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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068622 ID=TCONS_00068622|Name=TCONS_00068622|organism=Clytia hemisphaerica|type=transcript|length=3477bpRun BLAST on NCBI protein sequence of TCONS_00068622-protein >TCONS_00068622-protein ID=TCONS_00068622-protein|Name=TCONS_00068622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=651bp MLLWKSIFLLCFIHLCFNGLTIASTDSEGEEKAEDLSENDSTVILIVILLRun BLAST on NCBI transcript from alignment at scaffold_486:135878..164350- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068622 ID=TCONS_00068622|Name=TCONS_00068622|organism=Clytia hemisphaerica|type=transcript|length=28473bp|location=Sequence derived from alignment at scaffold_486:135878..164350- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_486:135878..164350- >TCONS_00068622 ID=TCONS_00068622|Name=TCONS_00068622|organism=Clytia hemisphaerica|type=CDS|length=31296bp|location=Sequence derived from alignment at scaffold_486:135878..164350- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068622 vs. Swiss-Prot (Human)
Match: SL9A9 (Sodium/hydrogen exchanger 9 OS=Homo sapiens GN=SLC9A9 PE=1 SV=1) HSP 1 Score: 491.5 bits (1264), Expect = 8.514e-159 Identity = 266/525 (50.67%), Postives = 357/525 (68.00%), Query Frame = 1
Query: 301 WLFKVKRFRFFHETGLCLIYGMIAGAILKY-TGGTN-QKPSLHTNISIPTLAKSIIVSVDSDPYNYSYLLNGKTYTVKS-KGGELEEKAVFDPEVFFYALLPPIIFFAGYDMKKRFFFRNLGAILTFAFIGTTISCVVFGAMIWIYFK-MVHS---STDAFNFADSLLFGSLISATDPVTVLAIFHDLNVEVDLYAIVFGESVMNDAVAIVLYKTIQ----SNYXXXXXXXXXXXXVGNFIWIFGGSFLLGSAMGLGTALLTKLTHISQFPRLETALFVLMSYSTFLIAESAKLTGIVTVLFCGISQAHYTYNNLSKQSQVATKEIFGVLNFLAENFIFSYMGMTVFTFSQHNWDPGFIAWCFLAIAVSRFLNIYPLSFLMNLKRSKKIPLNFQHMLFFAGLRGAVAFALAIRNTESGQRKLMLTSVLVIAIVTVIFNGGLTTQALLKLGIRVNVDQDEDIE---TEQHEDGAGQIHEDISYERSWLVRKWHNFDVKYMKPMFTSKAGPVRGDVPRCCVPLASCL 1833
WLFK RFRF HETG ++YG+I G IL+Y T T+ + +++ + + +++V++ Y Y Y + + +G + EK FDPE+FF LLPPIIF AGY +KKR FF+NLG+ILT+AF+GT ISC+V G +++ + K M+H+ F+F D L FGSL+SATDPVTVLAIFH+L+V+ DLY ++FGESV+NDAVAIVL +I +AF AA+FF +VGNF+ IF GSF +GSA + TALLTK T + +FP LET LF L+S+S FL AE+A LTGIV VLFCG++QAHYTYNNLS S++ TK++F +NFLAEN IF YMG+ +FTF H ++ FI FLAI V+R NIYPLSFL+NL R +KIP NFQHM+ F+GLRGA+AFALAIRNTES +++M T+ L++ TV GG TT L L IRV VD DE+++ + QH++ E + L R W++FD KY+KP+ T P+ +P C P++ L
Sbjct: 39 WLFKNHRFRFLHETGGAMVYGLIMGLILRYATAPTDIESGTVYDCVKLTFSPSTLLVNITDQVYEYKYKREISQHNINPHQGNAILEKMTFDPEIFFNVLLPPIIFHAGYSLKKRHFFQNLGSILTYAFLGTAISCIVIGLIMYGFVKAMIHAGQLKNGDFHFTDCLFFGSLMSATDPVTVLAIFHELHVDPDLYTLLFGESVLNDAVAIVLTYSISIYSPKENPNAFDAAAFFQSVGNFLGIFAGSFAMGSAYAIITALLTKFTKLCEFPMLETGLFFLLSWSAFLSAEAAGLTGIVAVLFCGVTQAHYTYNNLSSDSKIRTKQLFEFMNFLAENVIFCYMGLALFTFQNHIFNALFILGAFLAIFVARACNIYPLSFLLNLGRKQKIPWNFQHMMMFSGLRGAIAFALAIRNTESQPKQMMFTTTLLLVFFTVWVFGGGTTPMLTWLQIRVGVDLDENLKEDPSSQHQEANNLDKNMTKAESARLFRMWYSFDHKYLKPILTHSGPPLTTTLPEWCGPISRLL 563 The following BLAST results are available for this feature:
BLAST of TCONS_00068622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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