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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068668 ID=TCONS_00068668|Name=TCONS_00068668|organism=Clytia hemisphaerica|type=transcript|length=1448bp
tttctgtttttttataatagtGATTTTTTAGGCTAAATTTGTATACATCT
GGTGGTGTCATTTAGATTAAGAAGTGTTTAGGCGTGTTTCTTAATTATTA
TGTTGTGTGAGATGTTATAAATCTTTTCAAGATCACAAATACATCATACC
AAAAATGGTGAAAGATTTTGACTTTGCTAAAACAGGAACCATTCATGATG
AGAGAAAGTATATTGTACCATTGACTGTAAATGGTGTAGAACTCGATGTC
AATGGCATGCTATCTTGGCACTTGTCTGAAACAGGAAAACTCATTGCATT
TTCCAAATCAAAAGAAACATTTTATGAATATAATTTCAGTGGTAGGGAAA
CAGAAATACaggaaaaacatttgaaaattgaattgggAAAATATAAATGT
TTTGCCCTATCCAACGATTTCAAAGTTTGTGCTTGTTTGAAGGATTTCAC
AAATATTACCTTTTTGAGTTTGTTAAAGCAAAGCCATCAAATCAAATTCA
CCATTTATGCATCATATTCTGACTCATTATTAATGAAGAATGAGTACAAG
TCATCTGAAATGTTACCAAACAATGTTAGATCTACGCTGAAAGAAATATT
TAAGTCAACATTAACTCCAAAACTGAAATTCATCATATTCTATAAAGCAC
GCAGTGATAAATGGTTCAGTGAGatcttttctttaaaagaaGGAACATTA
GCAATTGAAGAAATGCTACATCATATTGACTTGACAGATTTTTTTGTTGA
TAAGCTGCACTCTCAGGAAAACTCTATACAAATTTGTGTCAATTTTGAAG
AAACGATATGTTTATTTCATTGCACTCGAGCGTCAGTTGTATATTCTATG
ACCAGCAAATTACTGCTATCCTTGGATACAATTGAAGGAGTCTGCAATCA
TTTCCTGATCAAAGATCCCAAGCTAGGTGATGTGATTTTTCAGCACACTT
TAAATCAACTAACTCAAGAAAAGTCTATAAAATGTTACGTTGTGAAATTC
ATGAGTTTAGAAAGGAAAGCGATATGTGACCTGGAAAAAGACCTTGGTAT
TGTTTCGTACAATTCTATTATGGTGCATTCTTTCCTCCAAActgttttgt
ttgtttcaacTCAAACCACAGTGTACATCATTGACCCCTTCACAAGTGTT
ATCATGAAAAAAGTTGATCTTTTTGGTTCGTATCATTTGACAGAGTTGCA
CATCAATTGGTCTGGCGAGGAACTTTTCGTGGAATGTGACAATGGAGTAG
AAGGAAAACTGAAACATTTTCACatcaattattttgataatgACAACAGT
GGTTCAAATGTGCCTTCATTATTTGCTTTTGCTAGAAGGATGCTACTCAG
CTCTTGTTCATCTCATGAGTTGCAAAATATTGTAATGTCTTGTCGTTTAA
AAAAGTCATTGGGAATACCTGTTTATAACTGATTTTCTATGGGAAATt Run BLAST on NCBI protein sequence of TCONS_00068668-protein >TCONS_00068668-protein ID=TCONS_00068668-protein|Name=TCONS_00068668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=425bp
MVKDFDFAKTGTIHDERKYIVPLTVNGVELDVNGMLSWHLSETGKLIAFS
KSKETFYEYNFSGRETEIQEKHLKIELGKYKCFALSNDFKVCACLKDFTN
ITFLSLLKQSHQIKFTIYASYSDSLLMKNEYKSSEMLPNNVRSTLKEIFK
STLTPKLKFIIFYKARSDKWFSEIFSLKEGTLAIEEMLHHIDLTDFFVDK
LHSQENSIQICVNFEETICLFHCTRASVVYSMTSKLLLSLDTIEGVCNHF
LIKDPKLGDVIFQHTLNQLTQEKSIKCYVVKFMSLERKAICDLEKDLGIV
SYNSIMVHSFLQTVLFVSTQTTVYIIDPFTSVIMKKVDLFGSYHLTELHI
NWSGEELFVECDNGVEGKLKHFHINYFDNDNSGSNVPSLFAFARRMLLSS
CSSHELQNIVMSCRLKKSLGIPVYN Run BLAST on NCBI transcript from alignment at scaffold_486:281366..282813 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068668 ID=TCONS_00068668|Name=TCONS_00068668|organism=Clytia hemisphaerica|type=transcript|length=1448bp|location=Sequence derived from alignment at scaffold_486:281366..282813 (Clytia hemisphaerica)
aATTTCCCATAGAAAATCAGTTATAAACAGGTATTCCCAATGACTTTTTT
AAACGACAAGACATTACAATATTTTGCAACTCATGAGATGAACAAGAGCT
GAGTAGCATCCTTCTAGCAAAAGCAAATAATGAAGGCACATTTGAACCAC
TGTTGTcattatcaaaataattgatGTGAAAATGTTTCAGTTTTCCTTCT
ACTCCATTGTCACATTCCACGAAAAGTTCCTCGCCAGACCAATTGATGTG
CAACTCTGTCAAATGATACGAACCAAAAAGATCAACTTTTTTCATGATAA
CACTTGTGAAGGGGTCAATGATGTACACTGTGGTTTGAgttgaaacaaac
aaaacagTTTGGAGGAAAGAATGCACCATAATAGAATTGTACGAAACAAT
ACCAAGGTCTTTTTCCAGGTCACATATCGCTTTCCTTTCTAAACTCATGA
ATTTCACAACGTAACATTTTATAGACTTTTCTTGAGTTAGTTGATTTAAA
GTGTGCTGAAAAATCACATCACCTAGCTTGGGATCTTTGATCAGGAAATG
ATTGCAGACTCCTTCAATTGTATCCAAGGATAGCAGTAATTTGCTGGTCA
TAGAATATACAACTGACGCTCGAGTGCAATGAAATAAACATATCGTTTCT
TCAAAATTGACACAAATTTGTATAGAGTTTTCCTGAGAGTGCAGCTTATC
AACAAAAAAATCTGTCAAGTCAATATGATGTAGCATTTCTTCAATTGCTA
ATGTTCCttcttttaaagaaaagatCTCACTGAACCATTTATCACTGCGT
GCTTTATAGAATATGATGAATTTCAGTTTTGGAGTTAATGTTGACTTAAA
TATTTCTTTCAGCGTAGATCTAACATTGTTTGGTAACATTTCAGATGACT
TGTACTCATTCTTCATTAATAATGAGTCAGAATATGATGCATAAATGGTG
AATTTGATTTGATGGCTTTGCTTTAACAAACTCAAAAAGGTAATATTTGT
GAAATCCTTCAAACAAGCACAAACTTTGAAATCGTTGGATAGGGCAAAAC
ATTTATATTTTcccaattcaattttcaaatgtttttcctGTATTTCTGTT
TCCCTACCACTGAAATTATATTCATAAAATGTTTCTTTTGATTTGGAAAA
TGCAATGAGTTTTCCTGTTTCAGACAAGTGCCAAGATAGCATGCCATTGA
CATCGAGTTCTACACCATTTACAGTCAATGGTACAATATACTTTCTCTCA
TCATGAATGGTTCCTGTTTTAGCAAAGTCAAAATCTTTCACCATTTTTGG
TATGATGTATTTGTGATCTTGAAAAGATTTATAACATCTCACACAACATA
ATAATTAAGAAACACGCCTAAACACTTCTTAATCTAAATGACACCACCAG
ATGTATACAAATTTAGCCTAAAAAATCactattataaaaaaacagaaa Coding sequence (CDS) from alignment at scaffold_486:281366..282813 >TCONS_00068668 ID=TCONS_00068668|Name=TCONS_00068668|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_486:281366..282813 (Clytia hemisphaerica)
TCAGTTATAAACAGGTATTCCCAATGACTTTTTTAAACGACAAGACATTA
CAATATTTTGCAACTCATGAGATGAACAAGAGCTGAGTAGCATCCTTCTA
GCAAAAGCAAATAATGAAGGCACATTTGAACCACTGTTGTcattatcaaa
ataattgatGTGAAAATGTTTCAGTTTTCCTTCTACTCCATTGTCACATT
CCACGAAAAGTTCCTCGCCAGACCAATTGATGTGCAACTCTGTCAAATGA
TACGAACCAAAAAGATCAACTTTTTTCATGATAACACTTGTGAAGGGGTC
AATGATGTACACTGTGGTTTGAgttgaaacaaacaaaacagTTTGGAGGA
AAGAATGCACCATAATAGAATTGTACGAAACAATACCAAGGTCTTTTTCC
AGGTCACATATCGCTTTCCTTTCTAAACTCATGAATTTCACAACGTAACA
TTTTATAGACTTTTCTTGAGTTAGTTGATTTAAAGTGTGCTGAAAAATCA
CATCACCTAGCTTGGGATCTTTGATCAGGAAATGATTGCAGACTCCTTCA
ATTGTATCCAAGGATAGCAGTAATTTGCTGGTCATAGAATATACAACTGA
CGCTCGAGTGCAATGAAATAAACATATCGTTTCTTCAAAATTGACACAAA
TTTGTATAGAGTTTTCCTGAGAGTGCAGCTTATCAACAAAAAAATCTGTC
AAGTCAATATGATGTAGCATTTCTTCAATTGCTAATGTTCCttcttttaa
agaaaagatCTCACTGAACCATTTATCACTGCGTGCTTTATAGAATATGA
TGAATTTCAGTTTTGGAGTTAATGTTGACTTAAATATTTCTTTCAGCGTA
GATCTAACATTGTTTGGTAACATTTCAGATGACTTGTACTCATTCTTCAT
TAATAATGAGTCAGAATATGATGCATAAATGGTGAATTTGATTTGATGGC
TTTGCTTTAACAAACTCAAAAAGGTAATATTTGTGAAATCCTTCAAACAA
GCACAAACTTTGAAATCGTTGGATAGGGCAAAACATTTATATTTTcccaa
ttcaattttcaaatgtttttcctGTATTTCTGTTTCCCTACCACTGAAAT
TATATTCATAAAATGTTTCTTTTGATTTGGAAAATGCAATGAGTTTTCCT
GTTTCAGACAAGTGCCAAGATAGCATGCCATTGACATCGAGTTCTACACC
ATTTACAGTCAATGGTACAATATACTTTCTCTCATCATGAATGGTTCCTG
TTTTAGCAAAGTCAAAATCTTTCACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068668-exon-scaffold_486-1491911889:281366..282813 | TCONS_00068668-exon-scaffold_486-1491911889:281366..282813 | Clytia hemisphaerica | exon |
| TCONS_00068668-exon-scaffold_486-1510915933:281366..282813 | TCONS_00068668-exon-scaffold_486-1510915933:281366..282813 | Clytia hemisphaerica | exon |
| TCONS_00068668-exon-scaffold_486-1575043694:281366..282813 | TCONS_00068668-exon-scaffold_486-1575043694:281366..282813 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_486 | supercontig | scaffold_486:281366..282813 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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