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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068659 ID=TCONS_00068659|Name=TCONS_00068659|organism=Clytia hemisphaerica|type=transcript|length=1286bp
NNGGAGGATATTGAGGTGTATGATGAGAGGTCAGTAATACTTTTGGTAGG
TGAAGATACAGGTGTATGTTGTGGGGAGTTTGCGACAAATGTGGTGTTGG
TAGTTTTGACTGTTTGTGTAGGTGTTTGGATAGAGTTGATGTTGACATGA
TTCACACTGGAATTGGCAGTGTTGGTTAAACTTGTTTAATTTATTGTATT
TTCCTGACAATGTTGACAAAGGTAAAACATACCAGGTATTTGGTAGATTA
AGTCTCTCAATTCCTCGTCTTGGTCAATCAAATTAATGTTCTTTAGCAGT
TTTAGGAAGCATGGTCGATGGACTTCTTGTCCACAGGAGCCGCATTTTAA
GAGTGAATCGTCATGCATTTTTACTCTATATGACTGGTTGCATATTTGAC
ATATGTCTGGAAAATAGCTCTGTATGACCACACACAAATTTTCAATTGCT
TCGTCTTTGTTCATTATGTTGGTTGTTTTTGACAGGAAATTCAATGTTTC
CATGATGGGATCCTTTCGGCATGATTTTAGGGTTTTTATGTTATCTTTAG
TTGGCTGAATTGAAGAGTCTGAGGCAGTTTCTAATTGTTTCATTGCTGGC
CTCTTCTGCTAGTTCAGCAAGTACTTGCTTCCAATTGTTGATGAGATCGA
CTGGTACAGCATTTTTTGTGGTATTTTGAGAGTTTTGCTGAGTCGGCATG
GCTGCAAACAAACAACACCAAACCAGACTGGGCAGGTACTTAGCTTAGTG
GTTTAGTAGAGTTTCGTAGCCAACAGGATAGTTGAAAAGAATTAGTTGGA
AGACAAATACAGATAACAGATAATTCAGGATACAGATACCTGATCAGCTG
CACATGGGAAACCATTCACTGTCATGTGCAGCTGCTCCTAAGGATTTGGC
AAAATGCCTGTGTGACCAGCCACAGGACCCTTGTCTTGAGATGTGATATT
GAAAAGTTGGATGTTGGACGgaagaaggtaaaaaataaagtaatacCTCA
GTAGTCCAGGGCTAACCTGGTGTGTTAAAGCTATGTGGTCTTTGGTCTTT
ATCCAGGTTGATTTTTGATAGCCAGCAAGCCAAAGAAGTTCCGCTTGATC
GGCCACTTCTGAGTATAAAACAACTCAGGTGGGTTGATTTCTTTAAATTT
CACACCTTTCAAATTACAGACCAAATAGGTGTGGTCGTATTTACTTACGT
ATTTATAGACCATAGAGTTCCCTGACCAGTGCAAActttcaaatatctaa
atcattctctttaaagaaaaaaattgacaatgtttt Run BLAST on NCBI protein sequence of TCONS_00068659-protein >TCONS_00068659-protein ID=TCONS_00068659-protein|Name=TCONS_00068659-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MKQLETASDSSIQPTKDNIKTLKSCRKDPIMETLNFLSKTTNIMNKDEAI
ENLCVVIQSYFPDICQICNQSYRVKMHDDSLLKCGSCGQEVHRPCFLKLL
KNINLIDQDEELRDLIYQIPGMFYLCQHCQENTIN Run BLAST on NCBI transcript from alignment at scaffold_486:175110..176395 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068659 ID=TCONS_00068659|Name=TCONS_00068659|organism=Clytia hemisphaerica|type=transcript|length=1286bp|location=Sequence derived from alignment at scaffold_486:175110..176395 (Clytia hemisphaerica)
aaaacattgtcaatttttttctttaaagagaatgatttagatatttgaaa
gTTTGCACTGGTCAGGGAACTCTATGGTCTATAAATACGTAAGTAAATAC
GACCACACCTATTTGGTCTGTAATTTGAAAGGTGTGAAATTTAAAGAAAT
CAACCCACCTGAGTTGTTTTATACTCAGAAGTGGCCGATCAAGCGGAACT
TCTTTGGCTTGCTGGCTATCAAAAATCAACCTGGATAAAGACCAAAGACC
ACATAGCTTTAACACACCAGGTTAGCCCTGGACTACTGAGgtattacttt
attttttaccttcttcCGTCCAACATCCAACTTTTCAATATCACATCTCA
AGACAAGGGTCCTGTGGCTGGTCACACAGGCATTTTGCCAAATCCTTAGG
AGCAGCTGCACATGACAGTGAATGGTTTCCCATGTGCAGCTGATCAGGTA
TCTGTATCCTGAATTATCTGTTATCTGTATTTGTCTTCCAACTAATTCTT
TTCAACTATCCTGTTGGCTACGAAACTCTACTAAACCACTAAGCTAAGTA
CCTGCCCAGTCTGGTTTGGTGTTGTTTGTTTGCAGCCATGCCGACTCAGC
AAAACTCTCAAAATACCACAAAAAATGCTGTACCAGTCGATCTCATCAAC
AATTGGAAGCAAGTACTTGCTGAACTAGCAGAAGAGGCCAGCAATGAAAC
AATTAGAAACTGCCTCAGACTCTTCAATTCAGCCAACTAAAGATAACATA
AAAACCCTAAAATCATGCCGAAAGGATCCCATCATGGAAACATTGAATTT
CCTGTCAAAAACAACCAACATAATGAACAAAGACGAAGCAATTGAAAATT
TGTGTGTGGTCATACAGAGCTATTTTCCAGACATATGTCAAATATGCAAC
CAGTCATATAGAGTAAAAATGCATGACGATTCACTCTTAAAATGCGGCTC
CTGTGGACAAGAAGTCCATCGACCATGCTTCCTAAAACTGCTAAAGAACA
TTAATTTGATTGACCAAGACGAGGAATTGAGAGACTTAATCTACCAAATA
CCTGGTATGTTTTACCTTTGTCAACATTGTCAGGAAAATACAATAAATTA
AACAAGTTTAACCAACACTGCCAATTCCAGTGTGAATCATGTCAACATCA
ACTCTATCCAAACACCTACACAAACAGTCAAAACTACCAACACCACATTT
GTCGCAAACTCCCCACAACATACACCTGTATCTTCACCTACCAAAAGTAT
TACTGACCTCTCATCATACACCTCAATATCCTCCNN Coding sequence (CDS) from alignment at scaffold_486:175110..176395 >TCONS_00068659 ID=TCONS_00068659|Name=TCONS_00068659|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_486:175110..176395 (Clytia hemisphaerica)
ATGAAACAATTAGAAACTGCCTCAGACTCTTCAATTCAGCCAACTAAAGA
TAACATAAAAACCCTAAAATCATGCCGAAAGGATCCCATCATGGAAACAT
TGAATTTCCTGTCAAAAACAACCAACATAATGAACAAAGACGAAGCAATT
GAAAATTTGTGTGTGGTCATACAGAGCTATTTTCCAGACATATGTCAAAT
ATGCAACCAGTCATATAGAGTAAAAATGCATGACGATTCACTCTTAAAAT
GCGGCTCCTGTGGACAAGAAGTCCATCGACCATGCTTCCTAAAACTGCTA
AAGAACATTAATTTGATTGACCAAGACGAGGAATTGAGAGACTTAATCTA
CCAAATACCTGGTATGTTTTACCTTTGTCAACATTGTCAGGAAAATACAA
TAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068659-exon-scaffold_486-1491911889:175110..176395 | TCONS_00068659-exon-scaffold_486-1491911889:175110..176395 | Clytia hemisphaerica | exon |
| TCONS_00068659-exon-scaffold_486-1510915933:175110..176395 | TCONS_00068659-exon-scaffold_486-1510915933:175110..176395 | Clytia hemisphaerica | exon |
| TCONS_00068659-exon-scaffold_486-1575043694:175110..176395 | TCONS_00068659-exon-scaffold_486-1575043694:175110..176395 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_486 | supercontig | scaffold_486:175110..176395 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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