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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068750 ID=TCONS_00068750|Name=TCONS_00068750|organism=Clytia hemisphaerica|type=transcript|length=2343bp
TGTATTTTGTGAAGAGTCGTTTGATGGAACGCTTGATTGCTTTCGAATGA
GAACCCACAGGTGCTGCTCACCCTCTGCATGCTTCCTTACCTCATCTGCT
GCAGTTTTTCCCATTCttgcaaaagcatttttttgttgctgcaacaaaaa
tttcagatttcaatcttcaccaaaatatttttttataaaattggtGTAAA
GAAGAGAGGTGGTTGTTGGAAGCAAAGATGCATAAGATTTGCTTGTTAGC
CGTACTTTTTGCGGCGGTCTATGCTAGaccatattttgaccaaaacagTG
AGTCACACTTCACTGTCCACGAGAAACCACCAGAACTTGTTGTCAATGCT
GGACCAGAAGGAGTCAAAGTCCAAGCTAAACCATCCAAACTTCAAGTTGT
TGAATATCCAGGACATCAAGTTGCTGCCCAAAAACGCGATGATATCACCA
ACTGTTACTTCGGTGGTGAAGGTTGTGGTGGACACGGTGGCCTCGGTTTA
GGAGGCTATGGAGGCCACGGATTCGGTGGCGGATATGGCGGTCACGGCTT
AGGCGGTGGCTATGGCGGTTATGGCCACGGTGGTGGTTATGGCGGAAATG
GAGGCGGTTATGGCGGTGGTTATGGCGGAAATGGAGGCGGTTATGGCGGT
GGTTATGGCGGACACGGCTTCGGTGGTGGATACGGAGGATACGGTGGTCA
TGGATGCGTTGGACATGATTGTGCATTCAGCGGATGTCTTTACAATGGAG
GTGGTTACGGATGTGGCGCCCACCACGATCACACCACATATGTGCCATCA
CACACTCCCCCCGTTCACGTTGGTCCAAACGCTCCACCAATTCACGTTGG
CCCACACGTTCCAGCTGTTCATGTCGGACCACATGTACCAAGCATCCATT
ACGGTACTCATGCTCCATTATACCATGTTGGACCACACGTTCCATTCGTT
CACATGCCACCACCTGTTCACACTGTCCATGCAGGACCCATGGGACCACC
AGTGCACGTCACCTCACCACCAACCGTTTACCATCAACCACCAGTTGTCT
ACCATCAACCTCATGTTGTTGGACATGCTGCAGACCACGACTTCGGACAT
CATGTTGGAGTTGGAGGAGATTATGGAGGTCATTACGGATCTGGATACGG
ATGGGGAGGTCACGGTGGATACGGAGGATATGGCGGCCACGGATTCGGTG
GTGGTTCCGGTGGTGGTTTCGGTGGTGGCTATGGAGGTGGCTATGGAGGC
CACGGACTCGGTGGCGGATATGGCGGCCACGGCTTGGGTGGTGGTTATGG
AGGTTATGGCCATGGTGGTGCCGGTTATGGTGGTTTGGGTGGTCATGATG
GAGAATGCTGTGAAGCTGGAGGTTATGGTCATGGATACAAGAGAGCTATC
AAACAAAAACGATCGATTGAAGGTGAGTCCAATGAATCTTCTTTTGACGA
AGACAAACAAACCACAACTGACTTGACTGAGAAGACGAATAACATCCAAA
AACGTGACGCTCCATATTACGGTTGGCATCCATTCCCTGCTAGTGTTCAT
GTTGGTCCCCATACTCCACCCATTCACATCGGTCCCCACTACCCACCTGT
ACATATTGGACCCCATGTCCCTGCTGTCCATATTGGTCCCCATGTCCCTT
ACATTAACATCCCTGCTCATGTACCAGCTATTCACGTCCGTCCACACGTC
CCCGCTGTCCATATCTCTCCCCCAGTCCCCATCATCAACGCAGGCAACCA
CGTTCCATCAGTGCATGTCACCTCACCACCAACAGTGTACCACAGACCAC
CCATTGTCATTCATCAACCTCATATTGTGCACGGTCCCCTTCACCACGAT
TACGGTCACGAAGTTTACGGTAACGGTTTTGGCTTTGGTGGTGGTTATGG
TGGTGGTTATGGTGGTGGTTATGCTGGTTATGGTGGTCATCAACATGGAC
TCACCATGGAGCATGATGGTGGTTTTGGACATGGATGGGGTAAAAGAAGC
GACATCCCTTCATCACCAGCTGAAAGTGctTAAAGCAGTTGTCCACGCCA
ACATCAGGCAGTCAGAAAAGCTACGACTGGAGGTCATAAGGTGAGAACGC
ACCGAAAGATCTATCCAGCACCACAAGAGGCTTCCAAGACTCTGACGACT
GTATCTATTAGCAACAATCACTACGAATCTTTTATAAATAACATagcttt
atttttaaaatcctGTAAATTTATAATTCTAAACAAAGAAATTATGATAT
GTTTCATaaactttttctctttaaaCTAAATCTTCGTCTGAAATTTTCAT
CGATGCTCAagttgaaaaattgattttccttCTCTTTTTTTCA Run BLAST on NCBI transcript from alignment at scaffold_49:130931..137540+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068750 ID=TCONS_00068750|Name=TCONS_00068750|organism=Clytia hemisphaerica|type=transcript|length=6610bp|location=Sequence derived from alignment at scaffold_49:130931..137540+ (Clytia hemisphaerica)
TGTATTTTGTGAAGAGTCGTTTGATGGAACGCTTGATTGCTTTCGAATGA
GAACCCACAGGTGCTGCTCACCCTCTGCATGCTTCCTTACCTCATCTGCT
GCAGTTTTTCCCATTCttgcaaaagcatttttttgttgctgcaacaaaaa
tttcagatttcaatcttcaccaaaatatttttttataaaattggtGTAAA
GAAGAGAGGTGGTTGTTGGAAGCAAAGATGCATAAGATTTGCTTGTTAGC
CGTACTTTTTGCGGCGGTCTATGCTAGaccatattttgaccaaaacagTG
AGTCACACTTCACTGTCCACGAGAAACCACCAGAACTTGTTGTCAATGCT
GGACCAGAAGGAGTCAAAGTCCAAGCTAAACCATCCAAACTTCAAGTTGT
TGAATATCCAGGACATCAAGTTGCTGCCCAAAAACGCGATGATATCACCA
ACTGTTACTTCGGTGGTGAAGGTTGTGGTGGACACGGTGGCCTCGGTTTA
GGAGGCTATGGAGGCCACGGATTCGGTGGCGGATATGGCGGTCACGGCTT
AGGCGGTGGCTATGGCGGTTATGGCCACGGTGGTGGTTATGGCGGAAATG
GAGGCGGTTATGGCGGTGGTTATGGCGGAAATGGAGGCGGTTATGGCGGT
GGTTATGGCGGACACGGCTTCGGTGGTGGATACGGAGGATACGGTGGTCA
TGGATGCGTTGGACATGATTGTGCATTCAGCGGATGTCTTTACAATGGAG
GTGGTTACGGATGTGGCGCCCACCACGATCACACCACATATGTGCCATCA
CACACTCCCCCCGTTCACGTTGGTCCAAACGCTCCACCAATTCACGTTGG
CCCACACGTTCCAGCTGTTCATGTCGGACCACATGTACCAAGCATCCATT
ACGGTACTCATGCTCCATTATACCATGTTGGACCACACGTTCCATTCGTT
CACATGCCACCACCTGTTCACACTGTCCATGCAGGACCCATGGGACCACC
AGTGCACGTCACCTCACCACCAACCGTTTACCATCAACCACCAGTTGTCT
ACCATCAACCTCATGTTGTTGGACATGCTGCAGACCACGACTTCGGACAT
CATGTTGGAGTTGGAGGAGATTATGGAGGTCATTACGGATCTGGATACGG
ATGGGGAGGTCACGGTGGATACGGAGGATATGGCGGCCACGGATTCGGTG
GTGGTTCCGGTGGTGGTTTCGGTGGTGGCTATGGAGGTGGCTATGGAGGC
CACGGACTCGGTGGCGGATATGGCGGCCACGGCTTGGGTGGTGGTTATGG
AGGTTATGGCCATGGTGGTGCCGGTTATGGTGGTTTGGGTGGTCATGATG
GAGAATGCTGTGAAGCTGGAGGTTATGGTCATGGATACAAGAGAGCTATC
AAACAAAAACGATCGATTGAAGGTGAGTCCAATGAATCTTCTTTTGACGA
AGACAAACAAACCACAACTGACTTGACTGAGAAGACGAATAACATCCAAA
AACGTGACGCTCCATATTACGGTTGGCATCCATTCCCTGCTAGTGTTCAT
GTTGGTCCCCATACTCCACCCATTCACATCGGTCCCCACTACCCACCTGT
ACATATTGGACCCCATGTCCCTGCTGTCCATATTGGTCCCCATGTCCCTT
ACATTAACATCCCTGCTCATGTACCAGCTATTCACGTCCGTCCACACGTC
CCCGCTGTCCATATCTCTCCCCCAGTCCCCATCATCAACGCAGGCAACCA
CGTTCCATCAGTGCATGTCACCTCACCACCAACAGTGTACCACAGACCAC
CCATTGTCATTCATCAACCTCATATTGTGCACGGTCCCCTTCACCACGAT
TACGGTCACGAAGTTTACGGTAACGGTTTTGGCTTTGGTGGTGGTTATGG
TGGTGGTTATGGTGGTGGTTATGCTGGTTATGGTGGTCATCAACATGGAC
TCACCATGGAGCATGATGGTGGTTTTGGACATGGATGGGGTAAAAGAAGC
GACATCCCTTCATCACCAGCTGAAAGTGGTAAGAAACAACTCACATTAAA
AGCTTTTTCACGACGAAGACGTCAATTAATGGGAGGAAATACTGATGGGA
GTGATTCCGTCATTTTCGTTCATCCTGGAGGAGGCCAAACTCCAGTCAGT
TCTGGTGCTCAGCTGAACACTCAACTTAACAATGATAGTCCTTTAGCTGG
CTTGATGCCAAACCAAGGGCAATCTAATGCAGCTATTCACACTCAATCAC
CTCCACAAATGGAAACTCCAGCTCTTCCACAACAAAGTCAAAATCAGGCC
TTCACCAAGTCTGGCTTGTCCAATCTTGGTTCTATTACCAACTCTATGAG
CAACAATGCTGATCGTGATCGAGAGCTCCAGAATCTGGTCGGTAGCCTAT
CAGGAGGTCTCAGTGGAGGTCTTTCTAACGGAGGATTACCAGCAGGTTTG
GGTAACCTTGCCAACCTTGCTCAACAATCCAACTCCAATGGCAACACCAT
GGAAGTTCAAGGAAGTCCACAACAAGAGCCTTTGAACATCCAATCATCCG
CCCCTCAACATGATGAAGGTGTCCAGAGTGAAAGCCCCAACATGAACATC
GGTGGATTGCAAGATGGTGGAAACTACCCAGAAGAAGCGCCTCACAACGA
GGAACCACCTCATGGAGAGGAACAATCAGAGGGTTCCAATAATAACCAAG
GTAACGATTACCGCAGATCGGGCGTTCCCACCCAAGAACACGCCTCTTTC
TATGAAGATGAGGCTGATGAAGTTGACGATGTTGATGACTCCATGGAACG
TGACACGAAATCCACCATCCCACACGAAGATGACGATTTCATAGACANAA
CGCGACACGAAATCCACCATCCCACACGAAGATGACGACCTCATAGACTA
TGACATTCACGAACGTGTCCATAAAGACGTTATTCCGAGACCGGAAGATT
TTAACTAACTTTGACAAGACTATGACTGTATGACGAGTTGACTTAACTTA
AGGTACGCTGAAAGCCTTGAATGGTcaaagaagaaaagtttgaagagtGT
AGTTGAAGTAATAAACCCTTGACTTCCACTTTTTATCTATTTCTTAATAA
TAGTCTTCCCTTTCTTTCTTTTAGTCATAGCGTACTTTTTATCTTACTAA
ACATATTCAAGTAATTCTTTTGACACAATATCAGATAGTTTAGAAAGGGT
TTATTACTTTCGCATACGCACAAACAAAATCACACACACAAACACACACA
GCATGTCATACATCATTCAacaccgcactgtcatcatcaTGGTCAATTCC
AATCCAACCACAGACCCAATGAGGCGCtgatttcaccaaaattttcaaaa
taagcaCAGTAATATCATGTTGAGGGGCGGAAAGATCTGACGAAACATCG
CTAATTCATTGGGGCTGTAACGGGAGAGGAATCTAGAACCAAGATGGCGG
CTTTGCGTTTTGGTGATATTGTCCGCCTACagacttttcttctttttcct
tcaTTTTCCTGGAAATCTCAATTTACATACATTAACATTTTACACAATGA
ATTCAACTGAAAATTGGttaaaaatatgattaaaaataatctgaaaaaga
CTTATCCGACTTTTTATCTTAGCATACCGTCTGCTTTTTAAACGAAGCCA
CGTATCAATAAAAACTCttacattttttatctttttagctTAAAGCAGTT
GTCCACGCCAACATCAGGCAGTCAGAAAAGCTACGACTGGAGGTCATAAG
GTGAGAACGCACCGAAAGATCTATCCAGCACCACAAGAGGCTTCCAAGAC
TCTGACGACTGTATCTATTAGCAACAATCACTACGAATCTTTTATAAATA
ACATagctttatttttaaaatcctGTAAATTTATAATTCTAAACAAAGAA
ATTATGATATGTTTCATaaactttttctctttaaaCTAAATCTTCGTCTG
AAATTTTCATCGATGCTCAagttgaaaaattgattttccttCTCTTTTTT
TCAAGGTTTAATAATTCTAATTTCTTTACATCTTTACATAAGATGAcaca
gttttgaaaaataaaaaaatttctacttttttaatgaaaagccAAAACTT
CATATATTTGGCATAAAAACacctctgtgtcacagacccgctgggactcc
cagccctactggaaaatttctcaaatatttcGTCCCCAGTGAGAAAATAC
cgtgaaatttcagccccattgagaatttgactttgatttcatccccattc
gagatCCAATGTTTAAGAAtagcactccaaaaccatcccactggattttt
taaccttggaacaatagaatatctatccccattgagatttcaataggaat
ttttatccccatttaggaaaaagttccaccggggctgtgagacaggggtg
tataaaaaCTTGAGATTTAAATAATGAGAGAGTTAAATAATGGTTTAAGT
ACCATTGGAAAGGTACTTTTAAACTATTAAAAAAATCCTTATTCTTTTAC
CTTTTCAATCAAATGTTCATAAAAGTTGCAGCTTTAAGTCTGACTGGGAC
AAGGTAAATTAGGCACTTTTGAAGGGTTTGAAGGGTTAATAATATTGAAC
TATCAAGTtgagaaaaatataatattgcCTTAAAATCCCTGGCAtgaaaa
attttatcattttttacaaatcatGCAAAAATAAGACaccccttctcgca
gacccacTGGGAGCCCTTCGCACTgtaaaaattgtccaaaatatgtcccc
ggtgggaaattatcctccaattttcgACCCACtgataataatcaaataaa
ccattcctcactgcaaaatattatgctatttttcacatccccactgaatt
ctctgtctttataaaacaaaataattgaaatccccagccataaaaaatat
gggaatatcaatccccattgagtttcagtcaattattttttatccccact
ggctaaaaaaagATTACCgcgtctgtgagaagggggtgtataataaagac
aaaaaaaatccCCACCGCCAGAAAACGNgctaaaaaaaatcttaccgcgt
ctgcgagaagggggtgtataataAGGACAAAAAAAATCCCCACCGccaga
aactaaaaaaaatccaTCACTGGATTAATAAAACACAAAGGTCTTATAAA
GAGTGACGGAACAGTAAAAATCTTCAttatttttacacccctgtctcact
caACAAATGAGCTTTAGCCAACCcaagaattttaaaaatataaaacacaa
aaacaaaacaaaagtgctagattcaatctgtcatccGAAAAAAAGCACAA
ATTTTAAGACATCTTTTTTGTTTGCCTAGATAAAGGTTACGGATACCCCT
CTACAATACTGGCCAAAAGTAATGGAATTCCTCGCTTTTTGGTATGAATT
CACAAGTTCCCCTCCCCCCTTATACAATGTTGAATTTCAGTCCAACTTGA
CTCAACAACATTGTAGAGAGAGGGAAGGGGGAGAGGAGTAAAAAAACAGT
AGAATAGATGGGATTCCAATTACATTTGACCAAGATTGTAGCTTTCAGCT
TGAAATTCAATGACTCAACCTCCCCTTGTTGGAAAAATCATCCCCAGTGG
AAATATAACTCTTATGAATTTTACCCAGTTTAGAAATTGAATGTAAAACT
GCACTTCTAAAGAATTCCAGTGGCGTTTTTAGATGGAAATAATAGATTTT
ATCCTATCTTCAATGACTTTGATTAAGATACGAGAAAATGTTCTACTGAG
GACAGTATatgattttttatcaaattttctgtTGCTAGTTGAGGCTAGTT
GAGGTGGATAGATTTTCGAACGTCATGTAATATTTCTAGCTATttgattc
gtcaaaaactagcaTGTAACGCTCAATCCCAACTCACCTAGCCGAGCCAG
CGCGCTTCCATATGAAAAGCCCCTAAGGGATGGAAATACTGTCATTTAAT
CATACTGATAGATTCTGAAGCACTCACAACCATAAAACTCCTCTCTATGC
TTTTTTTTATGTCTAGACTTTGCcggatttttataattttcacttctttg
ttgatattttcagaggttaaccctattcatactaggtttttaggggcggt
tcaaaactaggggggcttttcctgtcaCCCCTTAAActttttgatctagt
gggtctttttggatgaaatttagaaaaaaagacccttGTNAAATAATCTG
AAAAAGACTTATCCGACTTTTTATCTTAGCATACCGTCTGCTTTTTAAAC
GAAGCCACGTATCAATAAAAACTCttacattttttatctttttagctTAA
AGCAGTTGTCCACGCCAACATCAGGCAGTCAGAAAAGCTACGACTGGAGG
TCATAAGGTGAGAACGCACCGAAAGATCTATCCAGCACCACAAGAGGCTT
CCAAGACTCTGACGACTGTATCTATTAGCAACAATCACTACGAATCTTTT
ATAAATAACATagctttatttttaaaatcctGTAAATTTATAATTCTAAA
CAAAGAAATTATGATATGTTTCATaaactttttctctttaaaCTAAATCT
TCGTCTGAAATTTTCATCGATGCTCAagttgaaaaattgattttccttCT
CTTTTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068750-exon-scaffold_49-1491911889:130931..132958 | TCONS_00068750-exon-scaffold_49-1491911889:130931..132958 | Clytia hemisphaerica | exon |
| TCONS_00068750-exon-scaffold_49-1510915933:130931..132958 | TCONS_00068750-exon-scaffold_49-1510915933:130931..132958 | Clytia hemisphaerica | exon |
| TCONS_00068750-exon-scaffold_49-1575043694:130931..132958 | TCONS_00068750-exon-scaffold_49-1575043694:130931..132958 | Clytia hemisphaerica | exon |
| TCONS_00068750-exon-scaffold_49-1491911889:137226..137540 | TCONS_00068750-exon-scaffold_49-1491911889:137226..137540 | Clytia hemisphaerica | exon |
| TCONS_00068750-exon-scaffold_49-1510915933:137226..137540 | TCONS_00068750-exon-scaffold_49-1510915933:137226..137540 | Clytia hemisphaerica | exon |
| TCONS_00068750-exon-scaffold_49-1575043694:137226..137540 | TCONS_00068750-exon-scaffold_49-1575043694:137226..137540 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:130931..137540 + |
Blast
The following BLAST results are available for this feature:
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