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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068677 ID=TCONS_00068677|Name=TCONS_00068677|organism=Clytia hemisphaerica|type=transcript|length=2672bpRun BLAST on NCBI protein sequence of TCONS_00068677-protein >TCONS_00068677-protein ID=TCONS_00068677-protein|Name=TCONS_00068677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp MPPPSKPGERQKLFKNQDKDTESLRQRRNEVSVVLRKAKREEALQKRRLVRun BLAST on NCBI transcript from alignment at scaffold_487:8519..20556+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068677 ID=TCONS_00068677|Name=TCONS_00068677|organism=Clytia hemisphaerica|type=transcript|length=12038bp|location=Sequence derived from alignment at scaffold_487:8519..20556+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_487:8519..20556+ >TCONS_00068677 ID=TCONS_00068677|Name=TCONS_00068677|organism=Clytia hemisphaerica|type=CDS|length=24768bp|location=Sequence derived from alignment at scaffold_487:8519..20556+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068677 vs. Swiss-Prot (Human)
Match: IMA4 (Importin subunit alpha-4 OS=Homo sapiens GN=KPNA3 PE=1 SV=2) HSP 1 Score: 661.759 bits (1706), Expect = 0.000e+0 Identity = 338/517 (65.38%), Postives = 409/517 (79.11%), Query Frame = 1
Query: 100 PSKPGERQKLFKNQDKDTESLRQRRNEVSVVLRKAKREEALQKRRLVPN--TPEDDEKYNKF--MDASLQMIVENAAHGDPATRLSAVQAARKLLSKDRHPPIDELIKSGILPILVECLQFDDNASLQFEAAWALTNIASGSSAQTQAVVHAGAVAHFMRLLESKHQNVCEQAVWALGNIIGDGPVLRDFVIRHGVVAPLLTFIDPNVPLTFLRNVTWVIVNLCRNKEPPPPMETIQQLLPALGVLIHHNDLDILVDSVWALSYLTDCGNDHIQAVLQVGVVPKLVSFLTHTEIRLQTAALRAVGNIVTGTDEQTQSVLNNGALGQFPSLLSHQKEKIRKEAVWFLSNITAGTEEQVQQVIDAGLIPFVIKALTEGEFQTQKEAAWAISNLTVSGVPGQVAYAVQEGCIPPFCNLLSVQDPQIIHIVLDGLTNIMKMAGDDVEKXXXXXXXXXXLDRIEVLQNHENPDIYKLAYQIIEKYFSNDVENEDETVVPEQNPQGQYQFNAKAS-ETSKFSL 1635
PS R K FKN+ +D E++R+ RNEV+V LRK KR+E L K+R VP + ED + F + +L+ I++NA +P +LSAVQAARKLLS DR+PPID+LIKSGILPILV+CL+ DDN SLQFEAAWALTNIASG+SAQTQAVV + AV F+RLL S HQNVCEQAVWALGNIIGDGP RD+VI GVV PLL+FI P++P+TFLRNVTWVIVNLCRNK+PPPPMET+Q++LPAL VLI+H D++ILVD+VWALSYLTD GN+ IQ V+ GVVP LV L+H E+++QTAALRAVGNIVTGTDEQTQ VLN L FP+LLSH KEKI KEAVWFLSNITAG ++QVQ VIDAGLIP +I L +G+F TQKEAAWAISNLT+SG QV Y VQ+ IPPFCNLLSV+D Q++ +VLDGL NI+ MAGD+ I IIEECGGL++IEVLQ HEN DIYKLA++II++YFS D +ED ++PE G Y F+ A+ +T +F+
Sbjct: 5 PSLENHRIKSFKNKGRDVETMRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEAILQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTVWALSYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPKEKINKEAVWFLSNITAGNQQQVQAVIDAGLIPMIIHQLAKGDFGTQKEAAWAISNLTISGRKDQVEYLVQQNVIPPFCNLLSVKDSQVVQVVLDGLKNILIMAGDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPCLIPEATQGGTYNFDPTANLQTKEFNF 521 The following BLAST results are available for this feature:
BLAST of TCONS_00068677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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