TCONS_00068720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068720
Unique NameTCONS_00068720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068720 ID=TCONS_00068720|Name=TCONS_00068720|organism=Clytia hemisphaerica|type=transcript|length=1715bp
TTGTACATTAAAAAAAGCAAAGTTGTTGATTATTGGAACTGAATTGGATT
GAAGTTTGCTTGGTGAGGAATTTGCCTGATCATCACACATTTTAATCTTA
AAGTCTTAAAGgatGATTgaatgttacaagttctgcgtATACGTGCAGCT
GTTGTCATTATTCACTGATTGGTGTGATACCATTTACTGTTTTTGAACTA
AAGAAGGAACATTCTTTGCGATAGCTCCGATAATTGGATCAAAAACGAGG
AGAAATTTTGTTTAGCCAATTATGGATAGTCTTCACGAAGTTTCATTGGA
ACAATGTCTTCCTTGGTTTAGTATTTTATCTTAAGTGCAGTGGATTCTGG
CTTGGAAATGATGTCTATTAGGTTCCCGAGAGTATTTTCTCTGAAACAGA
AAGTGACTACATGACATTAACATGATTGCAATGAAAGAtcagcctttaaa
gtttgaaacaaaCAAGAATAATTTGGCTGTAATTTGGgcaccaaaaaaag
tatttaaTTTCGAccttcagttttttttaatgtgttatattttattattt
acaaCCTATTCTATAATATACAATGTTCTAGGGTTTTTGTTCTCTACCAG
TAGATAAGCCTTAAAAAGTACACGCTTTTCGCACTGCTTTTCTATCCTAA
TGGCACTTTTGCATGCATTGACCAAGTCTAAGAAAATTCAGACTTGTTAT
ATTTCTATCAGCTAAAGgtgataatgtttttttttttcatactaGGCCTT
AcctaaaattgaatttttatgttAGAAAAAGTCTAAATTTCAAAGCTAAA
ATTACATGGAGGCCAGATGTTTAATCTTTATTTAAATGTATTGGTTGCGA
TCTTAATCTTAGATGTCAGGATTCTAGAGGACAAAACGCTCAATTTTAAC
AGCCTTTAAATGTAGTAATTTCGGAAATAACTGTCATTTATAGTGATATA
AattattaaaagtttttgtATTTTCCTAATCAATAGTCTCCACTATGGAG
ATTTCCCGTGGATCACAGAGCGCCTAAATATACCATTGTACTTTTTAAGG
CTTGTGTTTTTTAAGGCTTGTTAACTGGATtatgcagttttttttatcta
ttttgtttttACAATACAGATTGAATTTTGGGGTCTAAAGCAAAGGCCTA
TTGTTAAGAACAATGACGAAATAAGAGTATACTGACCCTCAGCGAAAAAA
GACTATTCctttaataaaaaaacatgtaccaggggggggggtcagtacta
aaatgtaagacatacatgagtactaaaaggattttcactaatttttgaca
tacccccacctatttatcgaaaatgttattttagtacatatgtactaaaa
ttattttgagcaatttaacatagataccacccattttttgcccttttacg
cctttaaatttaccaaaatggggtcattgttacaaacctagtcgaattta
gtgcatcaatctgcaaaataatataattttattactgaACTGTGCTGAAt
tactgtacataaaaatatttttaaatatttaaaaaattggaaaaattctg
aaagatgtCTGaagatttttccgaaaattcctgaaaaaaaaatgttaaaa
attgttaacaaaatgctccattttggctgattttagaacaaaatactaag
atttttcaaaaatttctttaagggaccaccctttttggtattttagtaca
catggtactaaaatt
Run BLAST on NCBI

transcript from alignment at scaffold_488:52383..57435-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068720 ID=TCONS_00068720|Name=TCONS_00068720|organism=Clytia hemisphaerica|type=transcript|length=5053bp|location=Sequence derived from alignment at scaffold_488:52383..57435- (Clytia hemisphaerica)
TTGTACATTAAAAAAAGCAAAGTTGTTGATTATTGGAACTGAATTGGATT
GAAGTTTGCTTGGTGAGGAATTTGCCTGATCATCACACATTTTAATCTTA
AAGTCTTAAAGGTATTTTTTGCCATAAAGCTCACAATGTAATTCAAATAT
GTCAACATCAATGATTGTAATGTAGATGCTTTTATCACCGCCACCCTGTT
CCCATGGCTCCGACTGGGGTTCTAGGTCCCCCCGCCAAATTAAGGTCCCC
CCTGAGAACAAGGTCCCCCCAGCCTGATAAAATTTTAGGTCCCAGTATAG
GGGAAAAAATTTATGGCATTCACAAAGCTCTATTTACATGTGTGTACACT
TTTAGAGAATGCAATAGAATGTCTTCATTTTTGCATTTTAACCCTTTAAG
TGCCACGGTCATTTTTTTGCTAAGCTTTTAAAAGAAAATCGCTGGTTCAA
ACTTTAAAGGCTTATATCTCCAGATCTAGAAGGAGTTAGAAGCTCGTTTA
TAGTCCGTTGGATAGCTTAAGAGTCTCCTCTTTCTTTTAGGGGACTTCGG
CGCCGCCCGATTTAGGTGCGGACCTGACTGAATGATAGAAAGGTGCCGAG
TGGTAAAACTTCAAACTAATTCGCTGGATGACAGAATCAAGTTTCTCAGG
GCCAAATTTGGCTTCGCCCTCCTACATAGCCCATGTCTGATATATACGAC
ATTGGCACTTAAAGGGTTCACACTTTGCATGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGT
GCGAGCCATGGTTCCTAATTCCGCCACCACTCTTTGTTGCATCCAGTATC
AATTATCTCTCTTTGAGAGCCAAATATAAAAATTTGAACTTTCATATTTC
CACTCTCATGTCTCAACAAATTTCTTATTATCGAAAGAAATGGTTCTTTT
TATAATAGGGGTGATGGAGTTGGGATTAGGGGGCAGTGATGGGGTGGAGC
TGGGGCATCTACCTTTTTTAACATCTGTATAGTTTACTGTATGATTTTTC
ACCATAATTGGGTGTCTATAATAGTCCTGGGGTGTCCATAATAGGTTAGG
GTTAGAGGGTATACTTTAAAGAAGGCAAAATTTTCAATTTTGATCCTTTA
TATTGTTGCTTATTCCTGTTGTATGATTGTTGAGGTTTGGAATGCTGTTA
ACCCTTACAGTGCATCTAAAAGATCTTGAAAATCCTACCCATAAGGTCGA
CAGATGCCGTAGGTCAGACCATCCCCCAGGGATTTTTTTAAATGACCAAA
ATTTTGCTCACGTTATAATTAATAAAAAAGTCCGAAATGAGTCAGAGCAA
ATTCTGTGTTAAGGTCAATACACTTCACACTTGTCAATATTATTAAAAAG
TCAATATGCAAAAATTGTTACTATAAATAGATCATAAATGTTATTGAGCT
AATATTGCTAAATATAAAGTAAAAAATTTAATTTAGATGATGTTCAAATT
TGAGAAAGTGCTCCACTCCATTGTTCGATTATTAAGCGATAGCAGATTTA
AATTGAATTTTTCAATTGAATTTTCATTCATTTTTTCTCCAAGAGAGTTA
TAAGATTTCTTCTACAAAGGCCAAGTTTTCCTATTGTTTGCAATATTACC
TATGATATTGGAGGCCCCCCAGCGGACCTTCAATTCACGCAATCACGCAA
ATTGTTTTCCCAAATTCACACATTCATGCAATGTTTTTTCGCAATTCACA
CAGTTTTTGTTCACGCAAAGCTTTAATTCACGCATTCACGCAGCTTTTCT
TTAATTTTCACGCATTCACGCAATTGAAAAAGCCCATTCACGCATTCACG
CAAACCGCTGGGGGGGGGCATATTGAGCAAGTGTAAAGGGCCCAAATTAA
AATAGATAAATATTCTATATATAACTGAATATAATTTAGATTATTGATAA
GTGTAAGGAAGTAATCAATTCTAGATTTATATCCACATAATAGTAACAGG
TTTTGAATATTGATTTGATATTGACAAGTGTATCCTTTTTTGTCTTATTT
ATTTGAAATTCAACGGTTGTAAATGTTATTTTTGTATGGGCTATTGCGAA
ACAACAATTTTTTCATAGTACAGAAGTGTTAACAAGATGGGGATGGATTA
ATATTAAAAAAGTTTATGATATTGAAATTTAGAATAGGAATCAAGTTACT
ATCTGGTACTCAAAACGCTGCAAAGTTTAAAAAAATGTTCTTTCAGTTTC
TATTTACTTATCCAATTTTTAAGAATATGAGTTGAAAAGGGAGCCTTTTT
CAATTTGATAGATATTCTACTCTATCTGCTATTTTGAAATTATTGGGGGT
TACCCCCCCCCCTTCCAAAAATTCATTTGAAATTTCAAACCCCCGTTCAA
ACAAATTGAAAATTACAACTTTATTCCATATCTGAAGGACCCCCCTCCCC
CCCACTTTAAATGGCAACCCCTTCTTAGGAAACTGAAAGCAAAAAGACCC
CTCCCCTTACGAAAATCTTTGAAATTCATGACCGCCCCTAGGATAAGAGG
GGAGTAGAAAAACTTGGCTGTCATCCGACTCTGTATATAATTGAAATTAT
TACTAATAGTGACTAATTCTGTTTTCAATATGATAAATATTTGATTTACT
ATAAGGTTTAAAAAATTTTGAACGATTATTGTCTCATGAAAAGTTTTTGA
TTATATGGAACTGTCAGGAATCATAATTATAGAATTTCTTATTTTTTAGG
ATGATTGAATGTTACAAGTTCTGCGTATACGTGCAGCTGTTGTCATTATT
CACTGATTGGTGTGATACCATTTACTGTTTTTGAACTAAAGAAGGAACAT
TCTTTGCGATAGCTCCGATAATTGGATCAAAAACGAGGAGAAATTTTGTT
TAGCCAATTATGGATAGTCTTCACGAAGTTTCATTGGAACAATGTCTTCC
TTGGTTTAGTATTTTATCTTAAGTGCAGTGGATTCTGGCTTGGAAATGAT
GTCTATTAGGTTCCCGAGAGTATTTTCTCTGAAACAGAAAGTGACTACAT
GACATTAACATGATTGCAATGAAAGATCAGCCTTTAAAGTTTGAAACAAA
CAAGAATAATTTGGCTGTAATTTGGGCACCAAAAAAAGTATTTAATTTCG
ACCTTCAGTTTTTTTTAATGTGTTATATTTTATTATTTACAACCTATTCT
ATAATATACAATGTTCTAGGGTTTTTGTTCTCTACCAGTAGATAAGCCTT
AAAAAGTACACGCTTTTCGCACTGCTTTTCTATCCTAATGGCACTTTTGC
ATGCATTGACCAAGTCTAAGAAAATTCAGACTTGTTATATTTCTATCAGC
TAAAGGTGATAATGTTTTTTTTTTTCATACTAGGCCTTACCTAAAATTGA
ATTTTTATGTTAGAAAAAGTCTAAATTTCAAAGCTAAAATTACATGGAGG
CCAGATGTTTAATCTTTATTTAAATGTATTGGTTGCGATCTTAATCTTAG
ATGTCAGGATTCTAGAGGACAAAACGCTCAATTTTAACAGCCTTTAAATG
TAGTAATTTCGGAAATAACTGTCATTTATAGTGATATAAATTATTAAAAG
TTTTTGTATTTTCCTAATCAATAGTCTCCACTATGGAGATTTCCCGTGGA
TCACAGAGCGCCTAAATATACCATTGTACTTTTTAAGGCTTGTGTTTTTT
AAGGCTTGTTAACTGGATTATGCAGTTTTTTTTATCTATTTTGTTTTTAC
AATACAGATTGAATTTTGGGGTCTAAAGCAAAGGCCTATTGTTAAGAACA
ATGACGAAATAAGAGTATACTGACCCTCAGCGAAAAAAGACTATTCCTTT
AATAAAAAAACATGTACCAGGGGGGGGGGTCAGTACTAAAATGTAAGACA
TACATGAGTACTAAAAGGATTTTCACTAATTTTTGACATACCCCCACCTA
TTTATCGAAAATGTTATTTTAGTACATATGTACTAAAATTATTTTGAGCA
ATTTAACATAGATACCACCCATTTTTTGCCCTTTTACGCCTTTAAATTTA
CCAAAATGGGGTCATTGTTACAAACCTAGTCGAATTTAGTGCATCAATCT
GCAAAATAATATAATTTTATTACTGAACTGTGCTGAATTACTGTACATAA
AAATATTTTTAAATATTTAAAAAATTGGAAAAATTCTGAAAGATGTCTGA
AGATTTTTCCGAAAATTCCTGAAAAAAAAATGTTAAAAATTGTTAACAAA
ATGCTCCATTTTGGCTGATTTTAGAACAAAATACTAAGATTTTTCAAAAA
TTTCTTTAAGGGACCACCCTTTTTGGTATTTTAGTACACATGGTACTAAA
ATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042867XLOC_042867Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068720-exon-scaffold_488-1575043694:57325..57435TCONS_00068720-exon-scaffold_488-1575043694:57325..57435Clytia hemisphaericaexon
TCONS_00068720-exon-scaffold_488-1575043694:52383..53986TCONS_00068720-exon-scaffold_488-1575043694:52383..53986Clytia hemisphaericaexon
TCONS_00068720-exon-scaffold_488-1510915933:57325..57435TCONS_00068720-exon-scaffold_488-1510915933:57325..57435Clytia hemisphaericaexon
TCONS_00068720-exon-scaffold_488-1510915933:52383..53986TCONS_00068720-exon-scaffold_488-1510915933:52383..53986Clytia hemisphaericaexon
TCONS_00068720-exon-scaffold_488-1491911889:57325..57435TCONS_00068720-exon-scaffold_488-1491911889:57325..57435Clytia hemisphaericaexon
TCONS_00068720-exon-scaffold_488-1491911889:52383..53986TCONS_00068720-exon-scaffold_488-1491911889:52383..53986Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_488supercontigscaffold_488:52383..57435 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.19963	1.23863	1.94242	3.16311	2.45915	0	0.0035626	0.0019496	0.837052	0.840676	0	0.140349	0	0.399597	0.333041	0	0.822431	0.441993	0.956934	0	0.940175	1.81072	0.00855315	0	0	0.107233	0	0.00993814	0.605364	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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