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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068740 ID=TCONS_00068740|Name=TCONS_00068740|organism=Clytia hemisphaerica|type=transcript|length=3293bp
CATTTGTCGTTAGACGCCGTGGTGAGCAGACCACCTGCCACTTAAAATTA
AGCGATATGTTGCTACACTAGAGCGATTATGAAACGATTGATATCAAAAG
TGTTTGGCAAGTCAGTTATTCCTGATTTGATCATTCTACCATCACCTAAA
AGTCCGGCACCGACCACCCCTGACGACGGTTATCTAACGGGCGGTCAGAA
GGGGGGAACACCTTATTCGCCTCATTCTTTCATCACCTCACAACAAGAAA
GttccaacaaaaacaaattttttaaagGCAGCAAAAGATTTACACTCAGT
TCACAGAAATCTTCGcgaaaaaacagcaaaaactcTCCATCGCAAATCAA
GAAGGCGTTGAAGGCGGTTGAAACGTCACCAAAAGTTTCCTCCAAACCGC
CTTCTGTGGTGGAAGTACCTGTTGAACTACCCAAGAAAGAGACGCACACA
AAGCAAGACGATCGAAACAAGATGGATACTTTAACAAGGGAGGAGATTAG
TGACCTCAATGATTTGTTGTCTATGTTCGACGAGAAAGACAGCCCGCGCG
GAGGAGCCGGTTCGCCTGTTCAACAACCACCAACGAATTACTTCAAGAGC
AAAACGCTTGAAcgaaaatcgaaattgaaaACACCTGCTCAAAAATCTGT
AGAAGACATCCCGGTTGCTGAACCGATATCAGATACAACTGAGAAACCGT
CTAAAAGCAATATTCCGAGAACACAAAGCCAAAATTACGGTCGCCGAACA
GAGGAGCAAGGTGAAGCGAGTGTACCAAGGCGACCAATGGGACGATCGCA
AACTATGACACGTGCTGCAAGAGGCGCTTATACAAAATCGCTAGACAGAG
AACGAGCCAAGAAAGaaaCGAAAAAAACGGACGATTTGGACTTTCTTCAA
GACGTCGTTAGTGAATTGTTAGCCGTCGGGAAAGTCGAGGGACCTGTCAT
CGATACAAAACCGAATCAAAGAACAAAAAGCGATTCAATCGATTATCCGA
CTCGCATTCCTCGTAGTGTGAGCAGTATCGATAATTTCTTTGACGATATA
AAACTTCAAACAGATAGCTATTCGAAAAATTTGGACGTCGAAGAGGACGA
ATCGACTTTGAGCGAGGGGGAAAACGATATTTTCTCGACTGAAGGGAATG
ATTCGGGCATCGAAGACGAAACTATGCCAGGAATCACAAAAGAATCTTCT
CACAAACGAAGATCTTCCAGTAAGCATCGAAAACATCACGATGATGGTGA
AGAAAATCGTTCTTCCAAACGCGATAAAGATCGAGTGAAACGATCCGAAT
CGGATTCTAAAAAATCGAAGAAACATCGAAAACACGAATCAGACTCGAAG
ACGAATTCTTTACCAAGATCTGAGAAACACAAAACTAAAAGTAACGGAGA
TGTCACCGTTCGAATCGATGGCTTTGATTATAATTCTGACACTATTGGGC
GCCACGGTCGGCCAAAAGAGCGCCGCTCTGAACCACCACTTCCCACAAAA
CCGCCAGTGGATCAAAAAGTAAAGCACAAAAGTCGTAAAAGTGAACCCAC
ACTGAGCCACCATCACAAGTCTCGCCACCAGAACGATCTGAATGGTGGTC
AGATTGGACATCAAGAACGTTCAATGAGTGATAGCCATCGACATGATCGA
TCAAAATCTCCCGATAAAAAAGATCGATCCAAGTCACCATCCAAAAATAC
CACAATAAACGTTCGGAGTGGTGATCACAGGAGGCCGGAGGGTGCCGAAA
ACCATCGGAACCATAAGTCGAAAGAACACAAGTGGGACCACCCTTCTAAT
GGAAGACATCATGTTTACAGTCAACCGAAAAATGAAGACCCAGGGCCTCT
ACCAAAGAAAGATAAATTTCGAGATTTCGACAACAACATTCGAAGTATGG
TTCGAGGGAAAGACAATGACCCTGATCTCGTCGAGAAGTTGGGCGTTACT
CCTGACATCCTAAAACTTTTacgagaagaagaaaaattctggCAACGCCA
GCAAGAGTTGAAAGAATGGCGTCAAGCAAAAGACTCAACTTATGAACGCC
CACCGCCGCCTTCCAACTACCAATCTCGCTCAAATTACGCCCCTAAAGCG
CCCGTATCTTCGACCAATCAAAGTGCAGAACGTGATGCAGAAATTCTGCG
AGAAGCTGCAGAAAACCGTTTAGCTTTGCAGGCTGAAAAACTGATGAAAG
TCCGTGCAGAACAGGAACATATCTTGAGACAGTCACGTGAGAACTTATTA
GATGAACCGGACATTGCACGCCCACCTCCGCCCAGAAATTACAAATCATC
GGCGCGTTCATCAAGCTCAGGACATTCGCATTCTCAAACTACCAATACTC
GTTCATTCCCTACAACACCCACATCACCTGCGAGAGAGCACGCTTATCCT
TCATATCCACAATACGCAAACCTTCCTCACACACAACCCGAACCACCACC
TGTCAACAGAACAAATAAACACTCACATCACGAAGTGGACCAGCGTCCAA
AAGGTGCACCATCTTTAGGAACCGCTTTTTCGGATGATGATGACGTCTTC
AACGAAACCCGTAAACAAGCGACAATGGATTATCGGGGTTATTTTTCGGA
TGATGGGTTCCGGGATAACACCTTATCGAAAACATACTTAGCTCGACCGA
TGTTCCGGCAACCGAATCAAACACTGCGTTGCGCTCATTGTTCGAATCTC
ATTAAAGAGAATCGTGTGATGTTTGTAGATTCACAAAATTATTACTGGCA
TCAATCGTGCTTTCGGTGTGTGGTCTGTCAAGCGCTGTTGAATGATAGCA
ATGCCATCAGAGTGCGAATGGTTGGTTCGAAACTTCATTGCAGATTCTGC
ACCACAGCTAGAGATGaaGACCACACATTGATGTCCGAAGTGTGAATTGA
CGCATGCGCAAAGAGACTCGAACGGGAAGGGTAGAAATTATAGTTTTTTA
CTCTCAATTTTTATCCATTTGAATATAGCTCTAACCACATTTTCTAGGAG
TACATGATATATCCGAGGAACCAACCCCCTTTAATTAAATGCAGAATTAC
TCAGAACTTCAAATTCAATTCCACGTCTTTTTGTGTTTGACCTAACTGAG
GTTAGGTAGTCTTTTAGAGGGTGCTTTATAAAAtggaaaatgaatatttt
tgataaatatgtaaATACTTTTATGGAATataatatttgaatatttaGCT
CATTTATGTATCATAGTCaattaatttttgtattttcacaaaaaagaaga
acttagTAACTCAACAATTTAAACATTTACAATGCAATGTCAC Run BLAST on NCBI transcript from alignment at scaffold_49:69036..75772+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068740 ID=TCONS_00068740|Name=TCONS_00068740|organism=Clytia hemisphaerica|type=transcript|length=6737bp|location=Sequence derived from alignment at scaffold_49:69036..75772+ (Clytia hemisphaerica)
CATTTGTCGTTAGACGCCGTGGTGAGCAGACCACCTGCCACTTAAAATTA
AGCGATATGTTGCTACACTAGAGCGATTATGAAACGATTGATATCAAAAG
TGTTTGGCAAGTCAGGTAGTTTATTGTAGTGATCAAATATAGTTcaattg
tcaaatttgtctTAAATTCTTTGCTAACGCTCGGAGATTCATACTATTTT
ATAAGTAAGATTTCAAAAACTctgttttcctttctttttcagTTATTCCT
GATTTGATCATTCTACCATCACCTAAAAGTCCGGCACCGACCACCCCTGA
CGACGGTTATCTAACGGGCGGTCAGAAGGGGGGAACACCTTATTCGCCTC
ATTCTTTCATCACCTCACAACAAGAAAGttccaacaaaaacaaatttttt
aaagGCAGCAAAAGATTTACACTCAGTTCACAGAAATCTTCGcgaaaaaa
cagcaaaaactcTCCATCGCAAATCAAGAAGGCGTTGAAGGCGGTTGAAA
CGTCACCAAAAGTTTCCTCCAAACCGCCTTCTGTGGTGGAAGTACCTGTT
GAACTACCCAAGAAAGAGACGCACACAAAGCAAGACGATCGAAACAAGAT
GGATACTTTAACAAGGGAGGAGATTAGTGACCTCAATGATTTGTTGTCTA
TGTTCGACGAGAAAGACAGCCCGCGCGGAGGAGCCGGTTCGCCTGTTCAA
CAACCACCAACGAATTACTTCAAGAGCAAAACGCTTGAAcgaaaatcgaa
attgaaaACACCTGCTCAAAAATCTGTAGAAGACATCCCGGTTGCTGAAC
CGATATCAGATACAACTGAGAAACCGTCTAAAAGCAATATTCCGAGAACA
CAAAGCCAAAATTACGGTCGCCGAACAGAGGAGCAAGGTGAAGCGAGTGT
ACCAAGGCGACCAATGGGACGATCGCAAACTATGACACGTGCTGCAAGAG
GCGCTTATACAAAATCGCTAGACAGAGAACGAGCCAAGAAAGGTatgctg
aattttttttcatcctttactactcaaaatctttgaagtcATCAATTTTT
ATTATCTTACGTCCTATACATTTTAGATTTAACATTTTaatctttttcat
aacttttttttaccacaagtTTGAGGAGTTTCTTATCGTCATCTTGTTGA
TATCAATCGCTATTTCCTTTAACCTTTAACCATCCCAAAATTGACTTTAT
TCATAACTTTcgcatttgtatttttttctactCTGGTGTTATCTCTTGAT
TTGCTTACACTGTCAGCTTTTGGACCATTGTATGACTCGGGCTTTGGTTG
CAATTTTACTTCAATCCGAGTTCTTGTACGATAAATgattaagaccatgt
tcagacttTACGGTTTGGAATCGTTCCGAACCATACCGGAACGATGCAAA
AGCGTAACGTCTGTACATGGTCTAAGTGTTTATTCCTAGACATGAATTAT
CAAGCTTTtcactttaaagtttttttggttttttataTTTGGTTTTTAGA
ATTGGTTTTAGAATTTTAGAATTGGTTTTCTAGAATGGAAAACGAGATTC
AAGCTTAAAAGACCAGTAGAACTATATTCATCTCTCGCAATACTTCAATT
CGTGTCACAAGCTTCTGATCGACTCTCAAATCACTCTGTAATACGAGGAC
CTTTTGATGACAAAGAAATTCAATCTCCCATCGTTTGAAAGTGTATCAAC
TGtgagagaatttgaaagaaagAAGGAAAACAAAATCGTTGTTGTATCAA
TCGGAGTGAGAGCGATTCTGCTTGCTTAGTTAGTGTATAATATGACACAG
TCTAGTTCGTAAAACTGCGAGTTTTAATGTTCTTGTACATTGCGTGTTTC
TCAGGCTAGTGTTTGCATTATTTGTTACGACGAGTCTAATGTTCTTGTAC
ATTGCGTGTTTTCTCAGGCTAGTGTTTGCATTATTTGTTACGATGAGTCT
ATATTTGCATGGACACTTTAAAATTGTTGTTGATTTTGGAAATGAAACTT
TTGGagtatttttgtttgaaaagatTTCGTAAGAGAAGAGAGGTAGATAT
TTCTTGATACAGTAATCACAGGAGTTGCGTTTTGAGTTCAAGCGGTAAGG
CAAAGGAATTGAATTTTATTCGAAGGGGTTGTTTAGCGTGTTGGTTCTAT
GTTACGTTTTGTGTCGATGAAATCTTTTTGCTAATTGATGGGTTTTGtac
ttttggaaatattttgagttGCTCCTTCGAAGAGATTGGGATGTTTTATG
GGAAGCCATTTCGTCCAATACTGTAGTTAATATATAAGATAAGGACTTGC
aagattacacgtttttttgtaagaacatccaaagtatAATGCtattaact
ttttgggttttgttttttagcctaaaatgttctttacatgttcttatttt
caccattttgcgaccatttttcctattttcctaagaaattgggtgttttc
gagtccgcaaagccttaaaatgttcttaacattttccccatcgaagcctt
atgttttttatacagttagttcttataaaaaacgtgtatattctATCCCT
TTTACTACCCATAATCCTAGAACACGAGTCTTAtataaatcttcaatttt
tttatcctcGGAAGATGAAAGCGAAAGTTGAAGCGATTGACATGAAGTCA
CGACTTCCTTTTAAACAGTGATCATTTCTCTTAATTGTTCTTCATAATTC
AAATTCTTTGCAATTTGTACTTTCAAAGCATCGAGGAGGGAGAGCCAATT
ATTTTGTTTAATGGGAACTTAATTGATGCTTTGCACTCCACCGTTGAGTT
GTTCTTCAAGAAAGTGGAAACATTTTGTCAATACAATTTCGAAATTGTTG
GAGATTTTTGTCGGATCATGGTGAAGTGGGAGTTTTTAAGAATCAATCAT
TTTGAACTTGTGTTTTGCTTAGCATTTTTTGGTGGTTGAAAGGGtgaaat
ctttttctttcagGAATTTGATATAACATTGGTTTTGCATTTTGAGTATT
CGAAGAGAGATTATTTTCGCCAACTGTTTCTCGAATTTCACgcgatttga
aagatttttatgaAGTGTTTTTGGAGAGTCTACCGTATGTATGTGAGATA
GAAATACTCGAACCTTATTTTGGTACAGGAGGCACTCACTTGGCTAAGGC
CTTTACTAAAGCAATGAACTGTTATCTTGTTTTCGATATTGTTTACACTG
CAACATTTTCCCTATCACAGAATTTCATCTTCGATTTTTAAGAATCATGA
AATATGCTTTGTTGTACATAATATTGATGATAATGATCGTAGTTATTTTC
ATTCAATGTTTTTCGTCTATTATTGTTTAATTGCTTAATTAAGTCGCTAA
TGATCTGGTGCATgtcaaaacacgtttttttataagaacatccacaaaTT
TTGAAACCCCTAagccaaaaatgttcttattttcaccattcttGCTTATT
TTCCTAAGATATCGGGTGTTTTAGactccgcaaagccttaaaatgttctt
aacatgttcttaagattttggccattgaagccttgtgttcttatatagtt
tgttcttataaaataaaaacgtgtatcttgAGAAAAGGACTCGTAAAATA
TTGCTTAGTTTCGTTTTCCCGAGTTGTATGACGTCATGTTTTAATCGAAA
GAAAGTCCATTGGGACAGGACATTGACATTTTAGCGTTGTCTGCACTTGA
TAAGAAAATCCAATTTATAGAAAccatgtttttataagataatCCATTTG
AGAATTGTATACCGTCATCTTTAATTAAACCTCCCTCTTTTAATTGAGAT
GTGTTTTGTGATTTAaaacttctttttattttgttgtttttttagaaaCG
AAAAAAACGGACGATTTGGACTTTCTTCAAGACGTCGTTAGTGAATTGTT
AGCCGTCGGGAAAGTCGAGGGACCTGTCATCGATACAAAACCGAATCAAA
GAACAAAAAGCGATTCAATCGATTATCCGACTCGCATTCCTCGTAGTGTG
AGCAGTATCGATAATTTCTTTGACGATATAAAACTTCAAACAGATAGCTA
TTCGAAAAATTTGGACGTCGAAGAGGACGAATCGACTTTGAGCGAGGGGG
AAAACGATATTTTCTCGACTGAAGGGAATGATTCGGGCATCGAAGACGAA
ACTATGCCAGGAATCACAAAAGAATCTTCTCACAAACGAAGATCTTCCAG
TAAGCATCGAAAACATCACGATGATGGTGAAGAAAATCGTTCTTCCAAAC
GCGATAAAGATCGAGTGAAACGATCCGAATCGGATTCTAAAAAATCGAAG
AAACATCGAAAACACGAATCAGACTCGAAGACGAATTCTTTACCAAGATC
TGAGAAACACAAAACTAAAAGTAACGGAGATGTCACCGTTCGAATCGATG
GCTTTGATTATAATTCTGACACTATTGGGCGCCACGGTCGGCCAAAAGAG
CGCCGCTCTGAACCACCACTTCCCACAAAACCGCCAGTGGATCAAAAAGT
AAAGCACAAAAGTCGTAAAAGTGAACCCACACTGAGCCACCATCACAAGT
CTCGCCACCAGAACGATCTGAATGGTGGTCAGATTGGACATCAAGAACGT
TCAATGAGTGATAGCCATCGACATGATCGATCAAAATCTCCCGATAAAAA
AGATCGATCCAAGTCACCATCCAAAAATACCACAATAAACGTTCGGAGTG
GTGATCACAGGAGGCCGGAGGGTGCCGAAAACCATCGGAACCATAAGTCG
AAAGAACACAAGTGGGACCACCCTTCTAATGGAAGACATCATGTTTACAG
TCAACCGAAAAATGAAGACCCAGGGCCTCTACCAAAGAAAGATAAATTTC
GAGATTTCGACAACAACATTCGAAGTATGGTTCGAGGGAAAGACAATGAC
CCTGATCTCGTCGAGAAGTTGGGCGTTACTCCTGACATCCTAAAACTTTT
acgagaagaagaaaaattctggCAACGCCAGCAAGAGTTGAAAGAATGGC
GTCAAGCAAAAGACTCAACTTATGAACGCCCACCGCCGCCTTCCAACTAC
CAATCTCGCTCAAATTACGCCCCTAAAGCGCCCGTATCTTCGACCAATCA
AAGTGCAGAACGTGATGCAGAAATTCTGCGAGAAGCTGCAGAAAACCGTT
TAGCTTTGCAGGCTGAAAAACTGATGAAAGTCCGTGCAGAACAGGAACAT
ATCTTGAGACAGTCACGTGAGAACTTATTAGATGAACCGGACATTGCACG
CCCACCTCCGCCCAGAAATTACAAATCATCGGCGCGTTCATCAAGCTCAG
GACATTCGCATTCTCAAACTACCAATACTCGTTCATTCCCTACAACACCC
ACATCACCTGCGAGAGAGCACGCTTATCCTTCATATCCACAATACGCAAA
CCTTCCTCACACACAACCCGAACCACCACCTGTCAACAGAACAAATAAAC
ACTCACATCACGAAGTGGACCAGCGTCCAAAAGGTGCACCATCTTTAGGA
ACCGCTTTTTCGGATGATGATGACGTCTTCAACGAAACCCGTAAACAAGC
GACAATGGATTATCGGGGTTATTTTTCGGATGATGGGTTCCGGGATAACA
CCTTATCGAAAACATACTTAGCTCGACCGATGTTCCGGCAACCGAATCAA
ACACTGCGTTGCGCTCATTGTTCGAATCTCATTAAAGAGAATCGTGTGAT
GTTTGTAGATTCACAAAATTATTACTGGCATCAATCGTGCTTTCGGTGTG
TGGTCTGTCAAGCGCTGTTGAATGATAGCAATGCCATCAGAGTGCGAATG
GTTGGTTCGAAACTTCATTGCAGATTCTGCACCACAGCTAGAGATGGTGA
GTTTTCTTTGAGATTTCTTTTCCAAAAGGAATCGAATATGACGTAGGGTT
GCCTATAGAATCTATAAAAATTGTCCTGTGTCATGAGAATTAAATTTTCT
CTGAATAGCACACccgctatgcaaacgtcataattattactttcaacatt
tgaccgaaattcaatcccacaatccttttcatcttgattcgtaatgcgtg
caagttactacttttgtattgtcaaaaagtgtaattgacttgcaaaagca
attaatgcaaaggatgatgggattaaaactcggacaaacagtaattttga
tgtctatCTTTAGAAtcactgcggtatgctattGTCACTCCCACTATCAA
ATTCCAAATCGTAAATAAGGAAAAGCCAatgactttgaaaaaaattctcc
ctGTAACTCAATATATCGTTTCATATCAtttaatattcttatttttcttt
caatttttagaaGACCACACATTGATGTCCGAAGTGTGAATTGACGCATG
CGCAAAGAGACTCGAACGGGAAGGGTAGAAATTATAGTTTTTTACTCTCA
ATTTTTATCCATTTGAATATAGCTCTAACCACATTTTCTAGGAGTACATG
ATATATCCGAGGAACCAACCCCCTTTAATTAAATGCAGAATTACTCAGAA
CTTCAAATTCAATTCCACGTCTTTTTGTGTTTGACCTAACTGAGGTTAGG
TAGTCTTTTAGAGGGTGCTTTATAAAAtggaaaatgaatatttttgataa
atatgtaaATACTTTTATGGAATataatatttgaatatttaGCTCATTTA
TGTATCATAGTCaattaatttttgtattttcacaaaaaagaagaacttag
TAACTCAACAATTTAAACATTTACAATGCAATGTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068740-exon-scaffold_49-1491911889:69036..69150 | TCONS_00068740-exon-scaffold_49-1491911889:69036..69150 | Clytia hemisphaerica | exon |
| TCONS_00068740-exon-scaffold_49-1510915933:69036..69150 | TCONS_00068740-exon-scaffold_49-1510915933:69036..69150 | Clytia hemisphaerica | exon |
| TCONS_00068740-exon-scaffold_49-1575043694:69036..69150 | TCONS_00068740-exon-scaffold_49-1575043694:69036..69150 | Clytia hemisphaerica | exon |
| TCONS_00068740-exon-scaffold_49-1491911889:69278..70027 | TCONS_00068740-exon-scaffold_49-1491911889:69278..70027 | Clytia hemisphaerica | exon |
| TCONS_00068740-exon-scaffold_49-1510915933:69278..70027 | TCONS_00068740-exon-scaffold_49-1510915933:69278..70027 | Clytia hemisphaerica | exon |
| TCONS_00068740-exon-scaffold_49-1575043694:69278..70027 | TCONS_00068740-exon-scaffold_49-1575043694:69278..70027 | Clytia hemisphaerica | exon |
| TCONS_00068740-exon-scaffold_49-1491911889:72881..74881 | TCONS_00068740-exon-scaffold_49-1491911889:72881..74881 | Clytia hemisphaerica | exon |
| TCONS_00068740-exon-scaffold_49-1510915933:72881..74881 | TCONS_00068740-exon-scaffold_49-1510915933:72881..74881 | Clytia hemisphaerica | exon |
| TCONS_00068740-exon-scaffold_49-1575043694:72881..74881 | TCONS_00068740-exon-scaffold_49-1575043694:72881..74881 | Clytia hemisphaerica | exon |
| TCONS_00068740-exon-scaffold_49-1491911889:75346..75772 | TCONS_00068740-exon-scaffold_49-1491911889:75346..75772 | Clytia hemisphaerica | exon |
| TCONS_00068740-exon-scaffold_49-1510915933:75346..75772 | TCONS_00068740-exon-scaffold_49-1510915933:75346..75772 | Clytia hemisphaerica | exon |
| TCONS_00068740-exon-scaffold_49-1575043694:75346..75772 | TCONS_00068740-exon-scaffold_49-1575043694:75346..75772 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:69036..75772 + |
Blast
The following BLAST results are available for this feature:
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