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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068778 ID=TCONS_00068778|Name=TCONS_00068778|organism=Clytia hemisphaerica|type=transcript|length=1460bpRun BLAST on NCBI protein sequence of TCONS_00068778-protein >TCONS_00068778-protein ID=TCONS_00068778-protein|Name=TCONS_00068778-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp MEGGKTVSQEEAANKFNLGNEAFVDEDFTTSIKCYTEALELDKENFDYYLRun BLAST on NCBI transcript from alignment at scaffold_49:351575..366904+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068778 ID=TCONS_00068778|Name=TCONS_00068778|organism=Clytia hemisphaerica|type=transcript|length=15330bp|location=Sequence derived from alignment at scaffold_49:351575..366904+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_49:351575..366904+ >TCONS_00068778 ID=TCONS_00068778|Name=TCONS_00068778|organism=Clytia hemisphaerica|type=CDS|length=13932bp|location=Sequence derived from alignment at scaffold_49:351575..366904+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068778 vs. Swiss-Prot (Human)
Match: SGT1 (Protein SGT1 homolog OS=Homo sapiens GN=SUGT1 PE=1 SV=3) HSP 1 Score: 253.062 bits (645), Expect = 1.244e-78 Identity = 158/377 (41.91%), Postives = 222/377 (58.89%), Query Frame = 3
Query: 156 FNLGNEAFVDEDFTTSIKCYTEALELDKENFDYYLKRCNAYIKISNFSDALSDVNYSIQYNTENSKAWQRKGLVLFSMEKFEEALEAYQKALELHGPNEDIQK-YIRKCEAEINLTKQGSADQTKI---SIGLSSLHPTKESTIKDQGQMKQQEATQPATALKPKIKHDWYQTETHVILTVLAKSLKQEKVQIEFQSKSLSVTAKLPNGNDYSLELDLAHDIDPKDSRFKVLSTKIEIKMKKCEGIRWSSLETDNE----SQFTKNAKATKERTESTSGATSAVDVHKYPSSKHMYSDWDKLAKQLQEEEKTENMEGDAALNRLFQQIYSDGSDETKRAMNKSFQESGGTVLSTNWKDIKKEKVEVKPPDCMEYKKY 1262
F ++A +DED +++ T+ALE ++ YY +R +I + N+ A++D S++ N NS A RKG+ + + + ALE + + +L DI+ + R +A + L S+D + S G++ IK + Q Q + + KIK+DWYQTE+ V++T++ K++++ V +EF K LS KLP+G DY+L+L+L H I P+ S FKVLSTKIEIK+KK E +RW LE + QF + K + YPSS +WDKL +++EEEK E +EGDAALNRLFQQIYSDGSDE KRAMNKSF ESGGTVLSTNW D+ K KVE+ PPD ME+KKY
Sbjct: 15 FQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKSLELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKL-----DIETGFHRVGQAGLQLLT--SSDPPALDSQSAGITGADANFSVWIK-RCQEAQNGSESEVWTHQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVK------------------NLYPSSSPYTRNWDKLVGEIKEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDMEWKKY 365 The following BLAST results are available for this feature:
BLAST of TCONS_00068778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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