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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068675 ID=TCONS_00068675|Name=TCONS_00068675|organism=Clytia hemisphaerica|type=transcript|length=1971bp AGGGAAGCAGCGGAGCTTCGTTCAGCGCTAAAGGAAAAAGATCGTTCAAC TTTGCTAAGCTCCGACCATTCAAAGGACAACAGAATAACAAAGGAGAGGG TGAAGGGGACCCATCGGCCAGCGACGGGGACCAACTACAAAAGACGGAAG ATATGATTCTGTCATACGAATCAGTTTGCCAAGAAGAGTTGAAATACACA CGACCTGTCATTATTTTGGGACCACTCAAAGACAGACTGAATGATGATCT AATTCAAGAATTCCCTAATGAGTTTGGCAGTTGTGTTCCCCACACGACAC GTGAACCACGTGAACACGAAGTTTCAGGACGTGATTATCATTTCGTTGAT TCGCGTGAGAAAATGGAACAAGACATTGCTAACCACTTGTTCATCGAAGC CGGTCAATACAACGAGAACCTGTATGGTACAAGCGTTAGCTCCGTACGAG AAGTCTCTGAGAAAGGCAAACACTGTATATTGGATGTTAGTGGGTACGCC ATCAAGCGTCTACAAGTGGCACAATTATATCCTATCGCTGTTTTCATCAA ACCAATCTCCGTCGAATGGATGCAAGAGATGAACAAACGTCTTTTACTTG AACCCGCTCAAAAGAATTTCGAACGCGCACAAAAATTAGAACAAGAATTT ATCGAATACTTCACTGGTGTTATTACTGGCGAGTCTTATGAAGAAATCTA TTCTCACGTCAAAGAATTGATCGCACAACAAAGCAAACCCGTCGTTTGGA TACCAAGCAAAGAGAAATTATAAACCAATGTGAGACACATGGTGGATGGG TACTGGTCTTGATGTTCTTATTACGAACGTTTCAACAAGAGTAACGCCAC TGAGAAGGAGGCCTTTTCGCCTTATTCGGAGTGTCGTATCTGGTTTAATG AGCACTCCCCTGAGGAAGTGTTTCTGTTACAAAAGCGTCTGTTACGACAC TTGTTACATACTGACGCTTACTCCCGACGAATACGAAAAACAAAATTGGC TGCGTTGATGTTCATAATAAAATGAAACGTAAAAAGGACACTAAGGTTGT ACTGAAACACAAGAACTACTGCAGTCCTTATTTCGCATCAAACCAAACAA TTTTTTTTTTCGTTTTCGTTGGAAGTGAAATTCAAGTAGCTGAAAGGTGA AACATGATGGAAAATTCATTAAAAAATACGTTGTTTTATCCGTCATCGAA TACCGATATTTAATTTGTCCATAAATTGTATACTAGAAGTGCTTTTACTT AATTAAATAATTCCCCATTGTTTTTTATACTTGCTTTTAATAAATTTAGT AATTATATTATTATTATTGTCTTGTTAGATTTATTTTCCCAAATTATTTT GCCTCATTTATTTCTTTCAATCCAGCTTGTACTCAGTTTGATTATATTGT AATAGTGGTTTAATGCACTAAAATGGCTATCTTGATACAAACAAAGTTAT AACATTAGTCCCTCTGACAGTGGATTTTTTTTTTCTCTATGTAATTCGTA CAAATTAGATTTTCAAGTAGAGATCTCCAAGTGTACTCGAAGTAATTTCT CTGCACCGATTTATATTTTAGGCAATTTTAAATTCTAGGAATTTATCTTA TTGATGTCTTTCTATCTAGAAGTATacagtttttaaaaaagttttaactt gtttttagaattttcttttcttttgaccatAATTATGATTATGAAAATTT AGTCTTTGTAACGGTGTTGTTTTCTTGGCAAATTTCTCCCAATATTCTAT CTTTATGCGCTTGTAAAGCGACATTTaagttggaaagatatttcaaagTG ATCTTTTCGTAGCTCATCATGCGACAAATGAATATGAATAATATGTATTT TGTGTAGAATTTATATAAactattctttcttttttttcattttttgtttg tcaTCATGTACATATATATTCTAAAGCAAGTTAATGTCAGCGGGCaagaa acattttattttgtgtaaaat Run BLAST on NCBI protein sequence of TCONS_00068675-protein >TCONS_00068675-protein ID=TCONS_00068675-protein|Name=TCONS_00068675-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
GSSGASFSAKGKRSFNFAKLRPFKGQQNNKGEGEGDPSASDGDQLQKTED MILSYESVCQEELKYTRPVIILGPLKDRLNDDLIQEFPNEFGSCVPHTTR EPREHEVSGRDYHFVDSREKMEQDIANHLFIEAGQYNENLYGTSVSSVRE VSEKGKHCILDVSGYAIKRLQVAQLYPIAVFIKPISVEWMQEMNKRLLLE PAQKNFERAQKLEQEFIEYFTGVITGESYEEIYSHVKELIAQQSKPVVWI PSKEKL Run BLAST on NCBI transcript from alignment at scaffold_487:286..3691+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068675 ID=TCONS_00068675|Name=TCONS_00068675|organism=Clytia hemisphaerica|type=transcript|length=3406bp|location=Sequence derived from alignment at scaffold_487:286..3691+ (Clytia hemisphaerica) AGGGAAGCAGCGGAGCTTCGTTCAGCGCTAAAGGAAAAAGATCGTTCAAC
TTTGCTAAGCTCCGACCATTCAAAGGACAACAGAATAACAAAGGAGAGGG
TGAAGGGGACCCATCGGCCAGCGACGGGGACCAACTACAAAAGACGGAAG
ATATGATTCTGTCATACGAATCAGTTTGCCAAGAAGAGTTGAAATACACA
CGACCTGTCATTATTTTGGGACCACTCAAAGACAGACTGAATGATGATCT
AATTCAAGAATTCCCTAATGAGTTTGGCAGTTGTGTTCCCCGTAAGTCAT
TCATTTTATGTCAAGATAGTGCTGACGTAAACTTCATTCCCGGTTTTAAA
GACTAtattttacataagtgttcccgtttcatatcaaacacatatttcat
atcagggcagtgtctgcctattgttatattatgcttatataagcaaaaaa
atgtttttctttccctctttctgaccaatcttgctccgcattcgtgtcaa
ttcaatgtgaaaaagcttgtgaattaaaattaatgagtaagcaaacgatt
aTTACATAACAGCTTTTTTTATATTATCTGTAAAAGATCTCCTCCTAAAA
TGCACATGGTCTTCGTGATGAATCATGAAGTCTCAGGGTTAGTTATATAT
AAATTCGTGTTagttaaatgaaaaaaacaaacttttaagaTTGTTGGGAC
CAGCTGCATACCTTACTTGCAATAGTTCTGATTAAAAAGAATCGTTTCGT
CTGTAAAATAGCTTtcttttttgtaagcaaaacTTCTTTCTAACTGTTTA
CCTTATCTTTTTGACAGACACGACACGTGAACCACGTGAACACGAAGTTT
CAGGACGTGATTATCATTTCGTTGATTCGCGTGAGAAAATGGAACAAGAC
ATTGCTAACCACTTGTTCATCGAAGCCGGTCAATACAACGAGAACCTGTA
TGGTACAAGCGTTAGCTCCGTACGAGAAGTCTCTGAGAAAGTAAGTAGTA
ACAAGCTTTTGTCCTTCTCAAAGTTTTGTGTCgtcatattcatgatatgc
accattgtaatgtcttccacggacccaacagctgattggttgaaagtgac
gtAAAATCATTCAATACGTCACTTTCAACCAATCAGCTGTTGGGTCCGTG
GAAGACATTGCAATGGTGCACATCATGAATATAAAGTTGTGAGAGGTTAT
CTCCCACGCAGATCTAGATGCCCAAGCTTCATCATAATTTCTATGCTAGA
AAGTGTCTGAAGAAGCTTATAATTGTTTTGTTCGCCACTAAACTAACTCA
TTGAAAAATCTAATGGTCCGCAAGATTATGAGCTTCATTTTCTATTTTCT
GTATCAATAAAGACATACACAACTCTTTCAGGGCAAACACTGTATATTGG
ATGTTAGTGGGTACGCCATCAAGCGTCTACAAGTGGCACAATTATATCCT
ATCGCTGTTTTCATCAAACCAATCTCCGTCGAATGGATGCAAGAGATGAA
CAAACGTCTTTTACTTGAACCCGCTCAAAAGAATTTCGAACGCGCACAAA
AATTAGAACAAGAATTTATCGAATACTTCACTGGTACGAACTTCATTTTT
AGCTACAATATTTTCTCGTCTCTGTTGAGAGTAGTATAAGGGGTGTTACT
CATTAAACAGGGGTTCGTTACCGTTTCTTATTCAAGTTCCTTTAACAGGC
TCATTGATTGCTTACTCGTTTGACCGTTTTGAAAAGTTGATATTCCTGAA
AGAAATTACTATTACTATACATTTTCAAAGTTCCTCGGTATTCTCCTCTC
CTCGAAATACGAAAAGAGGATTTTCCCGTAAACTTAGATCTGACGGCAGA
GAGATGATGATGGTAATTTTCTTTTAATTAACAGGTGTTATTACTGGCGA
GTCTTATGAAGAAATCTATTCTCACGTCAAAGAATTGATCGCACAACAAA
GCAAACCCGTCGTTTGGATACCAAGCAAAGAGAAATTATAAACCAATGTG
AGACACATGGTAAGAAAACATATCCCGTATAGTAGTGTGGAGTATTGGAC
GAACATACTGGAATAAATGGACGTGGACGTCGGTAGCATAGCTTGAGATA
CGCTAGCTTCTTTTTTTATCATGGCGACGGTGGTTTGGAAGCTACAGTGA
AGTTCACATATAAGGGCTGCCGACAAATTATAAATGGAATAGAAGGAAAA
TGGATGTTGCTATTTGTTGGTTTTAGGTGGATGGGTACTGGTCTTGATGT
TCTTATTACGAACGTTTCAACAAGAGTAACGCCACTGAGAAGGAGGCCTT
TTCGCCTTATTCGGAGTGTCGTATCTGGTTTAATGAGCACTCCCCTGAGG
AAGTGTTTCTGTTACAAAAGCGTCTGTTACGACACTTGTTACATACTGAC
GCTTACTCCCGACGAATACGAAAAACAAAATTGGCTGCGTTGATGTTCAT
AATAAAATGAAACGTAAAAAGGACACTAAGGTTGTACTGAAACACAAGAA
CTACTGCAGTCCTTATTTCGCATCAAACCAAACAATTTTTTTTTTCGTTT
TCGTTGGAAGTGAAATTCAAGTAGCTGAAAGGTGAAACATGATGGAAAAT
TCATTAAAAAATACGTTGTTTTATCCGTCATCGAATACCGATATTTAATT
TGTCCATAAATTGTATACTAGAAGTGCTTTTACTTAATTAAATAATTCCC
CATTGTTTTTTATACTTGCTTTTAATAAATTTAGTAATTATATTATTATT
ATTGTCTTGTTAGATTTATTTTCCCAAATTATTTTGCCTCATTTATTTCT
TTCAATCCAGCTTGTACTCAGTTTGATTATATTGTAATAGTGGTTTAATG
CACTAAAATGGCTATCTTGATACAAACAAAGTTATAACATTAGTCCCTCT
GACAGTGGATTTTTTTTTTCTCTATGTAATTCGTACAAATTAGATTTTCA
AGTAGAGATCTCCAAGTGTACTCGAAGTAATTTCTCTGCACCGATTTATA
TTTTAGGCAATTTTAAATTCTAGGAATTTATCTTATTGATGTCTTTCTAT
CTAGAAGTATacagtttttaaaaaagttttaacttgtttttagaattttc
ttttcttttgaccatAATTATGATTATGAAAATTTAGTCTTTGTAACGGT
GTTGTTTTCTTGGCAAATTTCTCCCAATATTCTATCTTTATGCGCTTGTA
AAGCGACATTTaagttggaaagatatttcaaagTGATCTTTTCGTAGCTC
ATCATGCGACAAATGAATATGAATAATATGTATTTTGTGTAGAATTTATA
TAAactattctttcttttttttcattttttgtttgtcaTCATGTACATAT
ATATTCTAAAGCAAGTTAATGTCAGCGGGCaagaaacattttattttgtg
taaaat Coding sequence (CDS) from alignment at scaffold_487:286..3691+ >TCONS_00068675 ID=TCONS_00068675|Name=TCONS_00068675|organism=Clytia hemisphaerica|type=CDS|length=3084bp|location=Sequence derived from alignment at scaffold_487:286..3691+ (Clytia hemisphaerica) GGAAGCAGCGGAGCTTCGTTCAGCGCTAAAGGAAAAAGATCGTTCAACTT TGCTAAGCTCCGACCATTCAAAGGACAACAGAATAACAAAGGAGAGGGTG AAGGGGACCCATCGGCCAGCGACGGGGACCAACTACAAAAGACGGAAGAT ATGATTCTGTCATACGAATCAGTTTGCCAAGAAGAGTTGAAATACACACG ACCTGTCATTATTTTGGGACCACTCAAAGACAGACTGAATGATGATCTAA TTCAAGAATTCCCTAATGAGTTTGGCAGTTGTGTTCCCCACACGACACGT GAACCACGTGAACACGAAGTTTCAGGACGTGATTATCATTTCGTTGATTC GCGTGAGAAAATGGAACAAGACATTGCTAACCACTTGTTCATCGAAGCCG GTCAATACAACGAGAACCTGTATGGTACAAGCGTTAGCTCCGTACGAGAA GTCTCTGAGAAAGGCAAACACTGTATATTGGATGTTAGTGGGTACGCCAT CAAGCGTCTACAAGTGGCACAATTATATCCTATCGCTGTTTTCATCAAAC CAATCTCCGTCGAATGGATGCAAGAGATGAACAAACGTCTTTTACTTGAA CCCGCTCAAAAGAATTTCGAACGCGCACAAAAATTAGAACAAGAATTTAT CGAATACTTCACTGGTGTTATTACTGGCGAGTCTTATGAAGAAATCTATT CTCACGTCAAAGAATTGATCGCACAACAAAGCAAACCCGTCGTTTGGATA CCAAGCAAAGAGAAATTATAAGGAAGCAGCGGAGCTTCGTTCAGCGCTAA AGGAAAAAGATCGTTCAACTTTGCTAAGCTCCGACCATTCAAAGGACAAC AGAATAACAAAGGAGAGGGTGAAGGGGACCCATCGGCCAGCGACGGGGAC CAACTACAAAAGACGGAAGATATGATTCTGTCATACGAATCAGTTTGCCA AGAAGAGTTGAAATACACACGACCTGTCATTATTTTGGGACCACTCAAAG ACAGACTGAATGATGATCTAATTCAAGAATTCCCTAATGAGTTTGGCAGT TGTGTTCCCCACACGACACGTGAACCACGTGAACACGAAGTTTCAGGACG TGATTATCATTTCGTTGATTCGCGTGAGAAAATGGAACAAGACATTGCTA ACCACTTGTTCATCGAAGCCGGTCAATACAACGAGAACCTGTATGGTACA AGCGTTAGCTCCGTACGAGAAGTCTCTGAGAAAGGCAAACACTGTATATT GGATGTTAGTGGGTACGCCATCAAGCGTCTACAAGTGGCACAATTATATC CTATCGCTGTTTTCATCAAACCAATCTCCGTCGAATGGATGCAAGAGATG AACAAACGTCTTTTACTTGAACCCGCTCAAAAGAATTTCGAACGCGCACA AAAATTAGAACAAGAATTTATCGAATACTTCACTGGTGTTATTACTGGCG AGTCTTATGAAGAAATCTATTCTCACGTCAAAGAATTGATCGCACAACAA AGCAAACCCGTCGTTTGGATACCAAGCAAAGAGAAATTATAAGGAAGCAG CGGAGCTTCGTTCAGCGCTAAAGGAAAAAGATCGTTCAACTTTGCTAAGC TCCGACCATTCAAAGGACAACAGAATAACAAAGGAGAGGGTGAAGGGGAC CCATCGGCCAGCGACGGGGACCAACTACAAAAGACGGAAGATATGATTCT GTCATACGAATCAGTTTGCCAAGAAGAGTTGAAATACACACGACCTGTCA TTATTTTGGGACCACTCAAAGACAGACTGAATGATGATCTAATTCAAGAA TTCCCTAATGAGTTTGGCAGTTGTGTTCCCCACACGACACGTGAACCACG TGAACACGAAGTTTCAGGACGTGATTATCATTTCGTTGATTCGCGTGAGA AAATGGAACAAGACATTGCTAACCACTTGTTCATCGAAGCCGGTCAATAC AACGAGAACCTGTATGGTACAAGCGTTAGCTCCGTACGAGAAGTCTCTGA GAAAGGCAAACACTGTATATTGGATGTTAGTGGGTACGCCATCAAGCGTC TACAAGTGGCACAATTATATCCTATCGCTGTTTTCATCAAACCAATCTCC GTCGAATGGATGCAAGAGATGAACAAACGTCTTTTACTTGAACCCGCTCA AAAGAATTTCGAACGCGCACAAAAATTAGAACAAGAATTTATCGAATACT TCACTGGTGTTATTACTGGCGAGTCTTATGAAGAAATCTATTCTCACGTC AAAGAATTGATCGCACAACAAAGCAAACCCGTCGTTTGGATACCAAGCAA AGAGAAATTATAAGGAAGCAGCGGAGCTTCGTTCAGCGCTAAAGGAAAAA GATCGTTCAACTTTGCTAAGCTCCGACCATTCAAAGGACAACAGAATAAC AAAGGAGAGGGTGAAGGGGACCCATCGGCCAGCGACGGGGACCAACTACA AAAGACGGAAGATATGATTCTGTCATACGAATCAGTTTGCCAAGAAGAGT TGAAATACACACGACCTGTCATTATTTTGGGACCACTCAAAGACAGACTG AATGATGATCTAATTCAAGAATTCCCTAATGAGTTTGGCAGTTGTGTTCC CCACACGACACGTGAACCACGTGAACACGAAGTTTCAGGACGTGATTATC ATTTCGTTGATTCGCGTGAGAAAATGGAACAAGACATTGCTAACCACTTG TTCATCGAAGCCGGTCAATACAACGAGAACCTGTATGGTACAAGCGTTAG CTCCGTACGAGAAGTCTCTGAGAAAGGCAAACACTGTATATTGGATGTTA GTGGGTACGCCATCAAGCGTCTACAAGTGGCACAATTATATCCTATCGCT GTTTTCATCAAACCAATCTCCGTCGAATGGATGCAAGAGATGAACAAACG TCTTTTACTTGAACCCGCTCAAAAGAATTTCGAACGCGCACAAAAATTAG AACAAGAATTTATCGAATACTTCACTGGTGTTATTACTGGCGAGTCTTAT GAAGAAATCTATTCTCACGTCAAAGAATTGATCGCACAACAAAGCAAACC CGTCGTTTGGATACCAAGCAAAGAGAAATTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00068675-exon-scaffold_487-1491911889:286..576 | TCONS_00068675-exon-scaffold_487-1491911889:286..576 | Clytia hemisphaerica | exon |
TCONS_00068675-exon-scaffold_487-1510915933:286..576 | TCONS_00068675-exon-scaffold_487-1510915933:286..576 | Clytia hemisphaerica | exon |
TCONS_00068675-exon-scaffold_487-1575043694:286..576 | TCONS_00068675-exon-scaffold_487-1575043694:286..576 | Clytia hemisphaerica | exon |
TCONS_00068675-exon-scaffold_487-1491911889:1103..1275 | TCONS_00068675-exon-scaffold_487-1491911889:1103..1275 | Clytia hemisphaerica | exon |
TCONS_00068675-exon-scaffold_487-1510915933:1103..1275 | TCONS_00068675-exon-scaffold_487-1510915933:1103..1275 | Clytia hemisphaerica | exon |
TCONS_00068675-exon-scaffold_487-1575043694:1103..1275 | TCONS_00068675-exon-scaffold_487-1575043694:1103..1275 | Clytia hemisphaerica | exon |
TCONS_00068675-exon-scaffold_487-1491911889:1667..1868 | TCONS_00068675-exon-scaffold_487-1491911889:1667..1868 | Clytia hemisphaerica | exon |
TCONS_00068675-exon-scaffold_487-1510915933:1667..1868 | TCONS_00068675-exon-scaffold_487-1510915933:1667..1868 | Clytia hemisphaerica | exon |
TCONS_00068675-exon-scaffold_487-1575043694:1667..1868 | TCONS_00068675-exon-scaffold_487-1575043694:1667..1868 | Clytia hemisphaerica | exon |
TCONS_00068675-exon-scaffold_487-1491911889:2170..2294 | TCONS_00068675-exon-scaffold_487-1491911889:2170..2294 | Clytia hemisphaerica | exon |
TCONS_00068675-exon-scaffold_487-1510915933:2170..2294 | TCONS_00068675-exon-scaffold_487-1510915933:2170..2294 | Clytia hemisphaerica | exon |
TCONS_00068675-exon-scaffold_487-1575043694:2170..2294 | TCONS_00068675-exon-scaffold_487-1575043694:2170..2294 | Clytia hemisphaerica | exon |
TCONS_00068675-exon-scaffold_487-1491911889:2512..3691 | TCONS_00068675-exon-scaffold_487-1491911889:2512..3691 | Clytia hemisphaerica | exon |
TCONS_00068675-exon-scaffold_487-1510915933:2512..3691 | TCONS_00068675-exon-scaffold_487-1510915933:2512..3691 | Clytia hemisphaerica | exon |
TCONS_00068675-exon-scaffold_487-1575043694:2512..3691 | TCONS_00068675-exon-scaffold_487-1575043694:2512..3691 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_487 | supercontig | scaffold_487:286..3691 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00068675 vs. Swiss-Prot (Human)
Match: DLG2 (Disks large homolog 2 OS=Homo sapiens GN=DLG2 PE=1 SV=3) HSP 1 Score: 311.612 bits (797), Expect = 1.026e-93 Identity = 155/242 (64.05%), Postives = 190/242 (78.51%), Query Frame = 3
Query: 45 FNFAKLRPFKGQQNNKGEGEGDPSASDGDQLQKTEDMILSYESVCQEELKYTRPVIILGPLKDRLNDDLIQEFPNEFGSCVPHTTREPREHEVSGRDYHFVDSREKMEQDIANHLFIEAGQYNENLYGTSVSSVREVSEKGKHCILDVSGYAIKRLQVAQLYPIAVFIKPISVEWMQEMNKRLLLEPAQKNFERAQKLEQEFIEYFTGVITGESYEEIYSHVKELIAQQSKPVVWIPSKEKL 770
F F++ PF NK + E + S D + ED+ILSYE V ++E+ YTRPVIILGP+KDR+NDDLI EFP++FGSCVPHTTR R++EV GRDYHFV SRE+ME+DI H FIEAGQYN+NLYGTSV SVR V+E+GKHCILDVSG AIKRLQVAQLYPIA+FIKP S+E + EMNKRL E A+K ++RA KLEQEF EYFT ++ G++ E+IY+ K +I +QS P +WIPSKEKL
Sbjct: 636 FIFSRKFPF---YKNKEQSEQETS----DPERGQEDLILSYEPVTRQEINYTRPVIILGPMKDRINDDLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRFVAERGKHCILDVSGNAIKRLQVAQLYPIAIFIKPRSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEFGEYFTAIVQGDTLEDIYNQCKLVIEEQSGPFIWIPSKEKL 870
The following BLAST results are available for this feature:
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