TCONS_00068669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068669
Unique NameTCONS_00068669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068669 ID=TCONS_00068669|Name=TCONS_00068669|organism=Clytia hemisphaerica|type=transcript|length=393bp
GCCACTTGGCACATTTTGAAGCTGAGATATATTGCCAAATGTATATCTTA
CTTCATTAGGATTCGCATCATCAACTACAACTTTAGCTACAGCCAACCAG
CCTCCTGTGGATAAAGATTTAGTAAAGATGATTGACTGCTGTCTTGGGAA
ATAATTGGAAATAAAGTTTCACATTTTTAAAGGCTTAGAAATAGGTGAAA
TTCATTATCAAAATGTGCAATGTTGTAAGAGACTTAAGAATTAATCCTGA
CTGGACTAGTCTAACTTTTATCAAGGGGAAATGTATTTTTAAGCATcata
tgcaaaatttaaaaaaaactgctattttgaaatgaatGATACCTGGTTAT
ACCTTTATCAAACTACTAACAACGTAATGATAATTGTTCTGCG
Run BLAST on NCBI

transcript from alignment at scaffold_486:310145..310537

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068669 ID=TCONS_00068669|Name=TCONS_00068669|organism=Clytia hemisphaerica|type=transcript|length=393bp|location=Sequence derived from alignment at scaffold_486:310145..310537 (Clytia hemisphaerica)
CGCAGAACAATTATCATTACGTTGTTAGTAGTTTGATAAAGGTATAACCA
GGTATCattcatttcaaaatagcagttttttttaaattttgcatatgATG
CTTAAAAATACATTTCCCCTTGATAAAAGTTAGACTAGTCCAGTCAGGAT
TAATTCTTAAGTCTCTTACAACATTGCACATTTTGATAATGAATTTCACC
TATTTCTAAGCCTTTAAAAATGTGAAACTTTATTTCCAATTATTTCCCAA
GACAGCAGTCAATCATCTTTACTAAATCTTTATCCACAGGAGGCTGGTTG
GCTGTAGCTAAAGTTGTAGTTGATGATGCGAATCCTAATGAAGTAAGATA
TACATTTGGCAATATATCTCAGCTTCAAAATGTGCCAAGTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042841XLOC_042841Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068669-exon-scaffold_486-1491911889:310145..310537TCONS_00068669-exon-scaffold_486-1491911889:310145..310537Clytia hemisphaericaexon
TCONS_00068669-exon-scaffold_486-1510915933:310145..310537TCONS_00068669-exon-scaffold_486-1510915933:310145..310537Clytia hemisphaericaexon
TCONS_00068669-exon-scaffold_486-1575043694:310145..310537TCONS_00068669-exon-scaffold_486-1575043694:310145..310537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_486supercontigscaffold_486:310145..310537 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.192814	0.564072	0	0.213586	0.52004	0.410943	0.743678	0.928296	0	0	0	0	0.128234	0	0	0.117495	0	0	1.43476	0	0.186423	0	0.221077	0.200991	0.414031	0.184757	1.05754	0.84648	0.642025	0.436081
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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