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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068651 ID=TCONS_00068651|Name=TCONS_00068651|organism=Clytia hemisphaerica|type=transcript|length=1459bp
GTGAAGAATAATATTAAAAATGAACGACGTAAGAAAATCAATGTTTCTGT
CACCAGCAGCAACTACagaatacaaaaataaagaattgagCATTTCCTTG
GGTAATGATTTTCAAGCTATCAATTCCTTTCAAAGGGGATTTGACCACAC
TGGCAAACACTTTTACATTCTCGAAGATATGGATGGTGGAAATCGTCTTC
GTGTATTTATTGTGTATTTCAATGAACATCAAAATGCTCTCGAGAAGAGA
ACTCTAACCATTGATTTCCAAGATATGGATGGTTCGGAATCGGTTTGGCA
GGAACTTGATGCTTATACTGGGAATGTTGTTGTCATTGTGAAGCATGATA
TACTCGATAATGATAATGCAGAGAAATTTATAATAAATGTTTATCATTAT
TATCTCCCTGATGTTTTTGTTGATCATCCGTATAAGGTATTGGATTTAAC
TATCGAGCCAAGTGAAGCAGATATTGTTTTAAGATTCGATAGTAAAGACT
ACGAAAGATGTCAAATTTGGTATGGATTAAGAGAAAATGGCGTAACTGCA
CTTTTGGTGTTAAcctttttcaaagaatataatgAGGAAGGAGAAGCAAC
TCGTCTCCGTGAATGTTGTTTGGATGTTATAAAGACGCAGCAAACTGAAA
TATGTCATTCAAAGAGAGTTGTCATCGATCTCAGTCAATCTTCagttttt
gacgattttttcttttttctcaatgcaacaaaagagagaatttattttta
tttccaaaGAGATAGTGTCTTAAGAATTGTCGAATATGACTACACTGGCA
ATTTTCGTTATGTTTATTCGATTGCAATAGATGATGGATACCATGATTAT
CATTTTGACGACCGTTATATTGTTTTATCACACAAAGGAATTACNGTCTT
AAGAATTGACGAATATGACTACACTGGCAATTTTCGTTATGTTTATTCGA
TTGCAATAGATGATGGATACCATGATTATCATTTTGACGACCGTTATATT
GTTTTATCACACAAAGGAATTACTCACAAGGATAATGCTATACGAGTTTG
GGAATTGAATCAAGATAGGACATGTATTGTTCAAGAGTTTAATGATGAAA
TAATTGATTACGAAACATCAGATGCGAAGTCGTTTTCGTTTCAATATTCG
ATCAAAAGGTTTGTTGATTTCCTTTTGGTTGCCAATGCTTCTGACTTTAA
TAAAGGCAGGCAGCTTGTCTCTTGGATTCAAATTTGCAATGGAGAGAAAT
TAAGAGGGTATGGGATTTTTAGAGGATTGCCTTTAccgaattatttttta
aattggaaTCTGCACGAAGTTGGGATCACttattttgacgaggtgacgaT
GGAGaggcagaaaatgtttttcaaaattgctcatgtaaatatgaatgaat
attcaattcaaaaaatCACTCTGAAACATTTGGCACGAGTGGTAGTACTT
CAATTATTT Run BLAST on NCBI protein sequence of TCONS_00068651-protein >TCONS_00068651-protein ID=TCONS_00068651-protein|Name=TCONS_00068651-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp
MNDVRKSMFLSPAATTEYKNKELSISLGNDFQAINSFQRGFDHTGKHFYI
LEDMDGGNRLRVFIVYFNEHQNALEKRTLTIDFQDMDGSESVWQELDAYT
GNVVVIVKHDILDNDNAEKFIINVYHYYLPDVFVDHPYKVLDLTIEPSEA
DIVLRFDSKDYERCQIWYGLRENGVTALLVLTFFKEYNEEGEATRLRECC
LDVIKTQQTEICHSKRVVIDLSQSSVFDDFFFFLNATKERIYFYFQRDSV
LRIVEYDYTGNFRYVYSIAIDDGYHDYHFDDRYIVLSHKGIXVLRIDEYD
YTGNFRYVYSIAIDDGYHDYHFDDRYIVLSHKGITHKDNAIRVWELNQDR
TCIVQEFNDEIIDYETSDAKSFSFQYSIKRFVDFLLVANASDFNKGRQLV
SWIQICNGEKLRGYGIFRGLPLPNYFLNWNLHEVGITYFDEVTMERQKMF
FKIAHVNMNEYSIQKITLKHLARVVVLQLF Run BLAST on NCBI transcript from alignment at scaffold_486:62552..64010 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068651 ID=TCONS_00068651|Name=TCONS_00068651|organism=Clytia hemisphaerica|type=transcript|length=1459bp|location=Sequence derived from alignment at scaffold_486:62552..64010 (Clytia hemisphaerica)
AAATAATTGAAGTACTACCACTCGTGCCAAATGTTTCAGAGTGatttttt
gaattgaatattcattcatatttacatgagcaattttgaaaaacattttc
tgcctCTCCAtcgtcacctcgtcaaaataaGTGATCCCAACTTCGTGCAG
AttccaatttaaaaaataattcggTAAAGGCAATCCTCTAAAAATCCCAT
ACCCTCTTAATTTCTCTCCATTGCAAATTTGAATCCAAGAGACAAGCTGC
CTGCCTTTATTAAAGTCAGAAGCATTGGCAACCAAAAGGAAATCAACAAA
CCTTTTGATCGAATATTGAAACGAAAACGACTTCGCATCTGATGTTTCGT
AATCAATTATTTCATCATTAAACTCTTGAACAATACATGTCCTATCTTGA
TTCAATTCCCAAACTCGTATAGCATTATCCTTGTGAGTAATTCCTTTGTG
TGATAAAACAATATAACGGTCGTCAAAATGATAATCATGGTATCCATCAT
CTATTGCAATCGAATAAACATAACGAAAATTGCCAGTGTAGTCATATTCG
TCAATTCTTAAGACNGTAATTCCTTTGTGTGATAAAACAATATAACGGTC
GTCAAAATGATAATCATGGTATCCATCATCTATTGCAATCGAATAAACAT
AACGAAAATTGCCAGTGTAGTCATATTCGACAATTCTTAAGACACTATCT
Ctttggaaataaaaataaattctctcttttgttgcattgagaaaaaagaa
aaaatcgtcaaaaactGAAGATTGACTGAGATCGATGACAACTCTCTTTG
AATGACATATTTCAGTTTGCTGCGTCTTTATAACATCCAAACAACATTCA
CGGAGACGAGTTGCTTCTCCTTCCTcattatattctttgaaaaaggTTAA
CACCAAAAGTGCAGTTACGCCATTTTCTCTTAATCCATACCAAATTTGAC
ATCTTTCGTAGTCTTTACTATCGAATCTTAAAACAATATCTGCTTCACTT
GGCTCGATAGTTAAATCCAATACCTTATACGGATGATCAACAAAAACATC
AGGGAGATAATAATGATAAACATTTATTATAAATTTCTCTGCATTATCAT
TATCGAGTATATCATGCTTCACAATGACAACAACATTCCCAGTATAAGCA
TCAAGTTCCTGCCAAACCGATTCCGAACCATCCATATCTTGGAAATCAAT
GGTTAGAGTTCTCTTCTCGAGAGCATTTTGATGTTCATTGAAATACACAA
TAAATACACGAAGACGATTTCCACCATCCATATCTTCGAGAATGTAAAAG
TGTTTGCCAGTGTGGTCAAATCCCCTTTGAAAGGAATTGATAGCTTGAAA
ATCATTACCCAAGGAAATGctcaattctttatttttgtattctGTAGTTG
CTGCTGGTGACAGAAACATTGATTTTCTTACGTCGTTCATTTTTAATATT
ATTCTTCAC Coding sequence (CDS) from alignment at scaffold_486:62552..64010 >TCONS_00068651 ID=TCONS_00068651|Name=TCONS_00068651|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_486:62552..64010 (Clytia hemisphaerica)
AAATAATTGAAGTACTACCACTCGTGCCAAATGTTTCAGAGTGatttttt
gaattgaatattcattcatatttacatgagcaattttgaaaaacattttc
tgcctCTCCAtcgtcacctcgtcaaaataaGTGATCCCAACTTCGTGCAG
AttccaatttaaaaaataattcggTAAAGGCAATCCTCTAAAAATCCCAT
ACCCTCTTAATTTCTCTCCATTGCAAATTTGAATCCAAGAGACAAGCTGC
CTGCCTTTATTAAAGTCAGAAGCATTGGCAACCAAAAGGAAATCAACAAA
CCTTTTGATCGAATATTGAAACGAAAACGACTTCGCATCTGATGTTTCGT
AATCAATTATTTCATCATTAAACTCTTGAACAATACATGTCCTATCTTGA
TTCAATTCCCAAACTCGTATAGCATTATCCTTGTGAGTAATTCCTTTGTG
TGATAAAACAATATAACGGTCGTCAAAATGATAATCATGGTATCCATCAT
CTATTGCAATCGAATAAACATAACGAAAATTGCCAGTGTAGTCATATTCG
TCAATTCTTAAGACNGTAATTCCTTTGTGTGATAAAACAATATAACGGTC
GTCAAAATGATAATCATGGTATCCATCATCTATTGCAATCGAATAAACAT
AACGAAAATTGCCAGTGTAGTCATATTCGACAATTCTTAAGACACTATCT
Ctttggaaataaaaataaattctctcttttgttgcattgagaaaaaagaa
aaaatcgtcaaaaactGAAGATTGACTGAGATCGATGACAACTCTCTTTG
AATGACATATTTCAGTTTGCTGCGTCTTTATAACATCCAAACAACATTCA
CGGAGACGAGTTGCTTCTCCTTCCTcattatattctttgaaaaaggTTAA
CACCAAAAGTGCAGTTACGCCATTTTCTCTTAATCCATACCAAATTTGAC
ATCTTTCGTAGTCTTTACTATCGAATCTTAAAACAATATCTGCTTCACTT
GGCTCGATAGTTAAATCCAATACCTTATACGGATGATCAACAAAAACATC
AGGGAGATAATAATGATAAACATTTATTATAAATTTCTCTGCATTATCAT
TATCGAGTATATCATGCTTCACAATGACAACAACATTCCCAGTATAAGCA
TCAAGTTCCTGCCAAACCGATTCCGAACCATCCATATCTTGGAAATCAAT
GGTTAGAGTTCTCTTCTCGAGAGCATTTTGATGTTCATTGAAATACACAA
TAAATACACGAAGACGATTTCCACCATCCATATCTTCGAGAATGTAAAAG
TGTTTGCCAGTGTGGTCAAATCCCCTTTGAAAGGAATTGATAGCTTGAAA
ATCATTACCCAAGGAAATGctcaattctttatttttgtattctGTAGTTG
CTGCTGGTGACAGAAACATTGATTTTCTTACGTCGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068651-exon-scaffold_486-1491911889:62552..64010 | TCONS_00068651-exon-scaffold_486-1491911889:62552..64010 | Clytia hemisphaerica | exon |
| TCONS_00068651-exon-scaffold_486-1510915933:62552..64010 | TCONS_00068651-exon-scaffold_486-1510915933:62552..64010 | Clytia hemisphaerica | exon |
| TCONS_00068651-exon-scaffold_486-1575043694:62552..64010 | TCONS_00068651-exon-scaffold_486-1575043694:62552..64010 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_486 | supercontig | scaffold_486:62552..64010 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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