TCONS_00068769 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068769
Unique NameTCONS_00068769
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068769 ID=TCONS_00068769|Name=TCONS_00068769|organism=Clytia hemisphaerica|type=transcript|length=218bp
CCGTCCGAAATTCAAGAACAAAACCACCAACATTGAAACCACAAGATAAG
ACTCGCTTGGATGCAGCTTGTTCTGTGGTTGAAAGATTGCGAAAACGACA
CACGAAGTACATTCAAGATATAGAGCATCTTTCGCAAGTATACATCGAAA
TGGCTTACTGGGATATCAAACACCTCAAAACAGAAACTGGTCCTTTTGAC
ATTCCGGAAAGCAGAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_49:226787..227545+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068769 ID=TCONS_00068769|Name=TCONS_00068769|organism=Clytia hemisphaerica|type=transcript|length=759bp|location=Sequence derived from alignment at scaffold_49:226787..227545+ (Clytia hemisphaerica)
CCGTCCGAAATTCAAGAACAAAACCACCAACATTGAAACCACAAGATAAG
GTGAATGAAGCAATGCTGgtgaatttcaaatttcaggTTATCTAAAGATG
ACTAAAGGATCTGTTCAAATTAAGGGAGCATTTGAATTTTACGATTTCGA
ATTACACCAAATATCCCTTGTATCCTTTTAGCTACCCTCGCTCTACTTTC
AgacatttctttttctttcgggTTCAGACTCGCTTGGATGCAGCTTGTTC
TGTGGTTGAAAGATTGCGAAAACGACACACGAAGTACATTCAAGATATAG
AGCATCTTTCGCAAGTATACATCGAAATGGCTTACTGGGATATCAAACAC
CTCAAAACAGAAACTGGTTTGTTTTTAAGATGAACTTTTTTGTTGTCCTA
TTTTCTGTCACCAAGATACTTCCAATGCCTTCCTAACCTTCCCAGCccgc
aacattttttgaaaaaacatgtGAAAATCTCCaactttttttgttgaaat
ccaacatttaaaattgacataaaagcttgtaacttGAGAGTTGGACAATG
ATTTGAAAAAGGTATTTGtatactttttctctttctttctttcggTTTAT
GCCCTTCTAAATCAAGTGGTAAGGAGTTATAGCCTTAAATCTGGGACTCG
GTATATTGGCAAATTTAAAACGTGTATGCACATTTTCCGGGTTTAAAGGG
TTAATAAATATTTCCCCCTCCTCTCAACAGGTCCTTTTGACATTCCGGAA
AGCAGAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042883XLOC_042883Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068769-exon-scaffold_49-1491911889:226787..226836TCONS_00068769-exon-scaffold_49-1491911889:226787..226836Clytia hemisphaericaexon
TCONS_00068769-exon-scaffold_49-1510915933:226787..226836TCONS_00068769-exon-scaffold_49-1510915933:226787..226836Clytia hemisphaericaexon
TCONS_00068769-exon-scaffold_49-1575043694:226787..226836TCONS_00068769-exon-scaffold_49-1575043694:226787..226836Clytia hemisphaericaexon
TCONS_00068769-exon-scaffold_49-1491911889:227014..227152TCONS_00068769-exon-scaffold_49-1491911889:227014..227152Clytia hemisphaericaexon
TCONS_00068769-exon-scaffold_49-1510915933:227014..227152TCONS_00068769-exon-scaffold_49-1510915933:227014..227152Clytia hemisphaericaexon
TCONS_00068769-exon-scaffold_49-1575043694:227014..227152TCONS_00068769-exon-scaffold_49-1575043694:227014..227152Clytia hemisphaericaexon
TCONS_00068769-exon-scaffold_49-1491911889:227517..227545TCONS_00068769-exon-scaffold_49-1491911889:227517..227545Clytia hemisphaericaexon
TCONS_00068769-exon-scaffold_49-1510915933:227517..227545TCONS_00068769-exon-scaffold_49-1510915933:227517..227545Clytia hemisphaericaexon
TCONS_00068769-exon-scaffold_49-1575043694:227517..227545TCONS_00068769-exon-scaffold_49-1575043694:227517..227545Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:226787..227545 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.19922	9.28359	5.66087	0	0.37051	2.72632	3.36666	0.69877	3.67081	1.91612	4.37386	6.68147	1.61696	3.71247	6.92442	5.40105	0	1.37109	6.55643	1.56459	1.39167	8.50091	13.7747	3.53998	0.83466	0	0.224389
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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