TCONS_00068773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068773
Unique NameTCONS_00068773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068773 ID=TCONS_00068773|Name=TCONS_00068773|organism=Clytia hemisphaerica|type=transcript|length=476bp
GAGCCGGTGAACCTCATCTGAGCATTTCTATCCTTCGACAACAGAGGTTT
CAAGTCCATATAAATACTAGATTTTCTTTGAACTTCCAAATACAGATTTT
CACGGTCAAAACTTGTGCACTTCTCTAGTGGACGATACAAGTTCAAGTTA
GTACATATGTCTTTGCGGACCCTTGGAGTCGCTGTGGCTGTTAGAGCCAG
TAAAGGAACATCAGGGACTACTTTTTTAATGAAACTCAGTTGTTGGTATG
AGGTGCGAAAATCATATCCCCACTGCGAGACACAATGTGCTTCGTCGACT
GCAACGCAAACTAAATTGGTCTTTTCACTCAACTCCTTGAGGAAATTTTG
AGATGCGCAAAGGTATTCAGGCGTGACGTAAACCAGGTTCAATTTTCCTC
TCAATACATCGTTCTTGATGGTGGCAGAGTTGGTTTGTGCACTTCCTAAG
TAACCAGCAGGGATATTCGATGaact
Run BLAST on NCBI

transcript from alignment at scaffold_49:292974..293502+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068773 ID=TCONS_00068773|Name=TCONS_00068773|organism=Clytia hemisphaerica|type=transcript|length=529bp|location=Sequence derived from alignment at scaffold_49:292974..293502+ (Clytia hemisphaerica)
GAGCCGGTGAACCTCATCTGAGCATTTCTATCCTTCGACAACAGAGGTTT
CAAGTCCATATAAATACTAGATTTTCTTTGAACTTCCAAATACAGATTTT
CACGGTCAAAACTTGTGCACTTCTCTAGTGGACGATACAAGTTCAAGTTA
GTACATATGTCTTTGCGGACCCTTGGAGTCGCTGTGGCTGTTAGAGCCAG
TAAAGGAACATCAGGGACTACTTTTTTAATGAAACTCAGTTGTTGGTATG
AGGTGCGAAAATCATATCCCCACTGCGAGACACAATGTGCTTCGTCGACT
GCAACGCAAACTAAATTGGTCTTTTCACTCAACTCCTTGAGGAAATTTTG
AGATGCGCAAAGGTATTCAGGCGTGACGTAAACCAGGTTCAATTTTCCTC
TCAATACATCGTTCTTGATGGTGGCAGAGTTGGTTTGTGCACTTCCTNTC
CTCTCAACACATCGTTCTTGATGGTGGCAGAGTTGGTTTGTGCACTTCCT
AAGTAACCAGCAGGGATATTCGATGaact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042886XLOC_042886Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068773-exon-scaffold_49-1491911889:292974..293380TCONS_00068773-exon-scaffold_49-1491911889:292974..293380Clytia hemisphaericaexon
TCONS_00068773-exon-scaffold_49-1510915933:292974..293380TCONS_00068773-exon-scaffold_49-1510915933:292974..293380Clytia hemisphaericaexon
TCONS_00068773-exon-scaffold_49-1575043694:292974..293380TCONS_00068773-exon-scaffold_49-1575043694:292974..293380Clytia hemisphaericaexon
TCONS_00068773-exon-scaffold_49-1491911889:293434..293502TCONS_00068773-exon-scaffold_49-1491911889:293434..293502Clytia hemisphaericaexon
TCONS_00068773-exon-scaffold_49-1510915933:293434..293502TCONS_00068773-exon-scaffold_49-1510915933:293434..293502Clytia hemisphaericaexon
TCONS_00068773-exon-scaffold_49-1575043694:293434..293502TCONS_00068773-exon-scaffold_49-1575043694:293434..293502Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:292974..293502 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.219832	0	1.07646	0	0	0	0	0	0	0	0	0.0304326	0	0	0	0	0	0	0	0	0.951658	0	0	0.157087	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
Blast
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BLAST of TCONS_00068773 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 1.043e-41
Identity = 76/157 (48.41%), Postives = 103/157 (65.61%), Query Frame = -1 
Query:    3 SNIPAGYLGSAQTNSATIKNDVLRGKLNLVYVTPEYLCASQNFLKELSEKTNLVCVAVDEAHCVSQWGYDFRTSYQQLSFIKKVVPDVPLLALTATATPRVRKDICTNLNLYRPLEKCTSFDRENLYLEVQRKSS-IYMDLKPLLSKDRNAQMRFTG 470
            SNIPA +LGSAQ  S  +  D+  GK  +VYVTPEY   +   L++L     +  +AVDEAHC+S+WG+DFR S+++L  +K  +P VP++ALTATA+  +R+DI   LNL  P   CT FDR NLYLEV+RK+  I  DL+P L K  ++   F G
Sbjct:  612 SNIPACFLGSAQ--SENVLTDIKLGKYRIVYVTPEYCSGNMGLLQQLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRKTGNILQDLQPFLVK-TSSHWEFEG 765
The following BLAST results are available for this feature:
BLAST of TCONS_00068773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN1.043e-4148.41Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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