=TCONS_00068797|Name=TCONS_00068797|organism=Clytia hemisphaerica|type=transcript|length=3085bp
aaaaaaaacaaagcaatGAATCGAAGTATGAATAACAAAAATCCAAAGAT
ATTTGTCTATCTGATATCAGGCTTTCTTTTGGGGCTGGTTATACGTCTCA
AATTTTCATCGTCATATCAAGCACTTTCGAAATGTCACGATAAAGTTATT
TTGGATCAAAAAGAACAATCTAAATCTGGTCGAAGCATAAATATAGAAAA
GCCAGTAACAGTAAAGGCAAAACCAAATCGATTTAACAATGACTACAGGC
CTTATTTTGTATACAGTGAGCTTGGTTTCAAAAATCTAATGTTTGTTGGT
GTCAAAATAAGTGAACAACAACTTATGACCAATGGTGTGACCATTAATAA
CACGTGGTCTTCAGATGATCAGACTGTTGTTTTCTTCACACCATACTCAA
GAGACAGTGAATTTCATAACCGATTTGTGAAGAAATTAAACCTTAACGTC
ATTCAATTACCAGATATTGTGGACACGTCGAGTGATTTGGAATTTTCATT
GCGTATTGTACAATATATGAAAGATCACCATTTGAATAAATATAACTGGT
TTATTTTGAGTAATGTTAATGTTTATTTGAATATAGTTAATGCTGGAGAT
CATTTAAAACGGTTGAATTCGACACAACCAATCATACTGGCAAATAAAAT
TAAAGGAGAATGCTCTTCAAGCCATGGCGTTATAATGAGTCATACAGCTC
TTTCAAACTATTACCAAACTGATGGAGCGGGTTTTCCTTCTGGGTTGTTA
TCAAAACTGGGAAATAAGGAAACACTTTTTTGCAATTCCGAACGATTTCT
TAATATCCAAAGCAGCAATATGCAACGAGTTTTAGGAGATGGAAACACCC
TAAATGTTATCTCTATTGCTCCTCTCAAATCAAACACGGATATGTTGAAA
TTACACAAAACTATCGTTCAAGAACGTTTAAAGGAAACTTTAAAAACTTC
ACGTAACTTACAAGCTTCGATCAAAGAATTTCATGATAGAGTGCCGAACG
GTTTGTTCATTTAATTTACGTATATCTGAGTACCAATTAATGGCGATTTC
AAATACACAAATTTCCTATTAGTAGATTCATGTAAAAACGTCACGGAAAA
AAGTCGAGaaaagctctgattggctgagagATACTTTGGACATTTTGAGA
TTGCAATTTATGTGTGCAATTTACAACCCATCAGAGCTCTACTCGACGTT
TTTTTGTGACTTTTGTATATGAATCTGCTTCTAAGGTGTGTGTTCGTTTT
GACTTTTGACGACAAACTGACGCTCTACACGACTGACCAGACAACAGACT
ACTCGGGACCATCTACAAACATCCAAAACTCTCTGGAACTGAAGTGACAA
TTGACTGCTTTAAAAACTACACACTCGACTGGAAAATCCTACTCACAAAA
TATGACAGATGTGTTGGAGAAGAAATTAACATGGCCACTAGGCTATCCGC
GACCATTCCGACCATCATCAAGATTTGAAGTTATTCAATGGACattattt
gataaaaacaaGATGTATGCTTTCACTGATCAAGAGCCAACCTCATCTTT
CCCTGCTTCATATTATGGTGATTTTACAGAGATTCTACAAACAGTAAAAC
AAGCTATCAATCAAAAATATGGAAATCGTAGATTGGAATTGTTAAATGGA
TATCACAGAGTTGATCCGAAAAGAGGTGCAGAATATCTGATTGAAATGAA
GGACAAATCGTCAGATAAAGTGTATCGTTATCAGTTACTTCGACCTTTCT
CCAGAGTTGAATCACTTTCAATGCCAGCTGCTACAGAACAGAAAGGAATA
CACATTGTACTACCGTTACTAAAGGATGacatgaaatattttgaaaagtt
caTGCAAATGTACAAAAGACTTTGTTTACAATCTGGAGAAAATGTTGTTC
TTCTAACTGTCTTTGTCAATATTCGTGATGGGaagtttgaagaagaaaaa
gaaccgTTTCTAGAATTCAAAAATCTGATTTCAAGATACAAGCAATCATA
CATGTGGGCTCAATTACCATGGTTACAAGTTGGTGTTAAACACATTTCTG
ATGTCTTGGTGATGGACATTGTGTCAATGAAACTACCTTCAAACGCTCTT
ATACTCTTGCTCTCACATCATAATCATTTCACTGTCAATTTTTTAAACAG
ATGTCGTGTTAACGTAGTGACTGGATTGCAGgtCTTTTTCCCCATTCCTT
TCTTGGAATACAATCCAGACATTGTTTACAATGGCAAGCAGAAACCAGCA
TTTTCAGAAGTACACACCACAACCGGGTTCTGGGGTCGAGACTCATATCA
AGTTGGCTGTTTCAATAATAATGATTATAAAGCAGCTCGTATGTGGAAAA
ATGACTTCCTTGATGAAAACTTGCCTAACAATAAAACTATTCTTGGTGTT
TTTGAAGGATCCAATCTTAATGTTTTCAGAGCTTTGGATAGTGAACTTCA
TACTTGGTATGAGTTTGAGAATTGTGTTTCAGATGCCAAAACAAATAAAA
CCGGATGTCATTTTAAGAATTCACAAAGACTTGGTAATAGAGCTCAGTTA
GCTCaagttttctttgattttaataATTCGAAAAAACCATAGACATATTA
TCAGCATTAGAAATATGTATTTTAGGCCTGGCGGAAGcagggagactggg
gagacttcagcttccccacttttgagcaaatgagatttttttctcaaatt
cctagcaaattttatctcattttgagccttcagcctccccactttaagGT
CGTTCCGCCGGACctgtattttgaatatttagcATATTTTCTTAAGTAGA
TATGAGTTTTCAATTATCATTGTATTCCTCAGggaaattaatgcgtgtcc
aaatttcaAACATGTTATTAGGCcacttatgatgacgtcataaaacaaGA
GAATTAAATATCTTGAGAACTACTCagtaaaactttatgaaatttttacC
AATGATATCAAAAGGAGTATTGGGCTCTccagaaaaaagttttacatggg
ggttggaggatataacaaattttagtgatttaccccccggacagggtgac
ttttggccccccggacagTAGGtcttacccccgga
Run BLAST on NCBI

transcript from alignment at scaffold_49:551075..558011+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068797 ID=TCONS_00068797|Name=TCONS_00068797|organism=Clytia hemisphaerica|type=transcript|length=6937bp|location=Sequence derived from alignment at scaffold_49:551075..558011+ (Clytia hemisphaerica)
aaaaaaaacaaagcaatGAATCGAAGTATGAATAACAAAAATCCAAAGAT
ATTTGTCTATCTGATATCAGGCTTTCTTTTGGGGCTGGTTATACGTCTCA
AATTTTCATCGTCATATCAAGCACTTTCGAAATGTCACGATAAAGTTATT
TTGGATCAAAAAGAACAATCTAAATCTGGTCGAAGCATAAATATAGAAAA
GCCAGTAACAGTAAAGGCAAAACCAAATCGATTTAACAATGACTACAGGC
CTTATTTTGTATACAGTGAGCTTGGTTTCAAAAATCTAATGTTTGTTGGT
GTCAAAATAAGTGAACAACAACTTATGACCAATGGTGTGACCATTAATAA
CACGTGGTCTTCAGATGATCAGACTGTTGTTTTCTTCACACCATACTCAA
GAGACAGTGAATTTCATAACCGATTTGTGAAGAAATTAAACCTTAACGTC
ATTCAATTACCAGATATTGTGGACACGTCGAGTGATTTGGAATTTTCATT
GCGTATTGTACAATATATGAAAGATCACCATTTGAATAAATATAACTGGT
TTATTTTGAGTAATGTTAATGTTTATTTGAATATAGTTAATGCTGGAGAT
CATTTAAAACGGTTGAATTCGACACAACCAATCATACTGGCAAATAAAAT
TAAAGGAGAATGCTCTTCAAGCCATGGCGTTATAATGAGTCATACAGCTC
TTTCAAACTATTACCAAACTGATGGAGCGGGTTTTCCTTCTGGGTTGTTA
TCAAAACTGGGAAATAAGGAAACACTTTTTTGCGTGAGTTTTATATTTCT
TCTAATAATAAAGATATTTTCTTGCCAAGGTATTTACAATCTCAAACTAC
GTTGCATGCTTTAATCGATTGTGATTATTtggaaacttttctttttttgt
gagAAACAAATTGCGTTTTTGCCTTTACCTTTCAAGGACTTTTTTACTAT
TAAATTTTAGAACTCgattaaaattttacttttaaatttacttttgaatC
CACAAAGCTACAAAATCTAGTTTTTTGAAGGTGAatgaatttttctgctt
tttgtAGTAATCCTAATATTCTAAAACGACGGTTTTGACTTTTCTTTCGT
TTTAGAATTCCGAACGATTTCTTAATATCCAAAGCAGCAATATGCAACGA
GTTTTAGGAGATGGAAACACCCTAAATGTTATCTCTATTGCTCCTCTCAA
ATCAAACACGGATATGTTGAAATTACACAAAACTATCGTTCAAGAACGTT
TAAAGGAAACTTTAAAAACTTCACGTAACTTACAAGCTTCGATCAAAGAA
TTTCATGATAGAGTGCCGAACGGTTTGTTCATTTAATTTACGTATATCTG
AGTACCAATTAATGGCGATTTCAAATACACAAATTTCCTATTAGTAGATT
CATGTAAAAACGTCACGGAAAAAAGTCGAGaaaagctctgattggctgag
agATACTTTGGACATTTTGAGATTGCAATTTATGTGTGCAATTTACAACC
CATCAGAGCTCTACTCGACGTTTTTTTGTGACTTTTGTATATGAATCTGC
TTCTAAGGTGTGTGTTCGTTTTGACTTTTGACGACAAACTGACGCTCTAC
ACGACTGACCAGACAACAGACTACTCGGGACCATCTACAAACATCCAAAA
CTCTCTGGAACTGAAGTGACAATTGACTGCTTTAAAAACTACACACTCGA
CTGGAAAATCCTACTCACAAAATATGACAGGTACATAATATTTGACAATT
TATTAAATTGAATAAGCCTAGGAATTAGGCGAAATTATTCTTAATAAATT
AGGAACTATCGACTTAAGAAAATACGGTACGATGTTATTTTTTACTCAAC
AGCGTGATTTTCATTTGGTTCTAACTATAAAGTGTATTATCCTGCATAAG
TTATCATTCCTATAAACTAAAATCGTAATAAGTATAAACCCAGTAGGACA
CACGGCGTCTACAAAACGTTAGATGAGATTCTTAAACAACAGTTTTTGGC
AACTCAGATGGTAGTAACCGAAGTGCAAAGGTAGGGCATTCGGGTGCTGC
GGTGCGCAAGATACCGGGCTCAATCCCCTATTGGGTTATACCAAAGACCT
CGCGCTTAATACGAAATGGTACTTGATTTATCTCTCTGCTTAATGCACAT
TTTGAATAGAAGAATATCTTAAAGAGAAGAATCGAGGGTAAATTGCGAGC
AATCcaaggagaaagagtggcgtcTATCATCCCTACCTTAGGGAAGACAG
TTATAGAAAGAGGACTCTTCGGGTCGCCTCAGACTGCGATGGTACATTTT
TTTCCATACAAAACTAAATGACCTTCAAAAAAGCCTACGCCTTTAAACCa
attataaattttctttcaattcttaGATGTGTTGGAGAAGAAATTAACAT
GGCCACTAGGCTATCCGCGACCATTCCGACCATCATCAAGATTTGAAGTT
ATTCAATGGACattatttgataaaaacaaGATGTATGCTTTCACTGATCA
AGAGCCAACCTCATCTTTCCCTGCTTCATATTATGGTGATTTTACAGAGA
TTCTACAAACAGTAAAACAAGCTATCAATCAAAAATATGGAAATCGTAGA
TTGGAATTGTTAAATGGATATCACAGAGTTGATCCGAAAAGAGGTATTTT
TACTgtcttttgaatcttttttcaatatttcttcgTTTAAAGTTTACATT
TTGTCTCCATATTTCGAacttgaaaatggaaatttgtCTGTTCAAATTAG
ATTCGCATGTGTAGGGTATACACATGCGAATTAAAGAAATGGTTCTCGAG
CATTactttgaattatagaaagattcaaataatgaAAGTTTGAATTAGCA
AGTCTATTGTATCTAAATTCTATGAAACGAAGCTTTTCTCTAATAGTACA
AAATTTCTCTGACAACTTATCACCACAAAACCTTCGGTATATATTATGAT
GTTGTAAGACAAGACAGACAGTGCAATTTTCCAATCGTTTCTTTCGGGTA
GTAGTGAGTTTTATTTCGCAACACGAAATGTCTTCTGTTTCAAGGAtggt
tactcttaggtgccaaataaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccgttt
atttggcacctaagagtagtgGTTCATTTGTGTTTATCCTGACTGAATGA
GGAAGATGGTAAATCAGACTTTGTTTGACTGTCCTCAATTTTGAAGGTCT
GATCAGCGGGTTGTTCTAACGTTTATATCTCTCTTGCTTCTTGATTccct
ggtcaaaattcttgacTCTTCCAAGATCTTAGTAAGATCTTGAAAAGAAT
TTTGACCAGGGTACACTATCGCTAAAGCTGTGAAATGACCGTTTCTTTAG
GTGCAGAATATCTGATTGAAATGAAGGACAAATCGTCAGATAAAGTGTAT
CGTTATCAGTTACTTCGACCTTTCTCCAGAGTTGAATCACTTTCAATGCC
AGCTGCTACAGAACAGAAAGGAATACACATTGTACTACCGTTACTAAAGT
AAGTAAAAAATAACTTCTTTTCATAATATCAATCTGGgttttttagaaag
tttttctCTACGCAAAGTTAGTTGAAAAGATATACAATAGAGTCTATTTA
GCTCGAACCTTTAttataactcaaatgtctccttaactcgaacaagtctt
cacctcccttcagttaacaatgccttatagaTACTTGCTCCATAACTCTT
AATTACCttaaaattcaaacaaattttcgAATTTGCGTTTCTCGGGtgag
ttcgagttatggagattccacCGTATTGGTATCGCCTGGGACTAGTAAAA
GATCGTtaaaatattggacagtcttTCAGTTTTCTAGATGATATTatgtt
atgttttattttcttccattgcttttttctatttttctaatGACGTCACA
GCATATTACCTAAACATATATTACTCAGTATGTATTGAAATAAATCATTG
CTGACCTTGCTTCCTATTTCAAATACTTAATTTCTTTGGTATTTTTCTTT
TCGAAGGGATGacatgaaatattttgaaaagttcaTGCAAATGTACAAAA
GACTTTGTTTACAATCTGGAGAAAATGTTGTTCTTCTAACTGTCTTTGTC
AATATTCGTGATGGGaagtttgaagaagaaaaagaaccgTTTCTAGAATT
CAAAAATCTGATTTCAAGGTGCGAATTACTTGTGTTtaggcttttcctga
aaatttgaTTCTAAAATTCTAGATCCCCCTGGAGGATTTCCTGTATAccc
ttgaaattaaaatttcagtcaaatctttacttgtctgtacacagacccgg
tatctacggctaatttcaaaaaacaatgatctCATTCTTACCAACACTAA
ACAACCCCCAATGCAAACTTCTTATATTTTCAGATACAAGCAATCATACA
TGTGGGCTCAATTACCATGGTTACAAGTTGGTGTTAAACACATTTCTGAT
GTCTTGGTGATGGACATTGTGTCAATGAAACTACCTTCAAACGCTCTTAT
ACTCTTGCTCTCACATCATAATCATTTCACTGTCAATTTTTTAAACAGAT
GTCGTGTTAACGTAGTGACTGGATTGCAGGTACAGTGGGACTTCTTTAAC
Tggaatctctataactcgaatgtctccttaactcgaacaagttttctggc
cCCTTCAACCTTATAAAGCTTAAAAATTCATAACTCtaaatttccataat
tcgaacaattGCATTTCTTTGGGTTCATCACCGTAATTAGATTCACCTTC
TAAATTCAACTAGAGTGCAGAAGGAGCGTATTGAAGCATGTAATTAGGCA
CAGGATATTGTCTTTAGAAGGGTCTATATCCAACGTTTCGAGATGTTTGA
AAACAAGATAGATGTGTCATCGCCATGTATCGAAATCCTCCAAAGATTTT
TCTACGATTTTTCCTCAGAGACCAGTCAGACATATTTTTAACCATTCTGT
CAGTATCTATTGCTTGATAATCACTTAAAACGAGAGCACACTAGTGATTC
TATTAacaattttaatgtttttttacttttcaggtCTTTTTCCCCATTCC
TTTCTTGGAATACAATCCAGACATTGTTTACAATGGCAAGCAGAAACCAG
CATTTTCAGAAGTACACACCACAACCGGGTTCTGGGGTCGAGACTCATAT
CAAGTTGGCTGTTTCAATAATAATGATTATAAAGCAGCTCGTATGTGGAA
AAATGACTTCCTTGATGAAAACTTGCCTAACAATAAAACTATTCTTGGTG
TTTTTGAAGGATCCAATCTTAATGTTTTCAGAGCTTTGGATAGTGAACTT
CATACTTGGTATGAGTTTGAGAATTGTGTTTCAGATGCCAAAACAAATAA
AACCGGATGTCATTTTAAGAATTCACAAAGACTTGGTAATAGAGCTCAGT
TAGCTCaagttttctttgattttaataATTCGAAAAAACCATAGACATAT
TATCAGCATTAGAAATATGTATTTTAGGCCTGGCGGAAGcagggagactg
gggagacttcagcttccccacttttgagcaaatgagatttttttctcaaa
ttcctagcaaattttatctcattttgagccttcagcctccccactttaag
GTCGTTCCGCCGGACctgtattttgaatatttagcATATTTTCTTAAGTA
GATATGAGTTTTCAATTATCATTGTATTCCTCAGggaaattaatgcgtgt
ccaaatttcaAACATGTTATTAGGCcacttatgatgacgtcataaaacaa
GAGAATTAAATATCTTGAGAACTACTCagtaaaactttatgaaattttta
cCAATGATATCAAAAGGAGTATTGGGCTCTccagaaaaaagttttacatg
ggggttggaggatataacaaattttagtgatttaccccccggacagggtg
acttttggccccccggacagTAGGtcttacccccgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042898XLOC_042898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068797-exon-scaffold_49-1491911889:551075..551857TCONS_00068797-exon-scaffold_49-1491911889:551075..551857Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1510915933:551075..551857TCONS_00068797-exon-scaffold_49-1510915933:551075..551857Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1575043694:551075..551857TCONS_00068797-exon-scaffold_49-1575043694:551075..551857Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1491911889:552180..552804TCONS_00068797-exon-scaffold_49-1491911889:552180..552804Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1510915933:552180..552804TCONS_00068797-exon-scaffold_49-1510915933:552180..552804Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1575043694:552180..552804TCONS_00068797-exon-scaffold_49-1575043694:552180..552804Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1491911889:553451..553717TCONS_00068797-exon-scaffold_49-1491911889:553451..553717Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1510915933:553451..553717TCONS_00068797-exon-scaffold_49-1510915933:553451..553717Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1575043694:553451..553717TCONS_00068797-exon-scaffold_49-1575043694:553451..553717Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1491911889:555425..555572TCONS_00068797-exon-scaffold_49-1491911889:555425..555572Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1510915933:555425..555572TCONS_00068797-exon-scaffold_49-1510915933:555425..555572Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1575043694:555425..555572TCONS_00068797-exon-scaffold_49-1575043694:555425..555572Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1491911889:556081..556242TCONS_00068797-exon-scaffold_49-1491911889:556081..556242Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1510915933:556081..556242TCONS_00068797-exon-scaffold_49-1510915933:556081..556242Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1575043694:556081..556242TCONS_00068797-exon-scaffold_49-1575043694:556081..556242Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1491911889:556458..556653TCONS_00068797-exon-scaffold_49-1491911889:556458..556653Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1510915933:556458..556653TCONS_00068797-exon-scaffold_49-1510915933:556458..556653Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1575043694:556458..556653TCONS_00068797-exon-scaffold_49-1575043694:556458..556653Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1491911889:557108..558011TCONS_00068797-exon-scaffold_49-1491911889:557108..558011Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1510915933:557108..558011TCONS_00068797-exon-scaffold_49-1510915933:557108..558011Clytia hemisphaericaexon
TCONS_00068797-exon-scaffold_49-1575043694:557108..558011TCONS_00068797-exon-scaffold_49-1575043694:557108..558011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:551075..558011 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.30453	0.494516	0.768888	0.337337	0.622435	1.46965	0.356373	1.06535	0.586928	0.476801	0.993252	1.17878	0.132142	0.315499	0.387113	0.283221	0.457219	0.183884	0.485583	0.169376	0.588874	1.07712	0.174584	0.523439	0	0.116199	0.208799	0.668465	0.169002	0.344373
Blast
[Close]
BLAST of TCONS_00068797 vs. Swiss-Prot (Human)
Match: CHSS2 (Chondroitin sulfate synthase 2 OS=Homo sapiens GN=CHPF PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.223e-46
Identity = 118/401 (29.43%), Postives = 199/401 (49.63%), Query Frame = 1 
Query: 1417 EKKLTWPLGYPRPFRPSSRFEVIQWTLFDKNKMYAFTDQEPTSSFPASYYGDFTEILQTVKQAINQKYGN----RRLELLNGYHRVDPKRGAEYLIEMKDKSSDK-------VYRYQLLRPFSRVESLSMPAATEQKGIHIVLPLLKDDMKYFEKFMQMYKRLCLQSGENVVLLTVFV--NIRDGXXXXXXXXXXXXXNLISRYKQSYMWAQLPWLQVGVKHISDVLVMDIVSMKLPSNALILLLSHHNHFTVNFLNRCRVNVVTGLQVFFPIPFLEYNPDIVYNGKQKPAFSEVHTTTGFWGRDSYQVGCFNNNDYKAA--RMWKNDFLDENLPNNKTILGVF-EGSNLNVFRALDSELHTWYEFENCVSDAKTNK-TGCHFKNSQRLGNRAQLAQVFFD 2568
            ++   WP+G P P RP+SRFEV++W  F +   ++  D  P      +   D  ++L T  + +N++Y      ++ +L+NGY R DP RG EY ++++ ++            R QLLRP SRVE L +P  TE   + ++LPL   +      F++ +    L+ G+    LT+ +    R  +     + F   K  ++  ++ +  A++PWL V     S + +MD++S K P + L LL       T +FLNRCR++ ++G Q FFP+ F  ++P +     Q P   E+   TG + R +    CF N+DY AA  R+      +E L  +  +  +F   S+L+V RA++  L   Y  + C +    +    C     + LG+R QLA + F+
Sbjct:  370 DQAAAWPVGIPAPSRPASRFEVLRWDYFTEQHAFSCADGSPRCPLRGADRADVADVLGTALEELNRRYHPALRLQKQQLVNGYRRFDPARGMEYTLDLQLEALTPQGGRRPLTRRVQLLRPLSRVEILPVPYVTEASRLTVLLPLAAAERDLAPGFLEAFATAALEPGDAAAALTLLLLYEPRQAQRVAHADVFAPVKAHVAELERRFPGARVPWLSVQTAAPSPLRLMDLLSKKHPLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAFHPAVAP--PQGPGPPELGRDTGRFDRQAASEACFYNSDYVAARGRLAAASEQEEELLESLDVYELFLHFSSLHVLRAVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQLAMLLFE 768
The following BLAST results are available for this feature:
BLAST of TCONS_00068797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHSS23.223e-4629.43Chondroitin sulfate synthase 2 OS=Homo sapiens GN=... [more]
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