|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068606 ID=TCONS_00068606|Name=TCONS_00068606|organism=Clytia hemisphaerica|type=transcript|length=458bp
ACGGTCGTCAAAATGATAATCATGGTATCCATCATCTATTGCAATCGAAT
AAACATAACGAAAATTGCCAGTGTAGTCATATTCGTCAATTCTTAAGACA
CCTTctcttttgaaataaaaatagattctctcttttgttgcattgagaaa
aaagaaaaaatggtcaaaaactgAAGATTGACTGAGATCGATGACAACTC
TCTTTGAATGACAGATTTCAGTTTGCTGCGTCTTTATAACATCCAAACAA
CATTCACGGAGACGAGTTGCTTCTCCTTCCTCgttatattctttgaaaaa
ggTTAACACCAAAAGTGCAGTTACGCCATTTTCTCTTAATCCATACCAAA
TTTGACATCTTTCGTAGTCTTTACCATCGAATCTTAAAACAATATCTGCT
TCACTTGGCTCGATAGTTAAATCCAATACCTTATACGGATGATCAACAAA
AACATCAG Run BLAST on NCBI transcript from alignment at scaffold_486:47527..56149+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068606 ID=TCONS_00068606|Name=TCONS_00068606|organism=Clytia hemisphaerica|type=transcript|length=8623bp|location=Sequence derived from alignment at scaffold_486:47527..56149+ (Clytia hemisphaerica)
ACGGTCGTCAAAATGATAATCATGGTATCCATCATCTATTGCAATCGAAT
AAACATAACGAAAATTGCCAGTGTAGTCATATTCGTCAATTCTTAAGACA
CCTTctcttttgaaataaaaatagattctctcttttgttgcattgagaaa
aaagaaaaaatggtcaaaaactgAAGATTGACTGAGATCGATGACAACTC
TCTTTGAATGACAGATTTCAGTTTGCTGCGTCTTTATAACATCCAAACAA
CATTCACGGAGACGAGTTGCTTCTCTTTCCTcattatattctttgaaaaa
ggTTAACACCAAAAGTGCAGTTACGTCATTTCCTCTTAATCCATACCAAT
TTTGACATCTTTCGTAGTCTTTACCATCGAATCTTAAAACAATATCTGCT
TCACTTGGCTCGATAGTTAAATCCAATACCTTATACGGATGATCAACAAA
AACATCAGGGAGATAATAATGATAAATATCTACTGAAAATTTCTCTACAT
TATCATTATCGAGTATATCATGCTTCACAATGACAACAACATTCCCAGTA
TACGCATCAAGTTCCTGCCAGGCCGATTCCGAACCATCCATATCTTGGAA
ATCAATGGTTAGAGTTCTCTTCTCGAGAGCATTTTGTTGTTCATTGAAAT
ACACCATAAATACACGAAGACGATCTCCACCATCCATATCTTCGAGAATG
TAAAAGTGTTTGCCAGTGTGGTCAAATACCCTTTGAAAGGAATTGATAGC
TTGAAAAGCATTACCCAAGGAAATGctcaattctttatttttgtattctG
TAGCTGCTGCTGGTGGCAGAAACATTGATTTTCTTACGTTGTTCATTGTT
AATATTATTCTTCACCCACAATCTAAACTATGGTAGAAGAAACTTTATGT
AATTGCAAACAATGAAAGACAGAGTAATAGTAAATTGAAATTAATTAGGT
AAAATTGTATAACTAAACGTGGTCCAGATTTCAAAAGTGACTAATCTCCC
TGTTTAGTTTGTTTAGACATtttgaaaacctttaaaaataagtttaaaTT
ATAGAATAAAATCTCCATCATGAatttgagggtgttcccatTATCTTGGA
GGTGGCGATTTTCGTTCGATGATTCCTAACATGTTCCTGGACCTCTctac
aaaattatatttttacacCATTTTTTTCGAGGTTCTGATGGGTTTTGATA
TCCTAATTCTACCTGATTAATTACCAGAAGTTTCATTTTGTTTATCAAAG
TATGTTGAAGATATAATAATTAACGTTCTCAGATGTCGTAAAGAAAATAC
TATATAAGGAAGAGTTTTctaagagaaaaaatgacaaaacaaaaattata
aaatgtatGAACGTTCAACGTTCCTTAAAATTATAGATAAATTTCGAGAA
AAGATTGagaaaaataaaagcaaaatgtaCAAGAAAAAGCAAGTTTATAC
catattctaaaaaaaataccttaaaagtTTGATGTTAAAATATCTATATT
TTGTGTACAGGAGGGGATGTACCAGATTTCGGAATTGAAAAATTCAGCCG
CTgttatttcaataatttttcgtCCTAAATCTTTTCAGTAGTTTGGAATC
CTGATATCATTTGGTTTATCGAAAAAAAGACCTCTTTTCACACTGAAATC
TCTGTAATAAGATAGCTTCACTCTAAAATTTCggaattttggcaaaatgg
ctcaaaaactaaagaaaaatcgATCAtgaaaccaaaatatttttaccctg
AACAAGATTAAAGGATTGAAGTTCTGACCATTAGTCCAGTTATAATCTAT
ATTTTCTGTAAGTAAATCATGTTTAAANTCCTGAACAAGATTAAAGGATT
GAAGTTAGTCCAGTTATAATCTATATTTTCTGTAAGTAAATCATGTTTAA
AGATAAAAAGCTATAAGAAATATAAGAATTGATTATGAACAACTTTTATA
AacccaaaaacttcaaaaggtttaATATCTAAACTAAAAACAGAAATAGA
AATAAacttatctttccaacaagatATAAAATTCATATTGCAAACAAACT
ATACATAATCTGGGTATATATAAAatgatttataaaaacaataagaTTCA
TTAAAAATCATCTACGAAAGTTCAGTTAATTTTCAGTTGTTGAAGATACT
GAACTTTCATAGAtgatttttaatgaattttattgtttttataaattatt
ATATACATACCCAGATTATGTATAGTTTGCAATAtgaattttaaaactaa
aataaaatttacctAAATAATCACTATAGAACTAAATTTAGATTGAAAAN
CAATTCAATAcaattcaattttatttgacgtcaaatacagTCGCATCGCG
AGAGCAGCAAAAAATGTGCACAATATGGCCGAAATAACTGGAAAAATATA
CGAACGAAAATCCGAGGAAATTGGTTCTTGTACCCCATCAAGCTGTCTCA
TCCATGCAAACACAAATAAAAAGGACACTTTACAATGCAAGAAATGCGAA
CGTCGAGTTCATTTGGCTTGCTCTGAGCTTCCTCCTTATCAAATCCAGCT
TTATCTTCAACAGTCTTCAACACAAATATAGAAGCTATCAATGCATGAGC
TGTGTGATCATAACACcagaattgaaaaagaaattgaacttcAAGTCTGt
tggagatttaaaaaaagatatcgATGCATGTGAGAACATAATAAAAGCAC
AACGGGAggacatttcaaatttgaaggCTAAAGTGTCAACTAACAATGTG
AATAAAGCAGTCACAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCCAATATTTGGGAAAACAATCTTATGAGCTTTGAAC
AACATCTCATCTTGGCCACCCTCCTCGTGATTGCTTACATAGAACCCAGT
ATAAACCAATTCCTTTAAATTCCAATTTAATGAAAACGTCTGCATTTCAT
CATTTGGATTTAAATTAATGTCACTTGAAATCTCTTTGCTATTCAAGTCA
AACAGAAAAAATTTCGTCGATGAATTGTCTGGCTCGTAAAGTAAGGGAAT
CAAAAGACGTCCAAATTTCAATGTTGGAGGACCAGGAAAATTGACTTTAG
TAATTTTAAGGTTTACAGGAAGTTTGAATTCTTGACTCGATCCAATATGA
CCCTCTAGAAGTCTTTGCATGCAAAAGATTCCTGATATACCGTAGAAAAT
GACAATCATTGAATCACCTTCTCCAGATTGCAATAAAGAATGATGATTAT
ACAAACTAGAATCCCATGGCAGTatgtatgaaaataaaatcttccCATTA
AGATCAACTTCGAAGATTTCGTACgttttaatagattttttagaaaaata
cagCCTTTGTTTGGAATACAAGATCTTCATTGGATGGTACATATCGGAAG
AAAAAATCTCCAAATTGCATTCCACCCTTTTCAAATGAATCATTTGCATC
TTACTAACGTGTAAAACATCGATGCAAATTTCAGGTCGATATCGATAATA
CCATCTATCTTCTCTATATCTACGATACCCTTGGACAAGCagagttgatg
attttttatcAACACCACAACGTTCAAAATAAATCATATTCAGAGATCCC
Actggcatttttgaaaaaacatgcatgaaaaaatgccaaaaagagcagaa
aaaaatgctaaataatgctaattttaaatggaaaaacatgaaaaacatgc
cAAAAAGTAGAGTTATTAATCAACGAAGTTCCCGTGTTTCCCGTACCTAA
AAACAGTGATGTAGACATGATGAGAAATCGATATATAATCTAATAAATAT
CACAAACACAAGTAGAAATCATTTCACTTGGAATTTATTAATCAATCGAA
GGCTGCAATTTAAAATgtagcccaccatggttggacAATAGGAAAGTTTA
TGATTTTCAAGATgcaaaaaaagtgtcttttcaagggTGGAAAACTAAAT
AGAAAATAACGGATTGAAATGTAGGAACAGTATAACTAAGAATCAGAAAA
ATGTGCATAAGGCAAATTTTAGCTTAGGTAGCCCTGTTCCTGAAAAAAAA
CCAAGTTTGGTCCCAAaggagaaatatttaaaaatcatgTATATCCAGAC
ACTAGAATACAAGCTATAATGCAAgagacatttaaaaaattggtgCTTTA
AAAAAACCCTGTGTTTTGCCGAGGTCATGGACCTGTCTAAGCCCTGGAAG
AATAATGAGGTGGTTCACTGACATGTAGTCTTGACAAAACTTCCAAATAT
TGGCTACTTGTTTTATAAAGTAGAGCTTGAACGGAGAAaaacatagtgtg
cagagggatCTAAACCCCctatttttatttcatcccccgtATATGTGTAT
cccctatttaaaaaaaatttcgaacccgTGTTATTGACAGTAGCAGTCCA
ACAGTCATTCCAaaccgaaaaaattgaaatttgtatcaaaaattatatga
aaaaaagaGTTTAACATGGTGCCGCAGGCAAAGACTTAGCTATCTACACT
TGTTTTTTAGTTGCCCCAtaccaaatatctaaatcaatataaatatgata
gatattttgaccaaaagttGTTACCCCCCCTAATTTTTCCTTGACCcccc
cctaaaatcttaaaccCCCCATTTTTTTCGGGAAATCTCCTACCTCCCTA
TAAAGCATCAGAAAAGATGGATCCCCCTACCTGACACATCCTTGTTTTAA
CATTTCTGTCAATGGTATTTATTGAAAACTTaagataatattttatgttg
cccaccatggttgggcaagtgagaaaattttagaattttgggGGGCTGAA
AGTGCTATTTTGAGCTATCTTTAACGAATCTGAATATCAGGACAGAGAAT
AgacaatataaacaaaattcCCTAATGTTTCTCTGAAAAACATGCCAAAA
TGGTCCAAAACATGctaaaaaccatgaaaaatgccaaatttgcaaaaatc
atgaaaatcatgaaaaacatgcCGAGTGGGGTCTCTGCATATTGTTTTTA
AATCGGTCCTTGTCATAATTCAAAGTAATATCAGGTGTTTTGTCAATCAC
AATTACGACATCATTCGATCTTTTCAAAAGGTCAAAGATATCGAGATAAT
AAAGGTCCACAGCAATATTTTCATCTTCTGATGCTTTATAGTGAACAGTA
TGGACAACTTTTCCATGGTATGGAAACATGAAAGACCGTCTGCCGCATTC
GCATTCGATAGGTATTGAGATCCTCAATATCTTCTTTCCAATCGATTCAG
TTACTGCATCAAAATCGATAACAAAAATAGCCATATCAAATTCTCCATAC
TCATCCATTGCAATAATGTAATATTTACCAGTACCATCAAAACCTTGGTC
GTAAATATCTCTGTAGAAATCTACGCCCAGTGAGATTGATGATTCATCTT
TGCCAAGAATATTTGGAGGTACAAACATTGATTTTGCAATATtggtcatt
ttttttatttttcaatttcttatgTAATCTGAAAAATGAGAAGTAAAGTT
TGAAATCCAATTATCTATAAGCTTTAAGAAGCACTTACTACTCTACGAGT
CTCGCATAATTTCAGGTAATTTGGCGAAAATAAATGATTTGCTCGACAAT
CAATGAAATTAacgtactcttgtctcccgaatagacgaggggggggggtc
cgaaaatAAATAGGGgttaggaaaattttctaaattctaataagcggggg
gggggaatttgaaagtagaattttttttaactgatatcaatttgaacaat
aaaaaagaaacttatATTATTAAatacgtaaaataagaaccaatactaac
aaaaaggaaatttttaacaagtttaaggtctatttacgccaaattaaatc
cctgcaAAGTTTAACGAAATTTTTCAAGATAGAAATTCTATGGAGAATAA
TGCAtttttagtaaaataacatGTATTTCTTAGTTTACCAGAGACTAAAA
CCTtcccattcgccaaattaagtcCCCGCTAAAATTTACAAAGTTGATTA
TTCGCCAagttaaatccccgccaaaaatttAATTATTCCCAATCGCCAAA
TTATATCCACgtcaaaattaatccacttaaggtattttcGAAAGTTTCTT
TATTTAAAGTGATCAAAATACCAAATGGTCTATCTTAGAAAACaagataa
aaatggaaaaatggaaaaaaagtggCAGTCCACGATAAACATATTATTTA
TCAGATATGATCAATGGTAATTTTTAACAAAGACCACTCTGGTGAGGCAC
TTACATAAAAACTTGTATAAAAACATTTNAGATATGATCAATGGTAATTT
TTAACAAAGACCACTCTGGTGAGGCACTTACATAAAAACTTGtataaaat
cattttcaaaaggtCTAGCATCAAAAGATAGattcaaaagaaacaaaaca
aaaataaaaaaacaggtGAAATAATAAAAGCGATCAAATTCTCACTTTTC
AATTCCTAAATATCCAAAAAGAGTTGATGGTAGATTGAGCTTTAGTAATT
CGTTACTGCTAAATAATTGAAGTATTACCACTCGTGCCAAATGTTTCAGA
GTGattttttgaattgaatattCATTCATATTTACATGACcgattttgaa
aacattttctgccTCTCCATCGTCATCTCGTCAAAATAAGTGATCCCAAC
TTCGTGCAGAttccaatttaaaaaataattcggTAAAGGCAATCCTCTAA
AAATCCCATACCCTCTTAATTTCTCTCCATTGCAAATTTGAATCCAAGAG
ACAAGTTGTCTGCCTTTATTAAAGTCAGAAGCATTGGCNCAATCCTCTAA
AAACCCCATACCCTCTTAATTTCTCTCCATTGCAAATTTGAATCCAAGAG
ACAAGTTGTCTGCCTTTATTAAAGTCAGAAGCATTGGCAACCAAAAGGAA
ATCAACAAACCTTTTGATCCAGGGCCCGCGccacgattttgaaagtgagg
gggccaacaaaatatagtgactaaggaggcgcaaccatggtttgcgccga
cgggccggaaaattgtttgtttaaaacaaaatagtatAATTAGACTTATT
TAAGTGTCCATCTGTCCCGTCTTAGAAAGGTTCTAACGTTTTTATTTGGC
ACGtgcacagaaaagaaaaaaataattaggtgaagagaaactttttattt
tgctttgcaaaaaagtggaggggccatggccccccggcccccccggTGGC
GCGGGCCCTGTTGATCGAATATTGAAACGAAAACAAATTCGCATCTGATG
TTTCGTAATCAATTATTTCATCATTAAACTCTTGAACAATACATGTCCTA
TCTTGATTCAATTCCCAAACTCGTATAGCATTATTCTTGTGAGTAATTCC
TTTGTGTGATAAAACTATATAACGGTCGTCAAAATGATAATCATGGTATC
CATCATCTATTGCAATCGAATAAACATATCGAAAATTGCCAGTGTAATCA
TATTCGTCAATTCTTCTGTctcttttgaaataaaaatagattctctcttt
tgttgcattgagaaaaaagaaaaaatcatcaaaaactgAAGATTGACTGA
GATCGATAGCAACTCTCTTTGAATGACAGATTTCAGTTTGCTGTGTCTTT
ATGACATCCAAACAACATTCACGGAGACGAGTTGCTTCTCCTTCCTCgtt
atattctttgaaaaaggTTAACACCAAAAGTGCAGTTACGCCATTTTCTC
TTAATCCATACCAAATTTGACATCTTTCGTAGTCTTTACCATCGAATCTT
AAAACAATATCTGCTTCACTTGGCTCGATAGTTAAATCCAATACCTTATA
CGGATGATCAACAAAAACATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068606-exon-scaffold_486-1491911889:47527..47766 | TCONS_00068606-exon-scaffold_486-1491911889:47527..47766 | Clytia hemisphaerica | exon |
| TCONS_00068606-exon-scaffold_486-1510915933:47527..47766 | TCONS_00068606-exon-scaffold_486-1510915933:47527..47766 | Clytia hemisphaerica | exon |
| TCONS_00068606-exon-scaffold_486-1575043694:47527..47766 | TCONS_00068606-exon-scaffold_486-1575043694:47527..47766 | Clytia hemisphaerica | exon |
| TCONS_00068606-exon-scaffold_486-1491911889:55932..56149 | TCONS_00068606-exon-scaffold_486-1491911889:55932..56149 | Clytia hemisphaerica | exon |
| TCONS_00068606-exon-scaffold_486-1510915933:55932..56149 | TCONS_00068606-exon-scaffold_486-1510915933:55932..56149 | Clytia hemisphaerica | exon |
| TCONS_00068606-exon-scaffold_486-1575043694:55932..56149 | TCONS_00068606-exon-scaffold_486-1575043694:55932..56149 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_486 | supercontig | scaffold_486:47527..56149 + |
Blast
The following BLAST results are available for this feature:
|
