|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068621 ID=TCONS_00068621|Name=TCONS_00068621|organism=Clytia hemisphaerica|type=transcript|length=2882bpRun BLAST on NCBI protein sequence of TCONS_00068621-protein >TCONS_00068621-protein ID=TCONS_00068621-protein|Name=TCONS_00068621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=701bp MSLHLVSFILAILSASKAGQIENKIYDNLKYFQQCILLTNATHQVGCTSDRun BLAST on NCBI transcript from alignment at scaffold_486:96541..113652- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068621 ID=TCONS_00068621|Name=TCONS_00068621|organism=Clytia hemisphaerica|type=transcript|length=17112bp|location=Sequence derived from alignment at scaffold_486:96541..113652- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_486:96541..113652- >TCONS_00068621 ID=TCONS_00068621|Name=TCONS_00068621|organism=Clytia hemisphaerica|type=CDS|length=40014bp|location=Sequence derived from alignment at scaffold_486:96541..113652- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068621 vs. Swiss-Prot (Human)
Match: NICA (Nicastrin OS=Homo sapiens GN=NCSTN PE=1 SV=2) HSP 1 Score: 400.979 bits (1029), Expect = 1.255e-125 Identity = 248/716 (34.64%), Postives = 377/716 (52.65%), Query Frame = 1
Query: 88 LHLVSFILAILSASKAGQIENKIYDNLKYFQQCILLTNATHQVGCTSDMNGNRGTLHFIDSDEDLQWLIKKGSHTPYIPLLNASMFTRPVMDKLM-ESKKISGVLMIHEPKTQNPTEFSPEDTCPLDNFGIYSGH--KEYGDCQKVKWNPVGNGMSFVYYGIPIFSLTSRHEIDALIKCFRKHNDPKSNKTIDYPLCAVEMKDFMFAAKDTPTCMRKTEAPNLIGSTY-------CDPLEDKNVHGFLEPLSPE---VDDGEVIMATTKMDSTAFFHDIALGADNGVTGIVTLLGAAFALGNYKRELSEKNMAEKLHPVLFSFFNGEAFDYIGSSKMVFDMQRNNFPYKTDYKDPILNITNDDAYISKFNLSKVGYFLEVGQVGQGN--DIFLHTDPISQQIPDIKSKTQDLLKLIKTQSQNV-SLNMETVESGRPLPPASFQRFLRAQNISGVVFTDHKNEFTNKYYNSRFDNTRNLDIYLNTNTETNETVKLHGPLIDRLNKLSIALANTLYRLASDGREPSRNITLDKSRTGNLLYCFLYSANCPAFKEILNDKETKPFSNTPISRYISVGQIKNTITTVLTRLISYYTG---DWTKGKCQSKR---SELPYMYSYSTVKGEF----VDDTYTCVKSVSFTTPAVSPSFELKDYASTEYSTWTESMWSGDVGVRLYMVANPTNEXXXXXXXXXXXXXXXAFVYFIKKNAHILF 2157
L L+SF + + + +E KIY L C+ L NATHQ+GC S ++G+ G +H ++ +EDLQW++ G + PY+ LL + FTR +M+KL + +I+G L + K + FSP CP D FG+YS E+ C++++WN +GNG+++ + PIF L +E + +C++ HN ++ +PLCA+++ M A T TCMR++ I ST+ CDPL D NV L+P++ D V++A T++DS +FF ++A GA++ V VT L AA AL ++ V+F FF GE FDYIGSS+MV+DM++ FP + L V F+E+GQV ++++HTDP+SQ+ ++++ +DLL ++ V ++ + +PLPP+S QRFLRA+NISGVV DH F NKYY S +D N+++ E + L ++ L LY LA G S + D LLY FL AN F+ IL + P+ YI+V NT T V+ ++ TG + T+ +CQ SE +Y YS V+G D CV+S + A+SP+FEL ++STEYSTWTES W D+ R++++A+ E+I L VG +L+ S+ Y I A +LF
Sbjct: 18 LRLLSFCVLLAGLCRGNSVERKIYIPLNKTAPCVRLLNATHQIGCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG-LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPIFLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSS----IQSTFSINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVASFVTQLAAAEALQK------APDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQ---------------------LENVDSFVELGQVALRTSLELWMHTDPVSQKNESVRNQVEDLLATLEKSGAGVPAVILRRPNQSQPLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFVTDTAKALADVATVLGRALYELAG-GTNFSDTVQADPQTVTRLLYGFLIKANNSWFQSILRQDLRSYLGDGPLQHYIAVSSPTNT-TYVVQYALANLTGTVVNLTREQCQDPSKVPSENKDLYEYSWVQGPLHSNETDRLPRCVRSTARLARALSPAFELSQWSSTEYSTWTESRWK-DIRARIFLIASKELELITLTVGFGILIFSLIVTYCINAKADVLF 698 The following BLAST results are available for this feature:
BLAST of TCONS_00068621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.